format-version: 1.2 ontology: uberon/subsets/circulatory-minimal.obo owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\n\n############################\n# Object Properties\n############################\n\n# Object Property: ()\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectComplementOf()))\n\n# Object Property: ()\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: ()\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: ()\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: ()\n\nIrreflexiveObjectProperty()\n\n# Object Property: ()\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n\n\n############################\n# Classes\n############################\n\n# Class: ()\n\nEquivalentClasses( ObjectSomeValuesFrom( ))\n\n# Class: ()\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: ()\n\nSubClassOf(Annotation( \"FMA-modified\"^^xsd:string) ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf(Annotation( \"FMA-modified\"^^xsd:string) ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: ()\n\nSubClassOf(Annotation( \"overlaps via basement membrane. consider also adjacency\"^^xsd:string) Annotation( ) ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: ()\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: owl:Nothing (owl:Nothing)\n\nSubClassOf(owl:Nothing owl:Nothing)\n\n\n) [Term] id: BFO:0000004 is_a: BFO:0000002 [Term] id: BFO:0000040 name: material entity is_a: BFO:0000004 [Term] id: CL:0000071 name: blood vessel endothelial cell namespace: cell def: "An endothelial cell that lines the vasculature." [] synonym: "cuboidal endothelial cell of vascular tree" EXACT [] relationship: part_of UBERON:0004638 ! blood vessel endothelium [Term] id: CL:0000193 name: cardiac muscle cell (sensu Arthopoda) namespace: cell alt_id: CL:0000466 def: "A striated muscle cell of an arthropod heart that participates in heart contraction." [] is_a: CL:0000746 ! cardiac muscle cell [Term] id: CL:0000348 name: choroidal cell of the eye namespace: cell def: "A cell of the choroid of the eye." [] is_a: BFO:0000004 relationship: part_of UBERON:0001776 ! optic choroid [Term] id: CL:0000359 name: vascular associated smooth muscle cell namespace: cell def: "A smooth muscle cell assocatiated with the vasculature." [] synonym: "vascular smooth muscle cell" EXACT [] synonym: "VSMC" EXACT [] relationship: part_of UBERON:0002049 ! vasculature [Term] id: CL:0000513 name: cardiac muscle myoblast namespace: cell alt_id: CL:0000714 def: "A precursor cell destined to differentiate into cardiac muscle cell." [] synonym: "cardiac muscle progenitor cell" EXACT [] synonym: "cardiomyocyte progenitor cell" EXACT [] xref: FMA:84797 is_a: CL:0002494 ! cardiocyte relationship: part_of UBERON:0001133 ! cardiac muscle tissue [Term] id: CL:0000704 name: endothelial tip cell namespace: cell def: "A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels." [] is_a: CL:0000071 ! blood vessel endothelial cell [Term] id: CL:0000706 name: choroid plexus epithelial cell namespace: cell alt_id: CL:1000430 def: "Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord." [] synonym: "epithelial cell of choroid plexus" EXACT [] xref: FMA:70549 relationship: part_of UBERON:0001886 ! choroid plexus [Term] id: CL:0000708 name: leptomeningeal cell namespace: cell def: "Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [] synonym: "leptomemingeal cell" RELATED [] relationship: part_of UBERON:0003210 ! blood-cerebrospinal fluid barrier [Term] id: CL:0000746 name: cardiac muscle cell namespace: cell alt_id: FMA:83808 def: "Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [] comment: This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction. synonym: "cardiac muscle fiber" EXACT [] synonym: "cardiac myocyte" EXACT [] synonym: "cardiocyte" BROAD [] synonym: "cardiomyocyte" EXACT [] synonym: "heart muscle cell" EXACT [] xref: BTO:0001539 xref: CALOHA:TS-0115 xref: FMA:14067 is_a: CL:0002494 ! cardiocyte relationship: develops_from CL:0000513 ! cardiac muscle myoblast [Term] id: CL:0000881 name: perivascular macrophage namespace: cell def: "A central nervous system macrophage found in small blood vessels in the brain. Markers include CD14+CD16+CD163+." [] comment: Markers: Human/monkey, mice: CD163. Human: CD14+CD16+CD163+. relationship: part_of UBERON:0001981 ! blood vessel [Term] id: CL:0002068 name: Purkinje myocyte namespace: cell def: "Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter." [] synonym: "myocytus conducens cardiacus" EXACT [] synonym: "Purkinje cell fiber" EXACT [] synonym: "Purkinje muscle cell" EXACT [] xref: BTO:0001032 xref: FMA:14146 is_a: CL:0002086 ! specialized cardiac myocyte created_by: tmeehan creation_date: 2010-06-28T08:36:15Z [Term] id: CL:0002072 name: nodal myocyte namespace: cell def: "A specialized cardiac myocyte in the sinoatrial and atrioventricular nodes. The cell is slender and fusiform confined to the nodal center, circumferentially arranged around the nodal artery." [] synonym: "cardiac pacemaker cell" EXACT [] synonym: "myocytus nodalis" EXACT [] synonym: "P cell" EXACT [] synonym: "pacemaker cell" BROAD [] xref: BTO:0004190 xref: FMA:67101 is_a: CL:0002086 ! specialized cardiac myocyte created_by: tmeehan creation_date: 2010-06-29T11:41:37Z [Term] id: CL:0002073 name: transitional myocyte namespace: cell def: "Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes." [] xref: FMA:67142 is_a: CL:0002086 ! specialized cardiac myocyte created_by: tmeehan creation_date: 2010-06-29T02:39:32Z [Term] id: CL:0002074 name: myocardial endocrine cell namespace: cell def: "The myoendocrine cellis a specialized myocyte localized mainly in the right and left atrial appendages, and also scattered within other areas of the atria and along the conductive system in the ventricular septum. The most conspicuous feature distinguishing myoendocrine cells from other atrial myoctyes is the presence of membane-bounded secretory granules (these granules contain precursor of cardiodilatins or atrial natriuretic polypeptides)." [] xref: FMA:67111 is_a: CL:0002086 ! specialized cardiac myocyte created_by: tmeehan creation_date: 2010-06-29T11:50:47Z [Term] id: CL:0002086 name: specialized cardiac myocyte namespace: cell def: "A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart." [] xref: FMA:67968 is_a: CL:0000746 ! cardiac muscle cell created_by: tmeehan creation_date: 2010-07-21T01:33:38Z [Term] id: CL:0002096 name: internodal tract myocyte namespace: cell def: "A specialised myocyte that lies between the sinoatrial node and the atrioventricular node and is involved in the conduction of electrical signals." [] xref: FMA:223275 is_a: CL:0002086 ! specialized cardiac myocyte relationship: part_of UBERON:0009966 ! internodal tract created_by: tmeehan creation_date: 2010-08-23T11:24:11Z [Term] id: CL:0002098 name: regular cardiac myocyte namespace: cell def: "A cardiac myocyte that is connected to other cardiac myocytes by transverse intercalated discs (GO:0014704) at a regular interval." [] synonym: "regular cardiac muscle cell" EXACT [] synonym: "regular cardiac muscle fiber" EXACT [] xref: FMA:67967 is_a: CL:0000746 ! cardiac muscle cell created_by: tmeehan creation_date: 2010-08-23T11:33:10Z [Term] id: CL:0002100 name: regular interventricular cardiac myocyte namespace: cell def: "A regular cardiac myocyte of the interventricular region of the heart." [] xref: FMA:228792 is_a: CL:0002098 ! regular cardiac myocyte created_by: tmeehan creation_date: 2010-08-23T11:40:52Z [Term] id: CL:0002129 name: regular atrial cardiac myocyte namespace: cell def: "Regular cardiac myocyte of a cardiac atrium." [] synonym: "atrial cardiac muscle cell" EXACT [] synonym: "atrial myocyte" EXACT [] synonym: "regular atrial cardiac muscle fiber" EXACT [] synonym: "regular cardiac muscle cell of atrium" EXACT [] xref: FMA:83108 is_a: CL:0002098 ! regular cardiac myocyte created_by: tmeehan creation_date: 2010-08-23T11:41:03Z [Term] id: CL:0002130 name: regular interatrial cardiac myocyte namespace: cell def: "A cardiac myocyte of the interatrial region of the heart." [] xref: FMA:228790 is_a: CL:0002098 ! regular cardiac myocyte created_by: tmeehan creation_date: 2010-08-23T11:41:09Z [Term] id: CL:0002131 name: regular ventricular cardiac myocyte namespace: cell def: "Regular cardiac myocyte of a cardiac ventricle." [] synonym: "regular cardiac muscle cell of ventricle" EXACT [] synonym: "regular ventricular cardiac muscle fiber" EXACT [] synonym: "ventricular cardiac muscle cell" BROAD [] synonym: "ventricular myocyte" EXACT [] xref: FMA:83109 is_a: CL:0002098 ! regular cardiac myocyte created_by: tmeehan creation_date: 2010-08-23T11:41:13Z [Term] id: CL:0002138 name: endothelial cell of lymphatic vessel namespace: cell alt_id: CL:1000421 def: "A endothelial cell of a lymphatic vessel. The border of the oak leaf-shaped endothelial cell of initial lymphatics are joined by specialized buttons. The discontinuous feature of buttons distinguishes them from zippers in collecting lymphatics, but both types of junctions are composed of proteins typical of adherens junctions and tight junctions found in the endothelium of blood vessels. Buttons seal the sides of flaps of the oak leaf-shaped endothelial cell, leaving open the tips of flaps as routes for fluid entry without disassembly and reformation of intercellular junctions." [] synonym: "LEC" EXACT [] synonym: "lymphatic endothelial cell" EXACT [] xref: BTO:0004167 xref: FMA:68458 relationship: part_of UBERON:0001473 ! lymphatic vessel created_by: tmeehan creation_date: 2010-08-24T02:05:28Z [Term] id: CL:0002144 name: capillary endothelial cell namespace: cell def: "An endothelial cell found in capillaries." [] xref: BTO:0004956 xref: CALOHA:TS-0112 xref: FMA:67756 is_a: CL:0000071 ! blood vessel endothelial cell intersection_of: CL:0000071 ! blood vessel endothelial cell intersection_of: part_of UBERON:0001915 ! endothelium of capillary relationship: part_of UBERON:0001915 ! endothelium of capillary created_by: tmeehan creation_date: 2010-08-24T10:15:00Z [Term] id: CL:0002262 name: endothelial cell of sinusoid namespace: cell alt_id: CL:1000403 def: "An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver." [] xref: FMA:63134 relationship: part_of UBERON:0003909 ! sinusoid created_by: tmeehan creation_date: 2010-09-14T10:57:26Z [Term] id: CL:0002350 name: endocardial cell namespace: cell alt_id: CL:1000475 def: "An endothelial cell that lines the intracavitary lumen of the heart, separating the circulating blood from the underlying myocardium. This cell type releases a number of vasoactive substances including prostacyclin, nitrous oxide and endothelin." [] synonym: "endocardial endothelial cell" EXACT [] synonym: "endothelial cell of endocardium" EXACT [] xref: FMA:75621 is_a: CL:0010008 ! cardiac endothelial cell relationship: part_of UBERON:0002165 ! endocardium created_by: tmeehan creation_date: 2010-09-21T04:33:05Z [Term] id: CL:0002494 name: cardiocyte namespace: cell def: "A cell located in the heart, including both muscle and non muscle cells." [] comment: From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart. synonym: "heart cell" EXACT [] xref: BTO:0001539 xref: CALOHA:TS-0115 xref: FMA:83808 xref: FMA:84791 is_a: BFO:0000002 relationship: part_of UBERON:0007100 ! primary circulatory organ created_by: tmeehan creation_date: 2010-12-07T09:37:22Z [Term] id: CL:0002495 name: fetal cardiomyocyte namespace: cell def: "A fetal and neonatal heart cell that undergoes proliferation and is not yet terminally differentiated into a binucleate or a multinucleate cardiac myocyte." [] synonym: "embryonic cardiomyocyte" EXACT [] synonym: "neonatal cardiomyocyte" EXACT [] is_a: CL:0000746 ! cardiac muscle cell created_by: tmeehan creation_date: 2010-12-07T09:50:41Z [Term] id: CL:0002539 name: aortic smooth muscle cell namespace: cell def: "A smooth muscle cell of the aorta." [] xref: BTO:0004577 is_a: CL:0000359 ! vascular associated smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0004178 ! aorta smooth muscle tissue relationship: part_of UBERON:0004178 ! aorta smooth muscle tissue created_by: tmeehan creation_date: 2011-02-28T01:42:12Z [Term] id: CL:0002543 name: vein endothelial cell namespace: cell alt_id: CL:1000393 def: "An endothelial cell that is part of the vein." [] synonym: "endothelial cell of vein" EXACT [] synonym: "venous endothelial cell" EXACT [] xref: FMA:62104 xref: KUPO:0001099 is_a: CL:0000071 ! blood vessel endothelial cell intersection_of: CL:0000071 ! blood vessel endothelial cell intersection_of: part_of UBERON:0001638 ! vein relationship: part_of UBERON:0001638 ! vein created_by: tmeehan creation_date: 2011-02-28T03:48:11Z [Term] id: CL:0002544 name: aortic endothelial cell namespace: cell def: "An arterial endothelial cell that is part of the aorta endothelium." [] xref: BTO:0003245 xref: CALOHA:TS-0047 is_a: CL:1000413 ! endothelial cell of artery created_by: tmeehan creation_date: 2011-02-28T03:54:42Z [Term] id: CL:0002545 name: thoracic aorta endothelial cell namespace: cell def: "An endothelial cell that is part of the thoracic endothelium." [] is_a: CL:0002544 ! aortic endothelial cell intersection_of: CL:0002544 ! aortic endothelial cell intersection_of: part_of UBERON:0001515 ! thoracic aorta relationship: part_of UBERON:0001515 ! thoracic aorta created_by: tmeehan creation_date: 2011-02-28T03:59:09Z [Term] id: CL:0002547 name: fibroblast of the aortic adventitia namespace: cell def: "A fibroblast of the aortic adventitia." [] is_a: CL:1000306 ! fibroblast of tunica adventitia of artery intersection_of: CL:1000306 ! fibroblast of tunica adventitia of artery intersection_of: part_of UBERON:0004664 ! aorta tunica adventitia relationship: part_of UBERON:0004664 ! aorta tunica adventitia created_by: tmeehan creation_date: 2011-02-28T04:43:41Z [Term] id: CL:0002548 name: fibroblast of cardiac tissue namespace: cell def: "A fibroblast that is part of the heart." [] synonym: "cardiac fibroblast" EXACT [] is_a: CL:0002494 ! cardiocyte relationship: part_of UBERON:0000948 ! heart created_by: tmeehan creation_date: 2011-02-28T04:57:44Z [Term] id: CL:0002549 name: fibroblast of choroid plexus namespace: cell def: "A fibroblast that is part of the choroid plexus." [] relationship: part_of UBERON:0001886 ! choroid plexus created_by: tmeehan creation_date: 2011-02-28T05:01:39Z [Term] id: CL:0002554 name: fibroblast of lymphatic vessel namespace: cell def: "A fibroblast of the lymphatic system." [] relationship: part_of UBERON:0001473 ! lymphatic vessel created_by: tmeehan creation_date: 2011-02-28T05:16:18Z [Term] id: CL:0002557 name: fibroblast of pulmonary artery namespace: cell def: "A fibroblast of pulmonary artery." [] relationship: part_of UBERON:0002012 ! pulmonary artery created_by: tmeehan creation_date: 2011-02-28T05:22:27Z [Term] id: CL:0002585 name: retinal blood vessel endothelial cell namespace: cell def: "A blood vessel endothelial cell that is part of the retina." [] is_a: CL:0000071 ! blood vessel endothelial cell created_by: tmeehan creation_date: 2011-03-06T03:28:27Z [Term] id: CL:0002588 name: smooth muscle cell of the umbilical vein namespace: cell def: "A smooth muscle cell of the umbilical vein." [] is_a: CL:0000359 ! vascular associated smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0002066 ! umbilical vein relationship: part_of UBERON:0002066 ! umbilical vein created_by: tmeehan creation_date: 2011-03-06T05:00:51Z [Term] id: CL:0002589 name: smooth muscle cell of the brachiocephalic vasculature namespace: cell def: "A smooth muscle cell of the bachiocephalic vasculature." [] is_a: CL:0000359 ! vascular associated smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0001529 ! brachiocephalic artery relationship: part_of UBERON:0001529 ! brachiocephalic artery created_by: tmeehan creation_date: 2011-03-06T05:00:58Z [Term] id: CL:0002590 name: smooth muscle cell of the brain vasculature namespace: cell def: "A vascular associated smooth muscle cell of the brain vasculature." [] is_a: CL:0000359 ! vascular associated smooth muscle cell created_by: tmeehan creation_date: 2011-03-06T05:01:20Z [Term] id: CL:0002591 name: smooth muscle cell of the pulmonary artery namespace: cell def: "A smooth muscle of the pulmonary artery." [] xref: BTO:0003336 is_a: CL:0000359 ! vascular associated smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0002012 ! pulmonary artery relationship: part_of UBERON:0002012 ! pulmonary artery created_by: tmeehan creation_date: 2011-03-06T05:01:28Z [Term] id: CL:0002592 name: smooth muscle cell of the coronary artery namespace: cell def: "A smooth muscle cell of the coronary artery." [] is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:0002494 ! cardiocyte intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0001621 ! coronary artery relationship: part_of UBERON:0001621 ! coronary artery created_by: tmeehan creation_date: 2011-03-06T05:01:34Z [Term] id: CL:0002593 name: smooth muscle cell of the internal thoracic artery namespace: cell def: "A smooth muscle of the internal thoracic artery." [] is_a: CL:0002595 ! smooth muscle cell of the subclavian artery intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0002456 ! internal thoracic artery relationship: part_of UBERON:0002456 ! internal thoracic artery created_by: tmeehan creation_date: 2011-03-06T05:01:41Z [Term] id: CL:0002594 name: smooth muscle cell of the umbilical artery namespace: cell def: "A smooth muscle cell of the umbilical artery." [] is_a: CL:0000359 ! vascular associated smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0001310 ! umbilical artery relationship: part_of UBERON:0001310 ! umbilical artery created_by: tmeehan creation_date: 2011-03-06T05:01:48Z [Term] id: CL:0002595 name: smooth muscle cell of the subclavian artery namespace: cell def: "A smooth muscle cell of the subclavian artery." [] is_a: CL:0000359 ! vascular associated smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0001533 ! subclavian artery relationship: part_of UBERON:0001533 ! subclavian artery created_by: tmeehan creation_date: 2011-03-06T05:01:52Z [Term] id: CL:0002596 name: smooth muscle cell of the carotid artery namespace: cell def: "Smooth muscle cell of the carotid artery." [] is_a: CL:0000359 ! vascular associated smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0005396 ! carotid artery segment relationship: part_of UBERON:0005396 ! carotid artery segment created_by: tmeehan creation_date: 2011-03-06T05:01:56Z [Term] id: CL:0002618 name: endothelial cell of umbilical vein namespace: cell def: "An endothelial cell of the umbilical vein." [] xref: BTO:0004296 is_a: CL:0002543 ! vein endothelial cell relationship: part_of UBERON:0002066 ! umbilical vein created_by: tmeehan creation_date: 2011-03-14T11:36:51Z [Term] id: CL:0002651 name: endothelial cell of venous sinus of spleen namespace: cell def: "An endothelial cell that is part of the venous sinus of spleen. This endothelial cell has an elongated, spindle-shaped, flattened morphology that is parallel to long axis of sinus. This cell type rests on a basement membrane interrupted by numerous narrow slits." [] synonym: "stave cell" EXACT [] xref: FMA:72140 is_a: CL:0002262 ! endothelial cell of sinusoid created_by: tmeehan creation_date: 2011-07-08T03:06:49Z [Term] id: CL:0002652 name: endothelial cell of high endothelial venule namespace: cell def: "A venule endothelial cell that is cubodial, expresses leukocyte-specific receptors, and allows for passage of lymphocytes into bloodstream." [] comment: Markers expressed on HEV include: MAdCAM-1,PNAd (sulfated and glycosylated molecules, i.e. GlyCAM-1, CD34, endomucin, nepmucin), ICAM-1, ICAM-2,Fuc-TVII, beta 3GlcNAcT-3, GlcNAc6ST2,CCL21, CCL19, CXCL13, CXCL12, Autotaxin, DARC, angiomodulin, LRHG. synonym: "endothelial cell of postcapillary venule of lymph node" EXACT [] synonym: "HEV cell" EXACT [] xref: FMA:67759 is_a: CL:1000414 ! endothelial cell of venule created_by: tmeehan creation_date: 2011-07-08T03:14:10Z [Term] id: CL:0002653 name: squamous endothelial cell namespace: cell def: "A endothelial cell of the venule that is squamous shaped. This is in contrast to the cubodial shape of high endothelial venule cells." [] is_a: CL:1000414 ! endothelial cell of venule created_by: tmeehan creation_date: 2011-07-08T03:31:25Z [Term] id: CL:0002663 name: myocardial endocrine cell of atrium namespace: cell def: "A myocardial endocrine cell that is part of the atrium." [] xref: FMA:83389 is_a: CL:0002074 ! myocardial endocrine cell intersection_of: CL:0002074 ! myocardial endocrine cell intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium created_by: tmeehan creation_date: 2011-07-11T02:45:39Z [Term] id: CL:0002671 name: endothelial stalk cell namespace: cell def: "An endothelial stalk cell is a specialized endothelial cell that follows behind the tip cell of an angiogenic sprout." [] is_a: CL:0000071 ! blood vessel endothelial cell created_by: tmeehan creation_date: 2011-08-16T01:49:32Z [Term] id: CL:0008022 name: endocardial cushion cell def: "A mesenchymal cell of the endocardial cushion. These cells develop via an epithelial to mesenchymal transition when endocardial cells break cell-to-cell contacts and migrate into the cardiac jelly. Cells from this population form the heart septa and valves." [] is_a: CL:0002494 ! cardiocyte relationship: part_of UBERON:0002062 ! endocardial cushion [Term] id: CL:0010002 name: epithelial cell of umbilical artery def: "a epithelial cell that is part_of a umbilical artery" [] synonym: "umbilical artery epithelial cell" EXACT [] is_a: BFO:0000004 relationship: part_of UBERON:0001310 ! umbilical artery created_by: GOC:cjm [Term] id: CL:0010005 name: atrioventricular bundle cell def: "A specialized cardiomyocyte that transmit signals from the AV node to the cardiac Purkinje fibers." [] synonym: "AV bundle cell" EXACT [] is_a: CL:0010007 ! His-Purkinje system cell relationship: part_of UBERON:0002353 ! atrioventricular bundle [Term] id: CL:0010006 name: cardiac blood vessel endothelial cell is_a: CL:0000071 ! blood vessel endothelial cell is_a: CL:0010008 ! cardiac endothelial cell intersection_of: CL:0000071 ! blood vessel endothelial cell intersection_of: part_of UBERON:0000948 ! heart [Term] id: CL:0010007 name: His-Purkinje system cell is_a: BFO:0000004 relationship: part_of UBERON:0004146 ! His-Purkinje system [Term] id: CL:0010008 name: cardiac endothelial cell is_a: CL:0002494 ! cardiocyte relationship: part_of UBERON:0000948 ! heart [Term] id: CL:0010020 name: cardiac glial cell is_a: CL:0002494 ! cardiocyte relationship: part_of UBERON:0000948 ! heart [Term] id: CL:0010022 name: cardiac neuron is_a: CL:0002494 ! cardiocyte relationship: part_of UBERON:0000948 ! heart [Term] id: CL:1000147 name: heart valve cell is_a: BFO:0000004 relationship: part_of UBERON:0000948 ! heart [Term] id: CL:1000287 name: myocyte of anterior internodal tract namespace: cell def: "A muscle cell that is part of the anterior internodal tract." [] xref: FMA:223276 is_a: CL:0002096 ! internodal tract myocyte [Term] id: CL:1000288 name: myocyte of atrial branch of anterior internodal tract namespace: cell def: "A muscle cell that is part of the atrial branch of anterior internodal tract." [] xref: FMA:223277 is_a: CL:0002096 ! internodal tract myocyte [Term] id: CL:1000289 name: myocyte of atrial septal branch of anterior internodal tract namespace: cell def: "A muscle cell that is part of the atrial septal branch of anterior internodal tract." [] xref: FMA:223278 is_a: CL:0002096 ! internodal tract myocyte [Term] id: CL:1000290 name: myocyte of middle internodal tract namespace: cell def: "A muscle cell that is part of the middle internodal tract." [] xref: FMA:223279 is_a: CL:0002096 ! internodal tract myocyte [Term] id: CL:1000291 name: myocyte of posterior internodal tract namespace: cell def: "A muscle cell that is part of the posterior internodal tract." [] xref: FMA:223280 is_a: CL:0002096 ! internodal tract myocyte [Term] id: CL:1000306 name: fibroblast of tunica adventitia of artery namespace: cell def: "A fibroblast that is part of the tunica adventitia of artery." [] xref: FMA:261285 relationship: part_of UBERON:0005734 ! tunica adventitia of blood vessel [Term] id: CL:1000309 name: epicardial adipocyte namespace: cell def: "A fat cell that is part of the epicardial fat." [] synonym: "adipocyte of epicardial fat" EXACT [] synonym: "epicardial fat cell" EXACT [] xref: FMA:261293 is_a: CL:0002494 ! cardiocyte relationship: part_of UBERON:0002348 ! epicardium [Term] id: CL:1000310 name: adipocyte of epicardial fat of right ventricle namespace: cell def: "A fat cell that is part of the epicardial fat of right ventricle." [] synonym: "epicardial adipocyte of right ventricle" EXACT [] synonym: "epicardial fat cell of right ventricle" EXACT [] xref: FMA:261297 is_a: CL:1000309 ! epicardial adipocyte intersection_of: CL:1000309 ! epicardial adipocyte intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: CL:1000311 name: adipocyte of epicardial fat of left ventricle namespace: cell def: "A fat cell that is part of the epicardial fat of left ventricle." [] synonym: "epicardial adipocyte of left ventricle" EXACT [] synonym: "epicardial fat cell of left ventricle" EXACT [] xref: FMA:261300 is_a: CL:1000309 ! epicardial adipocyte intersection_of: CL:1000309 ! epicardial adipocyte intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: CL:1000361 name: transitional myocyte of interatrial septum namespace: cell def: "A transitional myocyte that is part of the interatrial septum." [] xref: FMA:263152 is_a: CL:0002073 ! transitional myocyte is_a: CL:2000022 ! cardiac septum native cell intersection_of: CL:0002073 ! transitional myocyte intersection_of: part_of UBERON:0002085 ! interatrial septum relationship: part_of UBERON:0002085 ! interatrial septum [Term] id: CL:1000362 name: transitional myocyte of interventricular septum namespace: cell def: "A transitional myocyte that is part of the interventricular septum." [] xref: FMA:263154 is_a: CL:0002073 ! transitional myocyte is_a: CL:2000022 ! cardiac septum native cell intersection_of: CL:0002073 ! transitional myocyte intersection_of: part_of UBERON:0002094 ! interventricular septum relationship: part_of UBERON:0002094 ! interventricular septum [Term] id: CL:1000363 name: transitional myocyte of atrial branch of anterior internodal tract namespace: cell def: "A transitional myocyte that is part of the atrial branch of anterior internodal tract." [] xref: FMA:263156 is_a: CL:1000480 ! transitional myocyte of internodal tract [Term] id: CL:1000364 name: transitional myocyte of anterior internodal tract namespace: cell def: "A transitional myocyte that is part of the anterior internodal tract." [] xref: FMA:263158 is_a: CL:1000480 ! transitional myocyte of internodal tract [Term] id: CL:1000365 name: transitional myocyte of atrial septal branch of anterior internodal tract namespace: cell def: "A transitional myocyte that is part of the atrial septal branch of anterior internodal tract." [] xref: FMA:263160 is_a: CL:1000480 ! transitional myocyte of internodal tract [Term] id: CL:1000366 name: transitional myocyte of middle internodal tract namespace: cell def: "A transitional myocyte that is part of the middle internodal tract." [] xref: FMA:263162 is_a: CL:1000480 ! transitional myocyte of internodal tract [Term] id: CL:1000367 name: transitional myocyte of posterior internodal tract namespace: cell def: "A transitional myocyte that is part of the posterior internodal tract." [] xref: FMA:263164 is_a: CL:1000480 ! transitional myocyte of internodal tract [Term] id: CL:1000368 name: transitional myocyte of anterior division of left branch of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the anterior division of left branch of atrioventricular bundle." [] xref: FMA:263166 is_a: CL:1000370 ! transitional myocyte of left branch of atrioventricular bundle [Term] id: CL:1000369 name: transitional myocyte of septal division of left branch of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the septal division of left branch of atrioventricular bundle." [] xref: FMA:263168 is_a: CL:1000370 ! transitional myocyte of left branch of atrioventricular bundle [Term] id: CL:1000370 name: transitional myocyte of left branch of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the left branch of atrioventricular bundle." [] xref: FMA:263170 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle intersection_of: CL:0002073 ! transitional myocyte intersection_of: part_of UBERON:0005986 ! left branch of atrioventricular bundle relationship: part_of UBERON:0005986 ! left branch of atrioventricular bundle [Term] id: CL:1000371 name: transitional myocyte of right branch of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the right branch of atrioventricular bundle." [] xref: FMA:263172 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle intersection_of: CL:0002073 ! transitional myocyte intersection_of: part_of UBERON:0005987 ! right branch of atrioventricular bundle relationship: part_of UBERON:0005987 ! right branch of atrioventricular bundle [Term] id: CL:1000372 name: transitional myocyte of atrial part of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the atrial part of atrioventricular bundle." [] xref: FMA:263174 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle [Term] id: CL:1000373 name: transitional myocyte of ventricular part of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the ventricular part of atrioventricular bundle." [] xref: FMA:263176 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle [Term] id: CL:1000374 name: transitional myocyte of posterior division of left branch of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the posterior division of left branch of atrioventricular bundle." [] xref: FMA:263178 is_a: CL:1000370 ! transitional myocyte of left branch of atrioventricular bundle [Term] id: CL:1000375 name: myocardial endocrine cell of septal division of left branch of atrioventricular bundle namespace: cell def: "A myocardial endocrine cell that is part of the septal division of left branch of atrioventricular bundle." [] xref: FMA:263180 is_a: CL:0002074 ! myocardial endocrine cell is_a: CL:0010005 ! atrioventricular bundle cell is_a: CL:2000046 ! ventricular cardiac muscle cell relationship: part_of UBERON:0005986 ! left branch of atrioventricular bundle [Term] id: CL:1000376 name: Purkinje myocyte of interventricular septum namespace: cell def: "A Purkinje myocyte that is part of the interventricular septum." [] xref: FMA:263182 is_a: CL:0002068 ! Purkinje myocyte is_a: CL:2000022 ! cardiac septum native cell intersection_of: CL:0002068 ! Purkinje myocyte intersection_of: part_of UBERON:0002094 ! interventricular septum relationship: part_of UBERON:0002094 ! interventricular septum [Term] id: CL:1000397 name: endothelial cell of venous sinus of red pulp of spleen namespace: cell def: "An endothelial cell that is part of the venous sinus of red pulp of spleen." [] comment: todo - add logical definition to UBERON:0009967 xref: FMA:62817 is_a: CL:0002651 ! endothelial cell of venous sinus of spleen relationship: part_of UBERON:0009967 ! spleen venous sinus [Term] id: CL:1000398 name: endothelial cell of hepatic sinusoid namespace: cell def: "An endothelial cell that is part of the hepatic sinusoid." [] synonym: "endotheliocyte of hepatic sinusoid" EXACT [] xref: FMA:62911 is_a: CL:0002262 ! endothelial cell of sinusoid intersection_of: CL:0002262 ! endothelial cell of sinusoid intersection_of: part_of UBERON:0001281 ! hepatic sinusoid relationship: part_of UBERON:0001281 ! hepatic sinusoid [Term] id: CL:1000409 name: myocyte of sinoatrial node namespace: cell def: "A muscle cell that is part of the sinoatrial node." [] synonym: "myocyte of sinoatrial node" EXACT [] synonym: "SA nodal myocyte" EXACT [] synonym: "SA node cardiac muscle cell" EXACT [] synonym: "sinoatrial node cell" EXACT [] synonym: "sinoatrial node myocyte" EXACT [] synonym: "sinuatrial node myocyte" EXACT [] xref: FMA:67102 is_a: CL:0002072 ! nodal myocyte relationship: part_of UBERON:0002351 ! sinoatrial node [Term] id: CL:1000410 name: myocyte of atrioventricular node namespace: cell def: "A muscle cell that is part of the atrioventricular node." [] synonym: "atrioventricular node cell" EXACT [] synonym: "atrioventricular node myocyte" EXACT [] synonym: "AV nodal myocyte" EXACT [] synonym: "AV node cardiac muscle cell" EXACT [] synonym: "AV node cell" EXACT [] xref: FMA:67106 is_a: CL:0002072 ! nodal myocyte is_a: CL:2000022 ! cardiac septum native cell relationship: part_of UBERON:0002352 ! atrioventricular node [Term] id: CL:1000412 name: endothelial cell of arteriole namespace: cell def: "An endothelial cell that is part of the arteriole." [] xref: FMA:67760 xref: KUPO:0001097 is_a: CL:0000071 ! blood vessel endothelial cell relationship: part_of UBERON:0001980 ! arteriole [Term] id: CL:1000413 name: endothelial cell of artery namespace: cell alt_id: CL:0002542 def: "A blood vessel endothelial cell that is part of an arterial endothelium." [] synonym: "arterial endothelial cell" EXACT [] xref: BTO:0004758 xref: FMA:67761 xref: KUPO:0001095 is_a: CL:0000071 ! blood vessel endothelial cell relationship: part_of UBERON:0001917 ! endothelium of artery [Term] id: CL:1000414 name: endothelial cell of venule namespace: cell def: "An endothelial cell that is part of the venule." [] xref: FMA:67762 relationship: part_of UBERON:0001979 ! venule [Term] id: CL:1000477 name: cardiac pacemaker cell of sinoatrial node namespace: cell def: "A nodal myocyte that is part of the sinoatrial node." [] synonym: "cardiac pacemaker cell of sinuatrial node" EXACT [] synonym: "pacemaker cell of sinoatrial node" EXACT [] synonym: "pacemaker cell of sinuatrial node" EXACT [] xref: FMA:83383 is_a: CL:1000409 ! myocyte of sinoatrial node [Term] id: CL:1000478 name: transitional myocyte of sinoatrial node namespace: cell def: "A transitional myocyte that is part of the sinoatrial node." [] synonym: "transitinal myocyte of sinuatrial node" EXACT [] xref: FMA:83384 is_a: CL:0002073 ! transitional myocyte is_a: CL:1000409 ! myocyte of sinoatrial node intersection_of: CL:0002073 ! transitional myocyte intersection_of: part_of UBERON:0002351 ! sinoatrial node [Term] id: CL:1000479 name: Purkinje myocyte of atrioventricular node namespace: cell def: "A Purkinje myocyte that is part of the atrioventricular node." [] xref: FMA:83386 is_a: CL:0002068 ! Purkinje myocyte is_a: CL:1000410 ! myocyte of atrioventricular node intersection_of: CL:0002068 ! Purkinje myocyte intersection_of: part_of UBERON:0002352 ! atrioventricular node [Term] id: CL:1000480 name: transitional myocyte of internodal tract namespace: cell def: "A transitional myocyte that is part of the internodal tract." [] xref: FMA:83387 is_a: CL:0002073 ! transitional myocyte is_a: CL:0002096 ! internodal tract myocyte intersection_of: CL:0002073 ! transitional myocyte intersection_of: part_of UBERON:0009966 ! internodal tract [Term] id: CL:1000481 name: transitional myocyte of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the atrioventricular bundle." [] xref: FMA:83388 xref: FMA:83885 is_a: CL:0002073 ! transitional myocyte is_a: CL:0010005 ! atrioventricular bundle cell is_a: CL:2000046 ! ventricular cardiac muscle cell intersection_of: CL:0002073 ! transitional myocyte intersection_of: part_of UBERON:0002353 ! atrioventricular bundle [Term] id: CL:1000482 name: myocardial endocrine cell of interventricular septum namespace: cell def: "A myocardial endocrine cell that is part of the interventricular septum." [] xref: FMA:83390 is_a: CL:0002074 ! myocardial endocrine cell is_a: CL:2000022 ! cardiac septum native cell intersection_of: CL:0002074 ! myocardial endocrine cell intersection_of: part_of UBERON:0002094 ! interventricular septum relationship: part_of UBERON:0002094 ! interventricular septum [Term] id: CL:1000483 name: Purkinje myocyte of internodal tract namespace: cell def: "A Purkinje myocyte that is part of the internodal tract." [] xref: FMA:83392 is_a: CL:0002068 ! Purkinje myocyte is_a: CL:0002096 ! internodal tract myocyte intersection_of: CL:0002068 ! Purkinje myocyte intersection_of: part_of UBERON:0009966 ! internodal tract [Term] id: CL:1000484 name: Purkinje myocyte of atrioventricular bundle namespace: cell def: "A Purkinje myocyte that is part of the atrioventricular bundle." [] xref: FMA:83393 is_a: CL:0002068 ! Purkinje myocyte is_a: CL:0010005 ! atrioventricular bundle cell is_a: CL:2000046 ! ventricular cardiac muscle cell intersection_of: CL:0002068 ! Purkinje myocyte intersection_of: part_of UBERON:0002353 ! atrioventricular bundle [Term] id: CL:1000742 name: glomerular mesangial cell namespace: cell def: "Intraglomerular mesangial cells are specialized pericytes located among the glomerular capillaries within a renal corpuscle of a kidney." [] synonym: "intraglomerular mesangial cell" EXACT [] xref: KUPO:0001032 relationship: part_of UBERON:0002320 ! glomerular mesangium [Term] id: CL:1000854 name: kidney blood vessel cell namespace: cell xref: KUPO:0001014 relationship: part_of UBERON:0003517 ! kidney blood vessel [Term] id: CL:1000891 name: kidney arterial blood vessel cell namespace: cell xref: KUPO:0001029 is_a: CL:1000854 ! kidney blood vessel cell intersection_of: CL:1000854 ! kidney blood vessel cell intersection_of: part_of UBERON:0003644 ! kidney arterial blood vessel relationship: part_of UBERON:0003644 ! kidney arterial blood vessel [Term] id: CL:1000892 name: kidney capillary endothelial cell namespace: cell xref: KUPO:0001030 is_a: CL:0000071 ! blood vessel endothelial cell is_a: CL:1000854 ! kidney blood vessel cell intersection_of: CL:1000854 ! kidney blood vessel cell intersection_of: part_of UBERON:0003527 ! kidney capillary relationship: part_of UBERON:0003527 ! kidney capillary [Term] id: CL:1000893 name: kidney venous blood vessel cell namespace: cell xref: KUPO:0001031 is_a: CL:1000854 ! kidney blood vessel cell intersection_of: CL:1000854 ! kidney blood vessel cell intersection_of: part_of UBERON:0001140 ! renal vein relationship: part_of UBERON:0001140 ! renal vein [Term] id: CL:1001005 name: glomerular capillary endothelial cell namespace: cell xref: KUPO:0001037 is_a: CL:0002144 ! capillary endothelial cell is_a: CL:1000892 ! kidney capillary endothelial cell intersection_of: CL:1000892 ! kidney capillary endothelial cell intersection_of: part_of UBERON:0004294 ! glomerular capillary endothelium relationship: part_of UBERON:0004294 ! glomerular capillary endothelium [Term] id: CL:1001006 name: kidney afferent arteriole cell namespace: cell xref: KUPO:0001038 is_a: CL:1000891 ! kidney arterial blood vessel cell intersection_of: CL:1000891 ! kidney arterial blood vessel cell intersection_of: part_of UBERON:0004639 ! renal afferent arteriole relationship: part_of UBERON:0004639 ! renal afferent arteriole [Term] id: CL:1001009 name: kidney efferent arteriole cell namespace: cell xref: KUPO:0001041 is_a: CL:1000891 ! kidney arterial blood vessel cell intersection_of: CL:1000891 ! kidney arterial blood vessel cell intersection_of: part_of UBERON:0004640 ! renal efferent arteriole relationship: part_of UBERON:0004640 ! renal efferent arteriole [Term] id: CL:1001033 name: peritubular capillary endothelial cell namespace: cell xref: KUPO:0001065 is_a: CL:1000892 ! kidney capillary endothelial cell intersection_of: CL:1000892 ! kidney capillary endothelial cell intersection_of: part_of UBERON:0005272 ! peritubular capillary relationship: part_of UBERON:0005272 ! peritubular capillary [Term] id: CL:1001036 name: vasa recta cell namespace: cell xref: KUPO:0001068 is_a: CL:0002543 ! vein endothelial cell is_a: CL:1000892 ! kidney capillary endothelial cell is_a: CL:1000893 ! kidney venous blood vessel cell intersection_of: CL:1000892 ! kidney capillary endothelial cell intersection_of: part_of UBERON:0004726 ! vasa recta relationship: part_of UBERON:0004726 ! vasa recta [Term] id: CL:1001045 name: kidney cortex artery cell namespace: cell xref: KUPO:0001077 is_a: CL:1000891 ! kidney arterial blood vessel cell intersection_of: CL:1000891 ! kidney arterial blood vessel cell intersection_of: part_of UBERON:0005268 ! renal cortex artery relationship: part_of UBERON:0005268 ! renal cortex artery [Term] id: CL:1001052 name: kidney cortex vein cell namespace: cell xref: KUPO:0001084 is_a: CL:1000893 ! kidney venous blood vessel cell intersection_of: CL:1000893 ! kidney venous blood vessel cell intersection_of: part_of UBERON:0005269 ! renal cortex vein relationship: part_of UBERON:0005269 ! renal cortex vein [Term] id: CL:1001064 name: kidney artery smooth muscle cell namespace: cell comment: Note that the source of this term is KUPO:0001096 (artery smooth muscle cell), which we believe actually denotes the kidney specific structure. xref: KUPO:0001096 is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:1000891 ! kidney arterial blood vessel cell [Term] id: CL:1001066 name: kidney arteriole smooth muscle cell namespace: cell comment: Note that the source of this term is KUPO:0001098 (arteriole smooth muscle cell), which we believe actually denotes the kidney specific structure. xref: KUPO:0001098 is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:1000891 ! kidney arterial blood vessel cell [Term] id: CL:1001068 name: kidney venous system smooth muscle cell namespace: cell comment: Note that the source of this term is KUPO:0001068 (venous system smooth muscle cell), which we believe actually denotes the kidney specific structure. xref: KUPO:0001100 is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:1000893 ! kidney venous blood vessel cell [Term] id: CL:1001096 name: kidney afferent arteriole endothelial cell namespace: cell xref: KUPO:0001039 is_a: CL:1000412 ! endothelial cell of arteriole is_a: CL:1001006 ! kidney afferent arteriole cell is_a: CL:1001216 ! interlobulary artery endothelial cell [Term] id: CL:1001097 name: kidney afferent arteriole smooth muscle cell namespace: cell xref: KUPO:0001040 is_a: CL:1001006 ! kidney afferent arteriole cell is_a: CL:1001066 ! kidney arteriole smooth muscle cell is_a: CL:1001217 ! interlobulary artery smooth muscle cell [Term] id: CL:1001099 name: kidney efferent arteriole endothelial cell namespace: cell xref: KUPO:0001042 is_a: CL:1000412 ! endothelial cell of arteriole is_a: CL:1001009 ! kidney efferent arteriole cell [Term] id: CL:1001100 name: kidney efferent arteriole smooth muscle cell namespace: cell xref: KUPO:0001043 is_a: CL:1001009 ! kidney efferent arteriole cell is_a: CL:1001066 ! kidney arteriole smooth muscle cell [Term] id: CL:1001123 name: kidney outer medulla peritubular capillary cell namespace: cell xref: KUPO:0001066 is_a: CL:1001033 ! peritubular capillary endothelial cell intersection_of: CL:1001033 ! peritubular capillary endothelial cell intersection_of: part_of UBERON:0006341 ! outer renal medulla peritubular capillary relationship: part_of UBERON:0006341 ! outer renal medulla peritubular capillary [Term] id: CL:1001124 name: kidney cortex peritubular capillary cell namespace: cell xref: KUPO:0001067 is_a: CL:1001033 ! peritubular capillary endothelial cell intersection_of: CL:1001033 ! peritubular capillary endothelial cell intersection_of: part_of UBERON:0006851 ! renal cortex peritubular capillary relationship: part_of UBERON:0006851 ! renal cortex peritubular capillary [Term] id: CL:1001126 name: inner renal medulla vasa recta cell namespace: cell xref: KUPO:0001069 is_a: CL:1001036 ! vasa recta cell intersection_of: CL:1001036 ! vasa recta cell intersection_of: part_of UBERON:0004776 ! inner renal medulla vasa recta relationship: part_of UBERON:0004776 ! inner renal medulla vasa recta [Term] id: CL:1001127 name: outer renal medulla vasa recta cell namespace: cell xref: KUPO:0001070 is_a: CL:1001036 ! vasa recta cell intersection_of: CL:1001036 ! vasa recta cell intersection_of: part_of UBERON:0004775 ! outer renal medulla vasa recta relationship: part_of UBERON:0004775 ! outer renal medulla vasa recta [Term] id: CL:1001131 name: vasa recta ascending limb cell namespace: cell xref: KUPO:0001074 is_a: CL:1001036 ! vasa recta cell intersection_of: CL:1001036 ! vasa recta cell intersection_of: part_of UBERON:0009091 ! vasa recta ascending limb relationship: part_of UBERON:0009091 ! vasa recta ascending limb [Term] id: CL:1001135 name: arcuate artery cell namespace: cell xref: KUPO:0001078 is_a: CL:1001045 ! kidney cortex artery cell intersection_of: CL:1001045 ! kidney cortex artery cell intersection_of: part_of UBERON:0001552 ! kidney arcuate artery relationship: part_of UBERON:0001552 ! kidney arcuate artery [Term] id: CL:1001138 name: interlobular artery cell namespace: cell xref: KUPO:0001081 is_a: CL:1001045 ! kidney cortex artery cell intersection_of: CL:1001045 ! kidney cortex artery cell intersection_of: part_of UBERON:0004723 ! interlobular artery relationship: part_of UBERON:0004723 ! interlobular artery [Term] id: CL:1001142 name: arcuate vein cell namespace: cell xref: KUPO:0001085 is_a: CL:1001052 ! kidney cortex vein cell intersection_of: CL:1001052 ! kidney cortex vein cell intersection_of: part_of UBERON:0004719 ! kidney arcuate vein relationship: part_of UBERON:0004719 ! kidney arcuate vein [Term] id: CL:1001145 name: interlobular vein cell namespace: cell xref: KUPO:0001088 is_a: CL:1001052 ! kidney cortex vein cell intersection_of: CL:1001052 ! kidney cortex vein cell intersection_of: part_of UBERON:0005168 ! renal interlobular vein relationship: part_of UBERON:0005168 ! renal interlobular vein [Term] id: CL:1001209 name: inner medulla vasa recta ascending limb cell namespace: cell xref: KUPO:0001075 is_a: CL:1001126 ! inner renal medulla vasa recta cell is_a: CL:1001131 ! vasa recta ascending limb cell intersection_of: CL:1001131 ! vasa recta ascending limb cell intersection_of: part_of UBERON:0009092 ! inner medulla vasa recta ascending limb relationship: part_of UBERON:0009092 ! inner medulla vasa recta ascending limb [Term] id: CL:1001210 name: outer medulla vasa recta ascending limb cell namespace: cell xref: KUPO:0001076 is_a: CL:1001127 ! outer renal medulla vasa recta cell is_a: CL:1001131 ! vasa recta ascending limb cell intersection_of: CL:1001131 ! vasa recta ascending limb cell intersection_of: part_of UBERON:0009093 ! outer medulla vasa recta ascending limb relationship: part_of UBERON:0009093 ! outer medulla vasa recta ascending limb [Term] id: CL:1001213 name: arcuate artery endothelial cell namespace: cell xref: KUPO:0001079 is_a: CL:1000413 ! endothelial cell of artery is_a: CL:1001135 ! arcuate artery cell [Term] id: CL:1001214 name: arcuate artery smooth muscle cell namespace: cell xref: KUPO:0001080 is_a: CL:1001064 ! kidney artery smooth muscle cell is_a: CL:1001135 ! arcuate artery cell [Term] id: CL:1001216 name: interlobulary artery endothelial cell namespace: cell xref: KUPO:0001082 is_a: CL:1000413 ! endothelial cell of artery is_a: CL:1001138 ! interlobular artery cell [Term] id: CL:1001217 name: interlobulary artery smooth muscle cell namespace: cell xref: KUPO:0001083 is_a: CL:1001064 ! kidney artery smooth muscle cell is_a: CL:1001138 ! interlobular artery cell [Term] id: CL:1001220 name: arcuate vein endothelial cell namespace: cell xref: KUPO:0001086 is_a: CL:0002543 ! vein endothelial cell is_a: CL:1001142 ! arcuate vein cell [Term] id: CL:1001221 name: arcuate vein smooth muscle cell namespace: cell xref: KUPO:0001087 is_a: CL:1001068 ! kidney venous system smooth muscle cell is_a: CL:1001142 ! arcuate vein cell [Term] id: CL:1001223 name: interlobulary vein endothelial cell namespace: cell xref: KUPO:0001089 is_a: CL:0002543 ! vein endothelial cell is_a: CL:1001145 ! interlobular vein cell [Term] id: CL:1001224 name: interlobulary vein smooth muscle cell namespace: cell xref: KUPO:0001090 is_a: CL:1001068 ! kidney venous system smooth muscle cell is_a: CL:1001145 ! interlobular vein cell [Term] id: CL:1001285 name: vasa recta descending limb cell namespace: cell xref: KUPO:0001071 is_a: CL:1001036 ! vasa recta cell intersection_of: CL:1001036 ! vasa recta cell intersection_of: part_of UBERON:0009202 ! vasa recta descending limb relationship: part_of UBERON:0009202 ! vasa recta descending limb [Term] id: CL:1001286 name: inner medulla vasa recta descending limb cell namespace: cell xref: KUPO:0001072 is_a: CL:1001126 ! inner renal medulla vasa recta cell is_a: CL:1001285 ! vasa recta descending limb cell intersection_of: CL:1001285 ! vasa recta descending limb cell intersection_of: part_of UBERON:0009089 ! inner medulla vasa recta descending limb relationship: part_of UBERON:0009089 ! inner medulla vasa recta descending limb [Term] id: CL:1001287 name: outer medulla vasa recta descending limb cell namespace: cell xref: KUPO:0001073 is_a: CL:1001127 ! outer renal medulla vasa recta cell is_a: CL:1001285 ! vasa recta descending limb cell intersection_of: CL:1001285 ! vasa recta descending limb cell intersection_of: part_of UBERON:0009090 ! outer medulla vasa recta descending limb relationship: part_of UBERON:0009090 ! outer medulla vasa recta descending limb [Term] id: CL:1001567 name: lung endothelial cell namespace: cl synonym: "endothelial cell of lung" RELATED [] synonym: "pulmonary vessel endothelial cell" RELATED [] relationship: part_of UBERON:0000102 ! lung vasculature [Term] id: CL:1001568 name: pulmonary artery endothelial cell namespace: cl synonym: "PAEC cell" RELATED [] xref: BTO:0001141 is_a: CL:1000413 ! endothelial cell of artery relationship: part_of UBERON:0005317 ! pulmonary artery endothelium [Term] id: CL:2000008 name: microvascular endothelial cell namespace: cell def: "Any blood vessel endothelial cell that is part of a microvascular endothelium." [] is_a: CL:0000071 ! blood vessel endothelial cell intersection_of: CL:0000071 ! blood vessel endothelial cell intersection_of: part_of UBERON:0008339 ! microvascular endothelium relationship: part_of UBERON:0008339 ! microvascular endothelium created_by: TermGenie creation_date: 2014-06-04T15:07:42Z [Term] id: CL:2000010 name: dermis blood vessel endothelial cell namespace: cell def: "Any blood vessel endothelial cell that is part of a dermis." [] is_a: CL:0000071 ! blood vessel endothelial cell created_by: TermGenie creation_date: 2014-06-04T15:12:06Z [Term] id: CL:2000011 name: dermis lymphatic vessel endothelial cell namespace: cell def: "Any endothelial cell of lymphatic vessel that is part of a dermis." [] is_a: CL:0002138 ! endothelial cell of lymphatic vessel created_by: TermGenie creation_date: 2014-06-04T15:15:08Z [Term] id: CL:2000016 name: lung microvascular endothelial cell namespace: cell def: "Any lung endothelial cell that is part of a microvascular endothelium." [] is_a: CL:1001567 ! lung endothelial cell intersection_of: CL:1001567 ! lung endothelial cell intersection_of: part_of UBERON:0008339 ! microvascular endothelium relationship: part_of UBERON:0008339 ! microvascular endothelium created_by: TermGenie creation_date: 2014-06-04T16:00:56Z [Term] id: CL:2000018 name: endothelial cell of coronary artery namespace: cell def: "Any endothelial cell of artery that is part of a coronary artery." [] is_a: CL:0010006 ! cardiac blood vessel endothelial cell is_a: CL:1000413 ! endothelial cell of artery intersection_of: CL:1000413 ! endothelial cell of artery intersection_of: part_of UBERON:0001621 ! coronary artery relationship: part_of UBERON:0001621 ! coronary artery created_by: TermGenie creation_date: 2014-06-04T17:08:47Z [Term] id: CL:2000022 name: cardiac septum native cell namespace: cell def: "Any native cell that is part of a cardiac septum." [] is_a: BFO:0000004 relationship: part_of UBERON:0002099 ! cardiac septum created_by: TermGenie creation_date: 2014-06-24T23:17:07Z [Term] id: CL:2000040 name: bladder microvascular endothelial cell namespace: cell def: "Any microvascular endothelial cell that is part of a urinary bladder." [] is_a: CL:2000008 ! microvascular endothelial cell created_by: TermGenie creation_date: 2014-07-09T00:04:47Z [Term] id: CL:2000041 name: dermis microvascular lymphatic vessel endothelial cell namespace: cell def: "Any dermis lymphatic vessel endothelial cell that is part of a microvascular endothelium." [] is_a: CL:2000011 ! dermis lymphatic vessel endothelial cell intersection_of: CL:2000011 ! dermis lymphatic vessel endothelial cell intersection_of: part_of UBERON:0008339 ! microvascular endothelium relationship: part_of UBERON:0008339 ! microvascular endothelium created_by: TermGenie creation_date: 2014-07-09T00:09:54Z [Term] id: CL:2000044 name: brain microvascular endothelial cell namespace: cell def: "Any microvascular endothelial cell that is part of a brain." [] is_a: CL:2000008 ! microvascular endothelial cell created_by: TermGenie creation_date: 2014-07-09T00:24:53Z [Term] id: CL:2000046 name: ventricular cardiac muscle cell namespace: cell def: "Any cardiac muscle cell that is part of a cardiac ventricle." [] is_a: CL:0000746 ! cardiac muscle cell intersection_of: CL:0000746 ! cardiac muscle cell intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002082 ! cardiac ventricle created_by: TermGenie creation_date: 2014-08-12T20:50:28Z [Term] id: CL:2000052 name: umbilical artery endothelial cell namespace: cell def: "Any endothelial cell of artery that is part of a umbilical cord." [] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=8010 is_a: CL:1000413 ! endothelial cell of artery created_by: TermGenie creation_date: 2014-10-06T19:01:48Z [Term] id: CL:2000059 name: prostate gland microvascular endothelial cell namespace: cell def: "Any microvascular endothelial cell that is part of a prostate gland." [] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=4400 is_a: CL:2000008 ! microvascular endothelial cell created_by: TermGenie creation_date: 2014-10-07T17:46:27Z [Term] id: CL:2000062 name: placental villus capillary endothelial cell namespace: cell def: "Any capillary endothelial cell that is part of a placenta." [] comment: http://www.ncbi.nlm.nih.gov/books/NBK53245/ is_a: CL:0002144 ! capillary endothelial cell created_by: TermGenie creation_date: 2014-10-07T17:55:56Z [Term] id: CL:2000065 name: ovarian microvascular endothelial cell namespace: cell def: "Any microvascular endothelial cell that is part of a female urethra." [] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=7300 is_a: CL:2000008 ! microvascular endothelial cell created_by: TermGenie creation_date: 2014-10-07T18:18:01Z [Term] id: CL:2000066 name: cardiac ventricle fibroblast namespace: cell def: "Any fibroblast that is part of a cardiac ventricle." [] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=6310 is_a: CL:0002548 ! fibroblast of cardiac tissue relationship: part_of UBERON:0002082 ! cardiac ventricle created_by: TermGenie creation_date: 2014-10-07T18:35:38Z [Term] id: CL:2000067 name: cardiac atrium fibroblast namespace: cell def: "Any fibroblast that is part of a cardiac atrium." [] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=6320 is_a: CL:0002548 ! fibroblast of cardiac tissue relationship: part_of UBERON:0002081 ! cardiac atrium created_by: TermGenie creation_date: 2014-10-07T18:36:54Z [Term] id: CL:2000068 name: pericardium fibroblast namespace: cell def: "Any fibroblast that is part of a pericardium." [] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=6430 relationship: part_of UBERON:0002407 ! pericardium created_by: TermGenie creation_date: 2014-10-07T18:38:06Z [Term] id: CL:2000070 name: optic choroid fibroblast namespace: cell def: "Any fibroblast that is part of a optic choroid." [] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=6620 relationship: part_of UBERON:0001776 ! optic choroid created_by: TermGenie creation_date: 2014-10-07T18:50:43Z [Term] id: CL:2000071 name: mammary microvascular endothelial cell namespace: cell def: "Any microvascular endothelial cell that is part of a breast." [] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=7600 is_a: CL:2000008 ! microvascular endothelial cell created_by: TermGenie creation_date: 2014-10-07T19:55:30Z [Term] id: CL:2000072 name: adipose microvascular endothelial cell namespace: cell def: "Any microvascular endothelial cell that is part of a adipose tissue." [] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=7200 is_a: CL:2000008 ! microvascular endothelial cell created_by: TermGenie creation_date: 2014-10-07T22:13:45Z [Term] id: CL:2000076 name: hindlimb stylopod vein endothelial cell namespace: cell def: "Any vein endothelial cell that is part of a hindlimb stylopod." [] is_a: CL:0002543 ! vein endothelial cell created_by: TermGenie creation_date: 2014-12-02T18:40:47Z [Term] id: CL:2000091 name: endometrial microvascular endothelial cells namespace: cell def: "Any microvascular endothelial cell that is part of a endometrial blood vessel." [] is_a: CL:2000008 ! microvascular endothelial cell intersection_of: CL:2000008 ! microvascular endothelial cell intersection_of: part_of UBERON:0015172 ! endometrial blood vessel relationship: part_of UBERON:0015172 ! endometrial blood vessel created_by: TermGenie creation_date: 2015-03-31T21:02:36Z [Term] id: UBERON:0000061 name: anatomical structure namespace: uberon def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CARO:0000003] subset: upper_level synonym: "biological structure" EXACT [] synonym: "connected biological structure" EXACT [CARO:0000003] xref: AAO:0010825 xref: AEO:0000003 xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: EMAPA:0 xref: FBbt:00007001 xref: FMA:305751 xref: FMA:67135 xref: GAID:781 xref: HAO:0000003 xref: http://dbpedia.org/ontology/AnatomicalStructure xref: http://www.snomedbrowser.com/Codes/Details/362889002 xref: MA:0003000 xref: MESH:D000825 xref: TAO:0000037 xref: TGMA:0001823 xref: VHOG:0001759 xref: XAO:0003000 xref: ZFA:0000037 is_a: UBERON:0000465 ! material anatomical entity [Term] id: UBERON:0000102 name: lung vasculature namespace: uberon def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO] subset: pheno_slim synonym: "lung vascular network" EXACT [OBOL:automatic] synonym: "pulmonary vasculature" EXACT [FMA:73750] synonym: "vascular network of lung" EXACT [OBOL:automatic] synonym: "vasculature of lung" EXACT [OBOL:automatic] xref: FMA:73750 is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0000415 name: artery wall namespace: uberon def: "An anatomical wall that is part of an artery [Automatically generated definition]." [OBOL:automatic] synonym: "arterial wall" EXACT [FMA:14155] synonym: "wall of artery" EXACT [FMA:14155] xref: BTO:0002009 xref: FMA:14155 xref: galen:ArterialWall is_a: UBERON:0035965 ! wall of blood vessel relationship: part_of UBERON:0001637 ! artery [Term] id: UBERON:0000442 name: right testicular vein namespace: uberon def: "A vein that drains the left pampiniform plexus and empties into the left renal vein." [Dorlands_Medical_Dictionary:MerckSource] synonym: "right spermatic vein" EXACT [MA:0002220] synonym: "vena testicularis (adrenalis) dextra" EXACT [FMA:14341] synonym: "vena testicularis dextra" RELATED [BTO:0002679] synonym: "vena testicularis sinistra" RELATED [BTO:0002680] xref: BTO:0002679 xref: EMAPA:37383 {source="MA:th"} xref: FMA:14341 xref: http://www.snomedbrowser.com/Codes/Details/53500001 xref: MA:0002220 xref: NCIT:C52697 is_a: UBERON:0001144 ! testicular vein relationship: connected_to UBERON:0001142 ! left renal vein [Term] id: UBERON:0000443 name: left testicular vein namespace: uberon def: "A vein that drains the right pampiniform plexus and empties into the inferior vena cava." [Dorlands_Medical_Dictionary:MerckSource] synonym: "left spermatic vein" EXACT [MA:0002219] synonym: "vena testicularis dextra" RELATED [BTO:0002679] synonym: "vena testicularis sinistra" RELATED [BTO:0002680] xref: BTO:0002680 xref: EMAPA:37167 {source="MA:th"} xref: FMA:14345 xref: http://www.snomedbrowser.com/Codes/Details/90988008 xref: MA:0002219 xref: NCIT:C52696 is_a: UBERON:0001144 ! testicular vein [Term] id: UBERON:0000457 name: cavernous artery namespace: uberon def: "Any of several small branches of the internal carotid artery that supply the trigeminal ganglion and the walls of the cavernous and petrosal sinuses." [BTO:0002996] synonym: "cavernous branch of cavernous part of internal carotid artery" EXACT [FMA:70527] synonym: "ramus sinus cavernosi (pars cavernosa) (arteria carotis interna)" EXACT LATIN [FMA:70527, FMA:TA] xref: BTO:0002996 xref: FMA:70527 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery [Term] id: UBERON:0000465 name: material anatomical entity namespace: uberon def: "Anatomical entity that has mass." [http://orcid.org/0000-0001-9114-8737] subset: upper_level xref: AAO:0010264 xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 xref: FBbt:00007016 xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 xref: TGMA:0001826 xref: VHOG:0001721 is_a: BFO:0000040 ! material entity is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000467 name: anatomical system namespace: uberon def: "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." [CARO:0000011] subset: pheno_slim subset: uberon_slim subset: upper_level synonym: "anatomical systems" RELATED PLURAL [ZFA:0001439] synonym: "body system" EXACT [BIRNLEX:14] synonym: "connected anatomical system" EXACT [CARO:0000011] synonym: "organ system" EXACT [] synonym: "system" BROAD [GO:0048731] xref: AAO:0000007 xref: AEO:0000011 xref: BILA:0000011 xref: BIRNLEX:14 xref: BSA:0000049 xref: CALOHA:TS-2088 xref: CARO:0000011 xref: EHDAA2:0003011 xref: EHDAA:392 xref: EMAPA:16103 xref: EV:0100000 xref: FBbt:00004856 xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 xref: http://linkedlifedata.com/resource/umls/id/C0460002 xref: http://www.snomedbrowser.com/Codes/Details/278195005 xref: MA:0000003 xref: NCIT:C12919 xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ xref: Organ:system xref: TAO:0001439 xref: TGMA:0001831 xref: UMLS:C0460002 {source="ncithesaurus:Organ_System"} xref: VHOG:0001725 xref: WBbt:0005746 xref: WBbt:0005763 xref: XAO:0003002 xref: ZFA:0001439 is_a: UBERON:0000061 ! anatomical structure property_value: seeAlso EHDAA2:0001330 [Term] id: UBERON:0000946 name: cardial valve namespace: uberon def: "A membranous fold of the heart that prevents reflux of fluid" [http://www.ncbi.nlm.nih.gov/pubmed/7926784, MESH:A07.541.510, MP:0000285] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cardiac valve" RELATED [GO:0003170] synonym: "heart valve" EXACT [] synonym: "heart valve" RELATED [XAO:0004126] synonym: "heart valves" RELATED [] synonym: "stomodaeal valve" RELATED [] synonym: "valve of heart" EXACT [] synonym: "valvule" RELATED [] xref: BTO:0000564 xref: Cardiac:valve xref: EMAPA:17869 xref: EV:0100024 xref: FMA:7110 xref: GAID:176 xref: galen:HeartValve xref: http://linkedlifedata.com/resource/umls/id/C0018826 xref: http://www.snomedbrowser.com/Codes/Details/181285005 xref: MA:0000086 xref: MESH:D006351 xref: NCIT:C12729 xref: OpenCyc:Mx4rv8oyuJwpEbGdrcN5Y29ycA xref: TAO:0005065 xref: UMLS:C0018826 {source="ncithesaurus:Cardiac_Valve"} xref: VHOG:0000818 xref: XAO:0004126 xref: ZFA:0005065 disjoint_from: UBERON:0004754 ! foramen ovale of heart relationship: develops_from UBERON:0002062 {source="http://www.ncbi.nlm.nih.gov/pubmed/15797462"} ! endocardial cushion relationship: part_of UBERON:0000948 ! heart property_value: UBPROP:0000001 "One of the four structures within the heart that prevent backflow of blood by opening and closing with each heartbeat. The valves include two semilunar valves, the aortic and pulmonary; the mitral or bicuspid valve; and the tricuspid valve. The valves permit blood flow in only one direction. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000818", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/heart+valve"} property_value: UBPROP:0000003 "Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000818", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)"} property_value: UBPROP:0000013 "Rector et al: One might be tempted to define 'heart valve' equivalently to 'valve in the heart', and 'valve' as a 'structure which functions as a valve'. But this combination results in the 'foramen ovale' being classified as a kind of 'heart valve', since it is undoubtedly located in the heart and functions as a valve" xsd:string [Term] id: UBERON:0000947 name: aorta namespace: uberon def: "The main trunk of the systemic arterial system that carries blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation" [http://en.wikipedia.org/wiki/Aorta, http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MESH:A07.231.114.056, MP:0000272] subset: efo_slim subset: grouping_class subset: pheno_slim subset: uberon_slim synonym: "arteria maxima" RELATED LATIN [http://en.wikipedia.org/wiki/Aorta] synonym: "dorsal aorta" NARROW SENSU [http://en.wikipedia.org/wiki/Aorta#In_other_animals, ZFA:0000014] synonym: "trunk of aortic tree" EXACT [] synonym: "trunk of systemic arterial tree" EXACT [] xref: AAO:0010213 xref: BTO:0000135 xref: CALOHA:TS-0046 xref: EFO:0000265 xref: EMAPA:18601 xref: EV:0100027 xref: FMA:3734 xref: GAID:469 xref: galen:Aorta xref: http://en.wikipedia.org/wiki/Aorta xref: http://linkedlifedata.com/resource/umls/id/C0003483 xref: http://www.snomedbrowser.com/Codes/Details/181298001 xref: MA:0000062 xref: MAT:0000035 xref: MESH:D001011 xref: MIAA:0000035 xref: NCIT:C12669 xref: OpenCyc:Mx4rvVjvTpwpEbGdrcN5Y29ycA xref: UMLS:C0003483 {source="ncithesaurus:Aorta"} xref: VHOG:0001523 xref: XAO:0003010 is_a: UBERON:0003509 {source="MA"} ! arterial blood vessel is_a: UBERON:0003519 ! thoracic cavity blood vessel is_a: UBERON:0013768 ! great vessel of heart relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system property_value: depicted:by Aorta:scheme.jpg property_value: IAO:0000116 "This class is currently a mixed bag, encompassing (1) the entirety of the mammalian aorta together with (2) the developmental and phylogenetic homologs of its segments: the ventral aorta and dorsal aortae." xsd:string {source="WP"} property_value: UBPROP:0000001 "The main artery of the circulatory system which carries oxygenated blood from the heart to all the arteries of the body except those of the lungs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010213", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001523", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} property_value: UBPROP:0000007 "aortic" xsd:string property_value: UBPROP:0000008 "All amniotes have a broadly similar arrangement to that of humans, albeit with a number of individual variations. In fish, however, there are two separate vessels referred to as aortas. The ventral aorta carries de-oxygenated blood from the heart to the gills; part of this vessel forms the ascending aorta in tetrapods (the remainder forms the pulmonary artery). A second, dorsal aorta carries oxygenated blood from the gills to the rest of the body, and is homologous with the descending aorta of tetrapods. The two aortas are connected by a number of vessels, one passing through each of the gills. Amphibians also retain the fifth connecting vessel, so that the aorta has two parallel arches" xsd:string [Term] id: UBERON:0000948 name: heart namespace: uberon def: "A myogenic muscular circulatory organ found in the vertebrate cardiovascular system composed of chambers of cardiac muscle. It is the primary circulatory organ." [http://en.wikipedia.org/wiki/Heart, http://orcid.org/0000-0002-6601-2165] comment: Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepithelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" DOI:10.1101/gad.1485706 subset: efo_slim subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "branchial heart" NARROW SENSU [] synonym: "cardium" RELATED [EMAPA:16105] synonym: "chambered heart" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "Herz@de" RELATED [BTO:0000562] synonym: "vertebrate heart" EXACT [] xref: AAO:0010210 xref: BILA:0000020 xref: BTO:0000562 xref: CALOHA:TS-0445 xref: EFO:0000815 xref: EHDAA2:0000738 xref: EHDAA:420 xref: EMAPA:16105 xref: EV:0100018 xref: FMA:7088 xref: GAID:174 xref: galen:Heart xref: http://en.wikipedia.org/wiki/Heart xref: http://linkedlifedata.com/resource/umls/id/C0018787 xref: http://www.snomedbrowser.com/Codes/Details/302509004 xref: MA:0000072 xref: MAT:0000036 xref: MESH:D006321 xref: MIAA:0000036 xref: NCIT:C12727 xref: OpenCyc:Mx4rvVjvDpwpEbGdrcN5Y29ycA xref: TAO:0000114 xref: UMLS:C0018787 {source="ncithesaurus:Heart"} xref: VHOG:0000276 xref: XAO:0000064 xref: ZFA:0000114 is_a: UBERON:0007100 ! primary circulatory organ intersection_of: UBERON:0007100 ! primary circulatory organ intersection_of: has_part UBERON:0004151 ! cardiac chamber relationship: contributes_to_morphology_of UBERON:0004535 ! cardiovascular system relationship: has_part UBERON:0004151 ! cardiac chamber relationship: part_of UBERON:0015410 {source="MA"} ! heart plus pericardium property_value: UBPROP:0000001 "Blood pumping organ composed of four chambers: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000114", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Part of the circulatory system responsible for pumping blood; composed of three chambers--two atria and one ventricle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010210", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000002 "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010210", ontology="AAO"} property_value: UBPROP:0000003 "As noted, the hearts of birds and mammals have four chambers that arises from the two chambers (atrium and ventricle) of the fish heart.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000276", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.481"} property_value: UBPROP:0000007 "cardiac" xsd:string [Term] id: UBERON:0000985 name: axillary vein namespace: uberon def: "Vein that drains the axilla" [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "subcostal vein" RELATED [] synonym: "vena axillaris" EXACT LATIN [http://en.wikipedia.org/wiki/Axillary_vein] xref: Axillary:vein xref: EMAPA:18758 xref: FMA:13329 xref: GAID:527 xref: galen:AxillaryVein xref: http://linkedlifedata.com/resource/umls/id/C0004456 xref: http://www.snomedbrowser.com/Codes/Details/181389002 xref: MA:0002084 xref: MESH:D001367 xref: NCIT:C32171 xref: OpenCyc:Mx4rwLSHK5wpEbGdrcN5Y29ycA xref: UMLS:C0004456 {source="ncithesaurus:Axillary_Vein"} is_a: UBERON:0001638 ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png property_value: UBPROP:0000008 "In human anatomy, the axillary vein is a large blood vessel that conveys blood from the lateral aspect of the thorax, axilla (armpit) and upper limb toward the heart. There is one axillary vein on each side of the body. Its origin is at the lower margin of the teres major muscle and a continuation of the brachial vein. Its tributaries include the basilic vein and cephalic vein, which are both superficial veins. It terminates at the lateral margin of the first rib, at which it becomes the subclavian vein. It is accompanied along its course by a similarly named artery, the axillary artery" xsd:string {source="WP"} [Term] id: UBERON:0001009 name: circulatory system namespace: uberon def: "organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." [http://en.wikipedia.org/wiki/Circulatory_system] subset: uberon_slim synonym: "systema cardiovasculare" RELATED LATIN [http://en.wikipedia.org/wiki/Circulatory_system] xref: AAO:0000959 xref: CALOHA:TS-2103 xref: Circulatory:system xref: FBbt:00005057 xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA xref: VHOG:0001248 is_a: UBERON:0000467 ! anatomical system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg property_value: IAO:0000232 "the cardiovascular system and the lymphatic system are parts of the circulatory system" xsd:string property_value: RO:0002174 NCBITaxon:6231 {notes="WBbt coelomocyte currently classified as circulating cell"} property_value: UBPROP:0000001 "Anatomical system of ion binding, a pumping mechanism, and an efficient vascular system; consisting of the blood, heart, and blood and lymph vessels, respectively.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000959", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "We should divest ourselves of the view that earlier vertebrate groups were 'on their way' to becoming mammals, as clearly they were not such visionaries. Neither were their systems 'imperfect' as earlier anatomists thought. Instead, their circulatory systems served them well to address the ecological demands arising from their lifestyles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001248", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.493"} [Term] id: UBERON:0001011 name: hemolymph namespace: uberon def: "Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells." [http://en.wikipedia.org/wiki/Hemolymph] subset: uberon_slim synonym: "haemolymph" RELATED [] xref: BTO:0000572 xref: FBbt:00005061 xref: GAID:1220 xref: http://en.wikipedia.org/wiki/Hemolymph xref: MAT:0000054 xref: MESH:D006458 xref: MIAA:0000054 xref: TGMA:0000000 relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001062 name: anatomical entity namespace: uberon def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [FMA:62955, http://orcid.org/0000-0001-9114-8737] subset: upper_level xref: AAO:0010841 xref: AEO:0000000 xref: BILA:0000000 xref: BIRNLEX:6 xref: CARO:0000000 xref: EHDAA2:0002229 xref: FBbt:10000000 xref: FBbt_root:00000000 xref: FMA:62955 xref: HAO:0000000 xref: http://linkedlifedata.com/resource/umls/id/C1515976 xref: MA:0000001 xref: NCIT:C12219 xref: TAO:0100000 xref: TGMA:0001822 xref: UMLS:C1515976 {source="ncithesaurus:Anatomic_Structure_System_or_Substance"} xref: WBbt:0000100 xref: XAO:0000000 xref: ZFA:0100000 is_a: BFO:0000004 [Term] id: UBERON:0001070 name: external carotid artery namespace: uberon def: "A terminal branch of the left or right common carotid artery which supplies oxygenated blood to to the throat, neck glands, tongue, face, mouth, ear, scalp and dura mater of the meninges[MP]" [MGI:anna] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria carotis externa" RELATED LATIN [http://en.wikipedia.org/wiki/External_carotid_artery] synonym: "external carotid" EXACT [AAO:0010218] xref: AAO:0010218 xref: AAO:0010416 xref: BTO:0004696 xref: EFO:0001953 xref: EHDAA2:0000461 xref: EMAPA:18611 xref: FMA:10635 xref: GAID:480 xref: http://en.wikipedia.org/wiki/External_carotid_artery xref: http://linkedlifedata.com/resource/umls/id/C0007275 xref: http://www.snomedbrowser.com/Codes/Details/362044002 xref: MA:0001929 xref: MESH:D002342 xref: NCIT:C32551 xref: OpenCyc:Mx4rwVJkPZwpEbGdrcN5Y29ycA xref: UMLS:C0007275 {source="ncithesaurus:External_Carotid_Artery"} xref: VHOG:0000265 xref: XAO:0000345 is_a: UBERON:0005396 {source="MA"} ! carotid artery segment relationship: branching_part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches relationship: develops_from UBERON:0001530 {source="EHDAA2"} ! common carotid artery plus branches relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/13/External_carotid_a.gif property_value: seeAlso https://sourceforge.net/tracker/?func=detail&aid=3486863&group_id=76834&atid=1127722 xsd:anyURI property_value: UBPROP:0000008 "not homologous to the external carotid of zebrafish (Goodrich, 1958) - http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html; check XAO" xsd:string [Term] id: UBERON:0001071 name: superficial cervical artery namespace: uberon def: "It ascends beneath the anterior margin of the trapezius, distributing branches to it, and to the neighboring muscles and lymph glands in the neck, and anastomosing with the superficial branch of the descending branch of the occipital artery." [http://en.wikipedia.org/wiki/Superficial_part_of_transverse_cervical_artery] comment: The transverse cervical artery splits into two branches, a superficial one and a deep one[WP] subset: uberon_slim synonym: "superficial branch of transverse cervical artery" EXACT [http://en.wikipedia.org/wiki/Superficial_part_of_transverse_cervical_artery] xref: EMAPA:37117 {source="MA:th"} xref: FMA:10665 xref: http://en.wikipedia.org/wiki/Superficial_part_of_transverse_cervical_artery xref: http://linkedlifedata.com/resource/umls/id/C0226271 xref: http://www.snomedbrowser.com/Codes/Details/161746006 xref: MA:0002052 xref: NCIT:C53005 xref: UMLS:C0226271 {source="ncithesaurus:Superficial_Cervical_Artery"} is_a: UBERON:0012320 ! cervical artery intersection_of: UBERON:0012320 ! cervical artery intersection_of: part_of UBERON:0035549 ! vasculature of integument relationship: part_of UBERON:0035549 ! vasculature of integument [Term] id: UBERON:0001072 name: posterior vena cava namespace: uberon def: "A vein that carries deoxygenated blood from the lower half of the body into the right atrium of the heart." [http://en.wikipedia.org/wiki/Inferior_vena_cava, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "caudal vena cava" RELATED [VHOG:0001194] synonym: "inferior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "inferior vena cava" EXACT [http://en.wikipedia.org/wiki/Venae_cavae] synonym: "postcava" RELATED [] synonym: "posterior vena cava" EXACT [http://en.wikipedia.org/wiki/Venae_cavae] synonym: "vena cava inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_vena_cava] synonym: "vena cava inferior" RELATED [BTO:0002682] xref: AAO:0011083 xref: BTO:0002682 xref: EHDAA2:0000611 xref: EMAPA:18416 xref: FMA:10951 xref: GAID:548 xref: galen:InferiorVenaCava xref: http://en.wikipedia.org/wiki/Inferior_vena_cava xref: http://linkedlifedata.com/resource/umls/id/C0042458 xref: http://www.snomedbrowser.com/Codes/Details/181369003 xref: MA:0000480 xref: MESH:D014682 xref: NCIT:C12815 xref: UMLS:C0042458 {source="ncithesaurus:Inferior_Vena_Cava"} xref: VHOG:0001194 xref: XAO:0000388 is_a: UBERON:0004087 ! vena cava disjoint_from: UBERON:0001585 {source="lexical"} ! anterior vena cava property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png property_value: UBPROP:0000001 "Trunk of systemic vein which is formed by the union of the right common iliac vein and the left common iliac vein and terminates in the right atrium[FMA]." xsd:string {source="FMA:10951"} property_value: UBPROP:0000003 "Phylogenetic modifications within this basic pattern of arteries and veins are largely correlated with functional changes. In the transition from water to land, gills gave way to lungs, accompanied by the establishment of a pulmonary circulation. In some fishes and certainly in tetrapods, the cardinal veins become less involved in blood return. Instead, the composite, prominent postcava (posterior vena cava) arose to drain the posterior part of the body and the precava (anterior vena cava) developed to drain the anterior part of the body.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001194", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.454-455"} [Term] id: UBERON:0001074 name: pericardial cavity namespace: uberon def: "A potential space between the visceral and parietal layers of the pericardium." [http://en.wikipedia.org/wiki/Pericardium] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cavitas pericardiaca" RELATED LATIN [http://en.wikipedia.org/wiki/Pericardial_cavity] synonym: "cavity of pericardial sac" EXACT [] synonym: "pericardial space" EXACT [http://en.wikipedia.org/wiki/Pericardial_cavity] xref: BSA:0000091 xref: EHDAA2:0001434 xref: EMAPA:16131 xref: EMAPA:16132 xref: FMA:11350 xref: galen:PericardialSpace xref: http://linkedlifedata.com/resource/umls/id/C0225972 xref: http://www.snomedbrowser.com/Codes/Details/362027001 xref: MA:0000053 xref: NCIT:C38662 xref: Pericardial:cavity xref: TAO:0002220 xref: UMLS:C0225972 {source="ncithesaurus:Pericardial_Cavity"} xref: VHOG:0000556 xref: ZFA:0001655 relationship: luminal_space_of UBERON:0002406 ! pericardial sac relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac relationship: surrounded_by UBERON:0002357 ! serous pericardium property_value: RO:0002175 NCBITaxon:7718 {source="http://www.ncbi.nlm.nih.gov/pubmed/20959416"} property_value: UBPROP:0000001 "Anatomical space in which the heart is located and is surrounded by the pericardium.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002220", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart (of other tetrapods) is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes). Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000556", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.205-206"} property_value: UBPROP:0000012 "check ZFA, should actually be thoracic cavity. Note that Hyman defines the cavity as the space between the heart and the sac (but defines the sac as parietal)" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0001081 name: endocardium of ventricle namespace: uberon def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator] subset: pheno_slim subset: vertebrate_core synonym: "cardiac ventricle endocardium" EXACT [OBOL:automatic] synonym: "endocardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "endocardium of heart ventricle" EXACT [OBOL:automatic] synonym: "endocardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "endocardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart ventricle endocardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart endocardium" EXACT [OBOL:automatic] synonym: "ventricle endocardial tissue" RELATED [VHOG:0000607] synonym: "ventricle endocardium" EXACT [] synonym: "ventricle of heart endocardium" EXACT [OBOL:automatic] synonym: "ventricular endocardium" EXACT [] xref: EMAPA:32747 xref: FMA:12148 xref: http://www.snomedbrowser.com/Codes/Details/192172004 xref: MA:0000079 xref: TAO:0002247 xref: VHOG:0000607 xref: ZFA:0001615 is_a: UBERON:0002165 ! endocardium intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: contributes_to_morphology_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0004784 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! heart ventricle wall [Term] id: UBERON:0001082 name: epicardium of ventricle namespace: uberon def: "An epicardial layer that lines a cardiac ventricle" [http://orcid.org/0000-0002-6601-2165] subset: vertebrate_core synonym: "cardiac ventricle epicardium" EXACT [OBOL:automatic] synonym: "ventricular epicardium" EXACT [] xref: FMA:12150 xref: TAO:0005058 xref: ZFA:0005058 is_a: UBERON:0002348 ! epicardium intersection_of: UBERON:0002348 ! epicardium intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002082 ! cardiac ventricle property_value: UBPROP:0000001 "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005058", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001083 name: myocardium of ventricle namespace: uberon def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [ZFIN:curator] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "ventricle cardiac muscle" RELATED [VHOG:0000604] synonym: "ventricle myocardium" EXACT [] synonym: "ventricular myocardium" EXACT [] xref: EFO:0003088 xref: EMAPA:32748 xref: FMA:12151 xref: http://www.snomedbrowser.com/Codes/Details/192084000 xref: MA:0000082 xref: TAO:0005061 xref: VHOG:0000604 xref: ZFA:0005061 is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: contributes_to_morphology_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0004784 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! heart ventricle wall property_value: UBPROP:0000001 "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer Hu et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005061", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "As noted, the hearts of birds and mammals have four chambers that arises from the two chambers (atrium and ventricle) of the fish heart.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000604", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.481"} [Term] id: UBERON:0001099 name: subcostal vein namespace: uberon def: "A vein that runs along the bottom of the lowest rib. Each subcostal vein gives off a posterior (dorsal) branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,modified]." [http://en.wikipedia.org/wiki/Subcostal_vein] subset: uberon_slim synonym: "vena subcostalis" RELATED LATIN [http://en.wikipedia.org/wiki/Subcostal_vein] xref: EMAPA:37189 {source="MA:th"} xref: FMA:12845 xref: http://linkedlifedata.com/resource/umls/id/C0226653 xref: http://www.snomedbrowser.com/Codes/Details/25248001 xref: MA:0002222 xref: NCIT:C53121 xref: Subcostal:vein xref: UMLS:C0226653 {source="ncithesaurus:Subcostal_Vein"} is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001101 name: external jugular vein namespace: uberon def: "The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/External_jugular_vein] subset: uberon_slim synonym: "external jugular" RELATED [EHDAA2:0000468] synonym: "external jugular venous tree" EXACT [] synonym: "vena jugularis externa" RELATED LATIN [http://en.wikipedia.org/wiki/External_jugular_vein] xref: AAO:0010508 xref: EHDAA2:0000468 xref: EHDAA:9887 xref: EMAPA:17875 xref: FMA:13110 xref: galen:ExternalJugularVein xref: http://en.wikipedia.org/wiki/External_jugular_vein xref: http://linkedlifedata.com/resource/umls/id/C0226543 xref: http://www.snomedbrowser.com/Codes/Details/181373000 xref: MA:0002156 xref: NCIT:C32562 xref: OpenCyc:Mx4rvrm0c5wpEbGdrcN5Y29ycA xref: UMLS:C0226543 {source="ncithesaurus:External_Jugular_Vein"} xref: XAO:0000379 is_a: UBERON:0004711 ! jugular vein relationship: part_of UBERON:0001587 ! subclavian vein relationship: tributary_of UBERON:0001587 {source="FMA"} ! subclavian vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png property_value: UBPROP:0000001 "Vein which collects blood from the muscles of the head and tongue and the thyroid gland.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010508", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001104 name: anterior jugular vein namespace: uberon def: "The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Anterior_jugular_vein] subset: uberon_slim synonym: "anterior external jugular vein" EXACT [] synonym: "vena jugularis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_jugular_vein] xref: EMAPA:37134 {source="MA:th"} xref: FMA:13318 xref: http://en.wikipedia.org/wiki/Anterior_jugular_vein xref: http://linkedlifedata.com/resource/umls/id/C0226545 xref: http://www.snomedbrowser.com/Codes/Details/65478008 xref: MA:0002155 xref: NCIT:C32094 xref: UMLS:C0226545 {source="ncithesaurus:Anterior_Jugular_Vein"} is_a: UBERON:0004711 ! jugular vein disjoint_from: UBERON:0035249 {source="lexical"} ! posterior external jugular vein relationship: part_of UBERON:0001101 ! external jugular vein relationship: tributary_of UBERON:0001101 {source="Wikipedia"} ! external jugular vein relationship: tributary_of UBERON:0001587 {source="FMA", source="Wikipedia"} ! subclavian vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png [Term] id: UBERON:0001106 name: cephalic vein namespace: uberon def: "A superficial vein of the upper limb that communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,modified]." [http://en.wikipedia.org/wiki/Cephalic_vein] subset: uberon_slim synonym: "cephalic vein of forearm" EXACT [] synonym: "vena cephalica" RELATED LATIN [http://en.wikipedia.org/wiki/Cephalic_vein] synonym: "vena cephalica antebrachii" EXACT LATIN [FMA:13324, FMA:TA] xref: Cephalic:vein xref: EMAPA:25075 xref: FMA:13324 xref: galen:CephalicVein xref: http://linkedlifedata.com/resource/umls/id/C0226802 xref: http://www.snomedbrowser.com/Codes/Details/181391005 xref: MA:0002092 xref: NCIT:C32286 xref: OpenCyc:Mx4rwTpbQZwpEbGdrcN5Y29ycA xref: UMLS:C0226802 {source="ncithesaurus:Cephalic_Vein"} is_a: UBERON:0003507 ! arm blood vessel is_a: UBERON:0035550 ! superficial vein relationship: part_of UBERON:0000985 ! axillary vein relationship: part_of UBERON:0001587 ! subclavian vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png [Term] id: UBERON:0001133 name: cardiac muscle tissue namespace: uberon alt_id: UBERON:0007096 def: "Muscle tissue composed of cardiac muscle cells, forming the muscles of the heart[ZFA,modified]." [ZFA:0005280] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cardiac muscle" EXACT [] synonym: "cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac musculature" RELATED [BILA:0000134] synonym: "heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium" EXACT [OBOL:automatic] xref: AAO:0010245 xref: AEO:0000142 xref: BILA:0000134 xref: BTO:0000199 xref: CALOHA:TS-0440 xref: Cardiac:muscle xref: EHDAA2:0003142 xref: EMAPA:32688 xref: FMA:14068 xref: galen:CardiacMuscle xref: galen:CardiacMuscleTissue xref: ncithesaurus:Heart_Muscle xref: TAO:0005280 xref: ZFA:0005280 relationship: composed_primarily_of CL:0000746 ! cardiac muscle cell relationship: has_part CL:0000746 ! cardiac muscle cell relationship: part_of UBERON:0000948 {source="ZFA"} ! heart property_value: IAO:0000116 "check relationship with myocardium. part_of in MA - but we also have a more specific class 'cardiac muscle tissue of myocardium'. Check ncit" xsd:string [Term] id: UBERON:0001138 name: superior mesenteric vein namespace: uberon def: "In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_mesenteric_vein] subset: uberon_slim synonym: "upper mesenteric vein" RELATED [BTO:0002783] synonym: "vena mesenterica superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_mesenteric_vein] xref: BTO:0002783 xref: EHDAA2:0001951 xref: EHDAA:5414 xref: EMAPA:18643 xref: FMA:14332 xref: http://en.wikipedia.org/wiki/Superior_mesenteric_vein xref: http://linkedlifedata.com/resource/umls/id/C0226742 xref: http://www.snomedbrowser.com/Codes/Details/278031001 xref: MA:0002179 xref: NCIT:C33687 xref: OpenCyc:Mx4rwFjmM5wpEbGdrcN5Y29ycA xref: UMLS:C0226742 {source="ncithesaurus:Superior_Mesenteric_Vein"} xref: VHOG:0000552 is_a: UBERON:0005617 ! mesenteric vein relationship: develops_from UBERON:0005487 {source="Vitelline:vein"} ! vitelline vein relationship: part_of UBERON:0005806 ! portal system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png [Term] id: UBERON:0001139 name: common iliac vein namespace: uberon def: "A vein that drains the pelvis and lower limbs into the inferior vena cava." [http://en.wikipedia.org/wiki/Common_iliac_vein, MURDOCH:403] subset: uberon_slim synonym: "common iliac venous tree" EXACT [] synonym: "vena iliaca communis" RELATED LATIN [http://en.wikipedia.org/wiki/Common_iliac_vein] xref: EMAPA:17874 xref: FMA:14333 xref: galen:CommonIliacVein xref: http://en.wikipedia.org/wiki/Common_iliac_vein xref: http://linkedlifedata.com/resource/umls/id/C0226758 xref: http://www.snomedbrowser.com/Codes/Details/181398004 xref: MA:0002143 xref: NCIT:C32359 xref: OpenCyc:Mx4rv92CGZwpEbGdrcN5Y29ycA xref: UMLS:C0226758 {source="ncithesaurus:Common_Iliac_Vein"} is_a: UBERON:0005610 {source="MA"} ! iliac vein relationship: in_lateral_side_of UBERON:0001072 {source="FMA-abduced-lr"} ! posterior vena cava relationship: part_of UBERON:0001072 ! posterior vena cava property_value: depicted:by Iliac:veins.gif property_value: UBPROP:0000008 "In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries." xsd:string {source="http://en.wikipedia.org/wiki/Common_iliac_vein"} [Term] id: UBERON:0001140 name: renal vein namespace: uberon def: "Either of the pair of major vessels which arise from the renal hilus and return blood from the kidneys, suprarenal gland and the ureter to the inferior vena cava." [ISBN:0-683-40008-8, MGI:csmith, MP:0011323] subset: pheno_slim subset: uberon_slim synonym: "kidney vein" EXACT [OBOL:automatic] synonym: "renal venous tree" EXACT [] synonym: "vein of kidney" EXACT [OBOL:automatic] synonym: "venae renales" RELATED LATIN [http://en.wikipedia.org/wiki/Renal_vein] xref: BTO:0002681 xref: EHDAA2:0001602 xref: EHDAA:8722 xref: EMAPA:28376 xref: FMA:14334 xref: GAID:544 xref: galen:RenalVein xref: http://linkedlifedata.com/resource/umls/id/C0035092 xref: http://www.snomedbrowser.com/Codes/Details/116358006 xref: MA:0002210 xref: MESH:D012082 xref: NCIT:C33462 xref: OpenCyc:Mx4rvdUXKJwpEbGdrcN5Y29ycA xref: Renal:vein xref: UMLS:C0035092 {source="ncithesaurus:Renal_Vein"} is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001072 ! posterior vena cava relationship: tributary_of UBERON:0001072 ! posterior vena cava property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png property_value: UBPROP:0000001 "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted][Wikipedia:Renal_vein]." xsd:string {source="Renal:vein"} property_value: UBPROP:0000012 "in EHDAA2, the renal vein is part of the kidney" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0001141 name: right renal vein namespace: uberon def: "A renal vein that drains the right kidney" [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim xref: EMAPA:37381 {source="MA:th"} xref: FMA:14335 xref: http://linkedlifedata.com/resource/umls/id/C0508000 xref: http://www.snomedbrowser.com/Codes/Details/116357001 xref: MA:0002212 xref: NCIT:C52695 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA xref: UMLS:C0508000 {source="ncithesaurus:Right_Renal_Vein"} is_a: UBERON:0001140 ! renal vein property_value: UBPROP:0000001 "A vein that drains blood from the right kidney into the inferior vena cava[ncithesaurus]." xsd:string {source="ncithesaurus:Right_Renal_Vein"} [Term] id: UBERON:0001142 name: left renal vein namespace: uberon def: "A renal vein that drains the left kidney" [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim xref: EMAPA:37166 {source="MA:th"} xref: FMA:14336 xref: http://linkedlifedata.com/resource/umls/id/C0508001 xref: http://www.snomedbrowser.com/Codes/Details/116356005 xref: MA:0002211 xref: NCIT:C52693 xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA xref: UMLS:C0508001 {source="ncithesaurus:Left_Renal_Vein"} is_a: UBERON:0001140 ! renal vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png property_value: UBPROP:0000001 "A vein that drains blood from the left kidney into the inferior vena cava[ncithesaurus]." xsd:string {source="ncithesaurus:Left_Renal_Vein"} [Term] id: UBERON:0001143 name: hepatic vein namespace: uberon def: "Vein that carries blood away from the liver[ZFA]." [http://en.wikipedia.org/wiki/Hepatic_vein, https://sourceforge.net/tracker/?func=detail&aid=3565355&group_id=76834&atid=1205376, ZFA:0000670] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "hepatic veins" RELATED PLURAL [] synonym: "liver vein" EXACT [OBOL:automatic] synonym: "vein of liver" EXACT [OBOL:automatic] synonym: "vena hepatica" EXACT LATIN [] synonym: "venae hepaticae" RELATED LATIN [http://en.wikipedia.org/wiki/Hepatic_vein] xref: AAO:0010216 xref: EMAPA:19221 xref: FMA:14337 xref: GAID:534 xref: galen:HepaticVein xref: Hepatic:vein xref: http://linkedlifedata.com/resource/umls/id/C0019155 xref: http://www.snomedbrowser.com/Codes/Details/278191001 xref: MA:0003015 xref: MESH:D006503 xref: NCIT:C32736 xref: OpenCyc:Mx4rv5GivJwpEbGdrcN5Y29ycA xref: TAO:0000670 xref: UMLS:C0019155 {source="ncithesaurus:Hepatic_Vein"} xref: XAO:0000387 xref: ZFA:0000670 is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0015796 ! liver blood vessel disjoint_from: UBERON:0001639 ! hepatic portal vein relationship: part_of UBERON:0001072 ! posterior vena cava relationship: part_of UBERON:0006877 ! vasculature of liver relationship: tributary_of UBERON:0001072 {source="FMA-abduced-lr"} ! posterior vena cava property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png property_value: IAO:0000116 "todo - add developmental relationships for other taxa" xsd:string [Term] id: UBERON:0001144 name: testicular vein namespace: uberon def: "A vein that carries deoxygenated blood from a single male gonad. It is the male equivalent of the ovarian vein, and is the venous counterpart of the testicular artery. It is a paired vein, with one supplying each testis." [http://en.wikipedia.org/wiki/Testicular_vein, http://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/?func=detail&aid=3220553&group_id=76834&atid=1205376] subset: uberon_slim synonym: "male gonadal vein" EXACT [http://en.wikipedia.org/wiki/Testicular_vein] synonym: "spermatic vein" EXACT [http://en.wikipedia.org/wiki/Testicular_vein] synonym: "testicle vein" EXACT [OBOL:automatic] synonym: "testicular venous tree" EXACT [http://en.wikipedia.org/wiki/Testicular_vein] synonym: "vein of testicle" EXACT [OBOL:automatic] synonym: "vena tesicularis" RELATED [BTO:0002678] synonym: "vena testicularis dextra" RELATED LATIN [http://en.wikipedia.org/wiki/Testicular_vein] synonym: "vena testicularis sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Testicular_vein] synonym: "venae spermaticae" RELATED LATIN [http://en.wikipedia.org/wiki/Testicular_vein] xref: BTO:0002678 xref: EMAPA:18647 xref: FMA:14344 xref: http://linkedlifedata.com/resource/umls/id/C0226718 xref: http://www.snomedbrowser.com/Codes/Details/264496006 xref: MA:0002218 xref: MA:0002234 xref: NCIT:C53050 xref: OpenCyc:Mx4rv1WIHpwpEbGdrcN5Y29ycA xref: Testicular:vein xref: UMLS:C0226718 {source="ncithesaurus:Spermatic_Vein"} is_a: UBERON:0001638 ! vein relationship: connected_to UBERON:0001072 ! posterior vena cava relationship: connected_to UBERON:0001330 ! pampiniform plexus relationship: sexually_homologous_to UBERON:0001145 ! ovarian vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray590.png property_value: IAO:0000116 "TODO - check testicular vs spermatic vein (MA:0002218)" xsd:string property_value: UBPROP:0000008 "In humans, the right testicular vein generally joins the inferior vena cava; the left testicular vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. The veins emerge from the back of the testis, and receive tributaries from the epididymis; they unite and form a convoluted plexus, called the pampiniform plexus, which constitutes the greater mass of the spermatic cord; the vessels composing this plexus are very numerous, and ascend along the cord, in front of the ductus deferens. Below the subcutaneous inguinal ring, they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins, which ascend on the Psoas major, behind the peritoneum, lying one on either side of the internal spermatic artery. These unite to form a single vein, which opens, on the right side, into the inferior vena cava (at an acute angle), on the left side into the left renal vein (at a right angle). The spermatic veins are provided with valves. The left spermatic vein passes behind the iliac colon and is thus exposed to pressure from the contents of that part of the bowel" xsd:string [Term] id: UBERON:0001145 name: ovarian vein namespace: uberon def: "A vein that carries deoxygenated blood from its corresponding ovary to inferior vena cava or one of its tributaries." [http://en.wikipedia.org/wiki/Ovarian_vein] subset: uberon_slim synonym: "female reproductive system gonad vein" EXACT [OBOL:automatic] synonym: "female reproductive system gonada vein" EXACT [OBOL:automatic] synonym: "gonad of female reproductive system vein" EXACT [OBOL:automatic] synonym: "gonada of female reproductive system vein" EXACT [OBOL:automatic] synonym: "ovary vein" EXACT [OBOL:automatic] synonym: "vein of female reproductive system gonad" EXACT [OBOL:automatic] synonym: "vein of female reproductive system gonada" EXACT [OBOL:automatic] synonym: "vein of gonad of female reproductive system" EXACT [OBOL:automatic] synonym: "vein of gonada of female reproductive system" EXACT [OBOL:automatic] synonym: "vein of ovary" EXACT [OBOL:automatic] synonym: "vena ovarica dextra" RELATED LATIN [http://en.wikipedia.org/wiki/Ovarian_vein] synonym: "vena ovarica sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Ovarian_vein] xref: EMAPA:18644 xref: FMA:14346 xref: http://linkedlifedata.com/resource/umls/id/C0226720 xref: http://www.snomedbrowser.com/Codes/Details/278193003 xref: MA:0002186 xref: NCIT:C53058 xref: OpenCyc:Mx4rvrST5ZwpEbGdrcN5Y29ycA xref: Ovarian:vein xref: UMLS:C0226720 {source="ncithesaurus:Ovarian_Vein"} is_a: UBERON:0001638 ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cf/Ovarschaf.jpg [Term] id: UBERON:0001146 name: suprarenal vein namespace: uberon def: "A vein that drains the adrenal gland." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/mouse-anatomy-ontology/issues/110] subset: uberon_slim synonym: "adrenal vein" RELATED [MA:0002081] xref: EHDAA2:0001966 xref: EHDAA:8731 xref: FMA:14348 xref: http://linkedlifedata.com/resource/umls/id/C0226717 xref: http://www.snomedbrowser.com/Codes/Details/278194009 xref: MA:0002081 xref: MA:0002229 xref: NCIT:C53129 xref: Suprarenal:vein xref: UMLS:C0226717 {source="ncithesaurus:Suprarenal_Vein"} is_a: UBERON:0001638 ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png [Term] id: UBERON:0001182 name: superior mesenteric artery namespace: uberon def: "Mesenteric artery that supplies the whole length of the small intestine except the superior part of the duodenum. It also supplies the cecum and the ascending part of the colon and about half the transverse part of the colon. It arises from the anterior surface of the aorta below the celiac artery at the level of the first lumbar vertebra." [MESH:A07.231.114.565.755] subset: pheno_slim subset: uberon_slim synonym: "arteria mesenterica superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_mesenteric_artery] synonym: "arteria mesenterica superior" RELATED [BTO:0002303] synonym: "superior mesenteric arterial tree" EXACT [] xref: BTO:0002303 xref: EHDAA2:0001949 xref: EHDAA:3358 xref: EHDAA:5313 xref: EMAPA:18619 xref: FMA:14749 xref: GAID:502 xref: galen:SuperiorMesentericArtery xref: http://en.wikipedia.org/wiki/Superior_mesenteric_artery xref: http://linkedlifedata.com/resource/umls/id/C0162861 xref: http://www.snomedbrowser.com/Codes/Details/362048004 xref: MA:0002005 xref: MESH:D017538 xref: NCIT:C33685 xref: OpenCyc:Mx4rwE5KipwpEbGdrcN5Y29ycA xref: UMLS:C0162861 {source="ncithesaurus:Superior_Mesenteric_Artery"} xref: VHOG:0000754 is_a: UBERON:0005616 ! mesenteric artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/68/Gray1099.png property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif property_value: UBPROP:0000010 "Origin: abdominal aorta; branches, inferior pancreaticoduodenal, jejunal, ileal, ileocolic, right colic, and middle colic arteries; distribution: small intestine, proximal half of colon" xsd:string {source="BTO"} [Term] id: UBERON:0001183 name: inferior mesenteric artery namespace: uberon def: "Mesenteric artery that supplies the large intestine from the left colic (or splenic) flexure to the upper part of the rectum, which includes the descending colon, the sigmoid colon, and part of the rectum. Proximally, its territory of distribution overlaps (forms a watershed) with the middle colic artery, and therefore the superior mesenteric artery. The SMA and IMA anastomose via the marginal artery (artery of Drummond). The territory of distribution of the IMA is more or less equivalent to the embryonic hindgut. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_mesenteric_artery] subset: pheno_slim subset: uberon_slim synonym: "arteria mesenterica inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_mesenteric_artery] synonym: "arteria mesenterica inferior" RELATED [BTO:0002302] synonym: "IMA" BROAD ABBREVIATION [] synonym: "inferior mesenteric arterial tree" EXACT [] xref: BTO:0002302 xref: EHDAA2:0000817 xref: EHDAA:4345 xref: EMAPA:18618 xref: FMA:14750 xref: GAID:501 xref: galen:InferiorMesentericArtery xref: http://en.wikipedia.org/wiki/Inferior_mesenteric_artery xref: http://linkedlifedata.com/resource/umls/id/C0162860 xref: http://www.snomedbrowser.com/Codes/Details/181341006 xref: MA:0002004 xref: MESH:D017537 xref: NCIT:C32780 xref: OpenCyc:Mx4rv-t-S5wpEbGdrcN5Y29ycA xref: UMLS:C0162860 {source="ncithesaurus:Inferior_Mesenteric_Artery"} xref: VHOG:0001116 is_a: UBERON:0005616 ! mesenteric artery is_a: UBERON:0035039 ! rectal artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png [Term] id: UBERON:0001184 name: renal artery namespace: uberon def: "One of two laterally paired arteries that supplies the kidneys. These are large arteries that branch from the dorsal aorta in primitive vertebrates." [http://en.wikipedia.org/wiki/Renal_artery, ISBN:0073040584] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria renalis" RELATED LATIN [http://en.wikipedia.org/wiki/Renal_artery] synonym: "renal arterial tree" EXACT [] synonym: "renal arteries" RELATED PLURAL [] xref: AAO:0010223 xref: BTO:0001165 xref: EFO:0002552 xref: EHDAA2:0004100 xref: EHDAA:5321 xref: EHDAA:8594 xref: EMAPA:28373 xref: FMA:14751 xref: GAID:507 xref: galen:RenalArtery xref: http://linkedlifedata.com/resource/umls/id/C0035065 xref: http://www.snomedbrowser.com/Codes/Details/181339005 xref: MA:0002035 xref: MESH:D012077 xref: NCIT:C12778 xref: OpenCyc:Mx4rveOFHpwpEbGdrcN5Y29ycA xref: Renal:artery xref: RETIRED_EHDAA2:0001600 xref: TAO:0000420 xref: UMLS:C0035065 {source="ncithesaurus:Renal_Artery"} xref: ZFA:0000420 is_a: UBERON:0012254 ! abdominal aorta artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png property_value: IAO:0000116 "renal arteries vary widely even in humans. Sub-structures should be checked for taxon variability." xsd:string property_value: UBPROP:0000001 "Artery which supplies blood via branches to the gonads, oviducts, and kidneys.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010223", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 ± 0.74 mm using ultrasound, but 5.68 ± 1.19 mm using angiography. [WP,unvetted].[Wikipedia]" xsd:string {ontology="Wikipedia", source="Renal:artery"} [Term] id: UBERON:0001185 name: right renal artery namespace: uberon def: "Renal artery that supplies the right kidney" [https://orcid.org/0000-0002-6601-2165] comment: The right [renal artery] passes behind the inferior vena cava, the right renal vein, the head of the pancreas, and the descending part of the duodenum[WP] subset: pheno_slim subset: uberon_slim synonym: "right renal arterial tree" EXACT [] xref: EMAPA:37380 {source="MA:th"} xref: FMA:14752 xref: http://linkedlifedata.com/resource/umls/id/C0226332 xref: http://www.snomedbrowser.com/Codes/Details/36800007 xref: MA:0002037 xref: NCIT:C52740 xref: OpenCyc:Mx4rtW8I0KgEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA xref: UMLS:C0226332 {source="ncithesaurus:Right_Renal_Artery"} is_a: UBERON:0001184 ! renal artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png [Term] id: UBERON:0001186 name: left renal artery namespace: uberon def: "Renal artery that supplies the left kidney" [https://orcid.org/0000-0002-6601-2165] comment: The left [renal artery] is somewhat higher than the right; it lies behind the left renal vein, the body of the pancreas and the splenic vein, and is crossed by the inferior mesenteric vein[WP] subset: pheno_slim synonym: "left renal arterial tree" EXACT [] xref: EMAPA:37098 {source="MA:th"} xref: FMA:14753 xref: http://linkedlifedata.com/resource/umls/id/C0226333 xref: http://www.snomedbrowser.com/Codes/Details/19215005 xref: MA:0002036 xref: NCIT:C52741 xref: OpenCyc:Mx4rtW8I0agEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA xref: UMLS:C0226333 {source="ncithesaurus:Left_Renal_Artery"} is_a: UBERON:0001184 ! renal artery [Term] id: UBERON:0001187 name: testicular artery namespace: uberon def: "One of a pair of arteries that is a branch of the abdominal aorta that supplies blood to a male gonad." [http://en.wikipedia.org/wiki/Testicular_artery, http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria testicularis" RELATED LATIN [http://en.wikipedia.org/wiki/Testicular_artery] synonym: "internal spermatic" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] synonym: "internal spermatic arteries" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] synonym: "internal spermatic artery" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] synonym: "internal spermatic vessels" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] synonym: "spermatic arteries" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] synonym: "spermatic artery" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] synonym: "spermatic vessels" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] synonym: "testicular arterial tree" EXACT [] synonym: "testicular arteries" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] xref: EMAPA:18621 xref: FMA:14758 xref: http://www.snomedbrowser.com/Codes/Details/244281003 xref: MA:0002063 xref: Testicular:artery is_a: UBERON:0010192 ! genital artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png [Term] id: UBERON:0001188 name: right testicular artery namespace: uberon def: "A testicular artery that supplies a right testicle." [OBOL:automatic] synonym: "right spermatic artery" EXACT [] synonym: "trunk of right testicular arterial tree" EXACT [] xref: EMAPA:37382 {source="MA:th"} xref: FMA:14759 xref: http://linkedlifedata.com/resource/umls/id/C0734076 xref: MA:0002042 xref: NCIT:C52738 xref: UMLS:C0734076 {source="ncithesaurus:Right_Spermatic_Artery"} is_a: UBERON:0001187 ! testicular artery is_a: UBERON:0003468 ! ureteric segment of renal artery [Term] id: UBERON:0001189 name: left testicular artery namespace: uberon def: "A testicular artery that supplies a left testicle." [OBOL:automatic] synonym: "left spermatic artery" EXACT [] synonym: "trunk of left testicular arterial tree" EXACT [] xref: EMAPA:37099 {source="MA:th"} xref: FMA:14760 xref: http://linkedlifedata.com/resource/umls/id/C0734077 xref: MA:0002041 xref: NCIT:C52739 xref: UMLS:C0734077 {source="ncithesaurus:Left_Spermatic_Artery"} is_a: UBERON:0001187 ! testicular artery is_a: UBERON:0003468 ! ureteric segment of renal artery [Term] id: UBERON:0001190 name: ovarian artery namespace: uberon def: "An artery that supplies an ovary." [OBOL:automatic] subset: uberon_slim synonym: "arteria ovarica" RELATED LATIN [http://en.wikipedia.org/wiki/Ovarian_artery] synonym: "ovarian arterial tree" EXACT [] xref: EMAPA:18620 xref: FMA:14761 xref: http://linkedlifedata.com/resource/umls/id/C0226411 xref: http://www.snomedbrowser.com/Codes/Details/244280002 xref: MA:0002012 xref: NCIT:C33242 xref: OpenCyc:Mx4rwOa9PZwpEbGdrcN5Y29ycA xref: Ovarian:artery xref: UMLS:C0226411 {source="ncithesaurus:Ovarian_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png property_value: UBPROP:0000001 "In human anatomy, the ovarian artery is a blood vessel that supplies oxygenated blood to the ovary. It arises from the abdominal aorta below the renal artery, and does not pass out of the abdomiproperty_value external_definitioncavity. It can be found in the suspensory ligament of the ovary. [WP]." xsd:string {source="Ovarian:artery"} [Term] id: UBERON:0001191 name: common iliac artery namespace: uberon def: "The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]." [http://en.wikipedia.org/wiki/Common_iliac_artery] comment: See notes for parent class subset: uberon_slim synonym: "arteria iliaca communis" RELATED LATIN [http://en.wikipedia.org/wiki/Common_iliac_artery] synonym: "common iliac arterial tree" EXACT [] xref: EHDAA2:0000311 xref: EHDAA:2553 xref: EMAPA:17310 xref: FMA:14764 xref: http://en.wikipedia.org/wiki/Common_iliac_artery xref: http://linkedlifedata.com/resource/umls/id/C1261084 xref: http://www.snomedbrowser.com/Codes/Details/362050007 xref: MA:0001972 xref: NCIT:C32357 xref: OpenCyc:Mx4rvkZ7ZpwpEbGdrcN5Y29ycA xref: UMLS:C1261084 {source="ncithesaurus:Common_Iliac_Artery"} is_a: UBERON:0005609 {source="MA"} ! iliac artery is_a: UBERON:0012254 ! abdominal aorta artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6e/Iliac_artery_bifurcation_and_aorta.PNG [Term] id: UBERON:0001192 name: left gastric artery namespace: uberon def: "An artery that arises from the celiac artery and supplies the stomach." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria gastrica sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Left_gastric_artery] synonym: "gastric artery" RELATED [FMA:14768] xref: EMAPA:35374 xref: FMA:14768 xref: galen:LeftGastricArtery xref: http://en.wikipedia.org/wiki/Left_gastric_artery xref: http://linkedlifedata.com/resource/umls/id/C0226299 xref: http://www.snomedbrowser.com/Codes/Details/244267000 xref: MA:0001961 xref: NCIT:C32654 xref: OpenCyc:Mx4rwMjqKZwpEbGdrcN5Y29ycA xref: UMLS:C0226299 {source="ncithesaurus:Gastric_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001640 ! celiac artery relationship: part_of UBERON:0001640 ! celiac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png [Term] id: UBERON:0001193 name: hepatic artery namespace: uberon def: "An artery that supplies the liver." [http://en.wikipedia.org/wiki/Hepatic_artery_proper, https://orcid.org/0000-0002-6601-2165] subset: uberon_slim subset: vertebrate_core synonym: "arteria hepatica" RELATED [BTO:0004307] synonym: "arteria hepatica propria" EXACT LATIN [] xref: BTO:0004307 xref: EMAPA:17859 xref: FMA:14769 xref: GAID:496 xref: galen:HepaticArtery xref: http://linkedlifedata.com/resource/umls/id/C0019145 xref: http://www.snomedbrowser.com/Codes/Details/76015000 xref: MA:0001963 xref: MESH:D006499 xref: NCIT:C32729 xref: OpenCyc:Mx4rvzKtFpwpEbGdrcN5Y29ycA xref: TAO:0005161 xref: UMLS:C0019145 {source="ncithesaurus:Hepatic_Artery"} xref: ZFA:0005161 is_a: UBERON:0001637 ! artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4c/Common_and_proper_hepatic_artery.png property_value: IAO:0000232 "currently defined in a generic fashion." xsd:string property_value: UBPROP:0000001 "Artery that supplies blood to the liver.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005161", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001194 name: splenic artery namespace: uberon def: "An artery that supplies the spleen." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria lienalis" RELATED LATIN [http://en.wikipedia.org/wiki/Splenic_artery] synonym: "arteria splenica" EXACT LATIN [http://en.wikipedia.org/wiki/Splenic_artery] synonym: "lienal artery" EXACT [MA:0001991] xref: EMAPA:19216 xref: FMA:14773 xref: GAID:510 xref: galen:SplenicArtery xref: http://linkedlifedata.com/resource/umls/id/C0037996 xref: http://www.snomedbrowser.com/Codes/Details/244266009 xref: MA:0001991 xref: MA:0003177 xref: MESH:D013157 xref: NCIT:C33597 xref: OpenCyc:Mx4rv0cb2ZwpEbGdrcN5Y29ycA xref: Splenic:artery xref: UMLS:C0037996 {source="ncithesaurus:Splenic_Artery"} is_a: UBERON:0004573 ! systemic artery disjoint_from: UBERON:0001640 ! celiac artery relationship: branching_part_of UBERON:0001640 ! celiac artery relationship: part_of UBERON:0001640 ! celiac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png property_value: seeAlso https://github.com/obophenotype/uberon/issues/268 [Term] id: UBERON:0001195 name: inferior pancreaticoduodenal artery namespace: uberon def: "The inferior pancreaticoduodenal artery is a branch of the superior mesenteric artery or from its first intestinal branch, opposite the upper border of the inferior part of the duodenum. It courses to the right between the head of the pancreas and duodenum, and then ascends to anastomose with the anterior and posterior superior pancreaticoduodenal artery. It distributes branches to the head of the pancreas and to the descending and inferior parts of the duodenum. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_pancreaticoduodenal_artery] subset: uberon_slim synonym: "arteriae pancreaticoduodenales inferiores" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_pancreaticoduodenal_artery] synonym: "inferior pancreatico-duodenal artery" EXACT [] xref: EMAPA:37086 {source="MA:th"} xref: FMA:14805 xref: http://en.wikipedia.org/wiki/Inferior_pancreaticoduodenal_artery xref: http://linkedlifedata.com/resource/umls/id/C0226319 xref: http://www.snomedbrowser.com/Codes/Details/244273004 xref: MA:0002014 xref: NCIT:C32786 xref: UMLS:C0226319 {source="ncithesaurus:Inferior_Pancreatico-duodenal_artery"} is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009658 ! pancreaticoduodenal artery relationship: branching_part_of UBERON:0001182 ! superior mesenteric artery relationship: part_of UBERON:0001182 ! superior mesenteric artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray533.png [Term] id: UBERON:0001196 name: middle colic artery namespace: uberon def: "The middle colic artery is a branch of the superior mesenteric artery that mostly supplies the transverse colon. It arises just below the pancreas, and, passing downward and forward between the layers of the transverse mesocolon, divides into two branches: right and left. The right branch anastomoses with the right colic artery The left branch anastomoses with the left colic artery, a branch of the inferior mesenteric artery. The arches thus formed are placed about two fingers' breadth from the transverse colon, to which they distribute branches. [WP,unvetted]." [http://en.wikipedia.org/wiki/Middle_colic_artery] subset: uberon_slim synonym: "arteria colica media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_colic_artery] xref: EMAPA:37106 {source="MA:th"} xref: FMA:14810 xref: galen:MiddleColicArtery xref: http://en.wikipedia.org/wiki/Middle_colic_artery xref: http://linkedlifedata.com/resource/umls/id/C0226328 xref: http://www.snomedbrowser.com/Codes/Details/244276007 xref: MA:0002007 xref: NCIT:C52981 xref: UMLS:C0226328 {source="ncithesaurus:Middle_Colic_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001182 ! superior mesenteric artery relationship: part_of UBERON:0001182 ! superior mesenteric artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png [Term] id: UBERON:0001197 name: ileocolic artery namespace: uberon def: "The Ileocolic Artery is the lowest branch arising from the concavity of the superior mesenteric artery. It passes downward and to the right behind the peritoneum toward the right iliac fossa, where it divides into a superior and an inferior branch; the inferior anastomoses with the end of the superior mesenteric artery, the superior with the right colic artery. Supplies the cecum, ileum, and appendix. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ileocolic_artery] subset: uberon_slim synonym: "arteria ileocolica" RELATED LATIN [http://en.wikipedia.org/wiki/Ileocolic_artery] xref: EMAPA:37083 {source="MA:th"} xref: FMA:14815 xref: galen:IleocolicArtery xref: http://linkedlifedata.com/resource/umls/id/C0226323 xref: http://www.snomedbrowser.com/Codes/Details/244279000 xref: Ileocolic:artery xref: MA:0001970 xref: NCIT:C32760 xref: UMLS:C0226323 {source="ncithesaurus:Ileo-colic_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001182 ! superior mesenteric artery relationship: part_of UBERON:0001182 ! superior mesenteric artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png [Term] id: UBERON:0001198 name: superior suprarenal artery namespace: uberon def: "Each (left and right) superior suprarenal artery is a branch of the inferior phrenic artery on that side of the body. The left and right phrenic arteries supply the diaphragm, and come off the aorta. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_suprarenal_artery] subset: uberon_slim synonym: "arteriae suprarenales superiores" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_suprarenal_artery] synonym: "superior adrenal branch of inferior phrenic artery" EXACT [] synonym: "superior suprarenal branch of inferior phrenic artery" EXACT [] xref: EMAPA:37122 {source="MA:th"} xref: FMA:14863 xref: http://en.wikipedia.org/wiki/Superior_suprarenal_artery xref: http://linkedlifedata.com/resource/umls/id/C0580876 xref: http://www.snomedbrowser.com/Codes/Details/303424001 xref: MA:0002057 xref: NCIT:C52736 xref: UMLS:C0580876 {source="ncithesaurus:Superior_Suprarenal_Artery"} is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0005624 ! suprarenal artery intersection_of: UBERON:0005624 ! suprarenal artery intersection_of: branching_part_of UBERON:0012255 ! inferior phrenic artery relationship: branching_part_of UBERON:0012255 ! inferior phrenic artery relationship: part_of UBERON:0012255 ! inferior phrenic artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png [Term] id: UBERON:0001214 name: pancreatic tributary of splenic vein namespace: uberon def: "The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pancreatic_vein] subset: uberon_slim synonym: "pancreatic vein" EXACT [] xref: EMAPA:37678 {source="MA:th"} xref: FMA:15388 xref: http://linkedlifedata.com/resource/umls/id/C0226743 xref: http://www.snomedbrowser.com/Codes/Details/264492008 xref: MA:0002189 xref: NCIT:C53059 xref: Pancreatic:vein xref: UMLS:C0226743 {source="ncithesaurus:Pancreatic_Vein"} is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0003713 ! splenic vein relationship: tributary_of UBERON:0003713 {source="FMA/obol"} ! splenic vein property_value: UBPROP:0000012 "see also MA:0002165 ! lieno-pancreatic vein" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001215 name: inferior mesenteric vein namespace: uberon def: "A blood vessel that drains blood from the large intestine that usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_mesenteric_vein] subset: uberon_slim synonym: "lower mesenteric vein" RELATED [BTO:0002782] synonym: "vena mesenterica inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_mesenteric_vein] xref: BTO:0002782 xref: EHDAA2:0000819 xref: EHDAA:8712 xref: EMAPA:18642 xref: FMA:15391 xref: http://en.wikipedia.org/wiki/Inferior_mesenteric_vein xref: http://linkedlifedata.com/resource/umls/id/C0226754 xref: http://www.snomedbrowser.com/Codes/Details/281055007 xref: MA:0002178 xref: NCIT:C32782 xref: OpenCyc:Mx4rvcV53ZwpEbGdrcN5Y29ycA xref: UMLS:C0226754 {source="ncithesaurus:Inferior_Mesenteric_Vein"} xref: VHOG:0001118 is_a: UBERON:0005617 ! mesenteric vein relationship: part_of UBERON:0003713 ! splenic vein relationship: tributary_of UBERON:0003713 {source="FMA/obol"} ! splenic vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png [Term] id: UBERON:0001216 name: jejunal vein namespace: uberon def: "A tributary of the superior mesenteric vein that drains the jejunum." [http://en.wikipedia.org/wiki/Jejunal_veins, http://orcid.org/0000-0002-6601-2165] synonym: "venae jejunales" RELATED LATIN [http://en.wikipedia.org/wiki/Jejunal_veins] xref: EMAPA:37160 {source="MA:th"} xref: FMA:15402 xref: Jejunal:veins xref: MA:0002153 is_a: UBERON:0002017 {source="FMA"} ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png [Term] id: UBERON:0001217 name: ileal vein namespace: uberon def: "The veins that drain blood from the ileum into the superior mesenteric vein." [ncithesaurus:Ileal_Vein] xref: EMAPA:37149 {source="MA:th"} xref: FMA:15405 xref: http://linkedlifedata.com/resource/umls/id/C1301431 xref: Ileal:veins xref: MA:0002140 xref: NCIT:C53046 xref: UMLS:C1301431 {source="ncithesaurus:Ileal_Vein"} is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein relationship: tributary_of UBERON:0001138 {source="FMA", source="Wikipedia"} ! superior mesenteric vein [Term] id: UBERON:0001218 name: middle colic vein namespace: uberon def: "The middle colic vein drains the transverse colon. It is a tributary of the superior mesenteric vein, and follows the path of its corresponding artery, the middle colic artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Middle_colic_vein] subset: uberon_slim synonym: "vena colica media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_colic_vein] synonym: "vena colica media (intermedia)" EXACT [] xref: EMAPA:37174 {source="MA:th"} xref: FMA:15406 xref: http://en.wikipedia.org/wiki/Middle_colic_vein xref: http://www.snomedbrowser.com/Codes/Details/9018004 xref: MA:0002181 xref: OpenCyc:Mx4rvywYIpwpEbGdrcN5Y29ycA is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein relationship: tributary_of UBERON:0001138 ! superior mesenteric vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png [Term] id: UBERON:0001219 name: ileocolic vein namespace: uberon def: "The ileocolic vein is a vein which drains the ileum, colon, and cecum. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ileocolic_vein] subset: uberon_slim synonym: "vena ileocolica" RELATED LATIN [http://en.wikipedia.org/wiki/Ileocolic_vein] xref: EMAPA:37150 {source="MA:th"} xref: FMA:15408 xref: http://linkedlifedata.com/resource/umls/id/C0226744 xref: http://www.snomedbrowser.com/Codes/Details/36208008 xref: Ileocolic:vein xref: MA:0002141 xref: NCIT:C53047 xref: UMLS:C0226744 {source="ncithesaurus:Ileocolic_Vein"} is_a: UBERON:0001217 ! ileal vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png [Term] id: UBERON:0001226 name: major calyx namespace: uberon def: "portion of the urinary collecting system within the kidney that drains several minor calyces" [http://anatomy.uams.edu/anatomyhtml/kidney.html] comment: major calyx collects urine from several renal papillae; all major calyces unite to form the renal pelvis subset: uberon_slim synonym: "calices renales majores" EXACT LATIN [http://en.wikipedia.org/wiki/Major_calyx] synonym: "calices renales majores" RELATED LATIN [http://en.wikipedia.org/wiki/Major_calyx] synonym: "major calix" EXACT [] xref: EMAPA:18677 xref: FMA:15613 xref: http://www.snomedbrowser.com/Codes/Details/1106008 xref: MA:0001644 xref: Major:calyx is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel relationship: drains UBERON:0001227 ! minor calyx property_value: depicted:by Kidney:PioM.png [Term] id: UBERON:0001227 name: minor calyx namespace: uberon def: "portion of the urinary collecting system within the kidney that drains one renal papilla" [http://anatomy.uams.edu/anatomyhtml/kidney.html] comment: one renal papilla projects into the lumen of one minor calyx; several minor calyces unite to form a major calyx subset: uberon_slim synonym: "calices renales minores" EXACT LATIN [http://en.wikipedia.org/wiki/Minor_calyx] synonym: "calices renales minores" RELATED LATIN [http://en.wikipedia.org/wiki/Minor_calyx] synonym: "minor calix" EXACT [] xref: EMAPA:18678 xref: FMA:15614 xref: http://www.snomedbrowser.com/Codes/Details/26293004 xref: MA:0001645 xref: Minor:calyx is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel property_value: depicted:by Kidney:PioM.png [Term] id: UBERON:0001281 name: hepatic sinusoid namespace: uberon alt_id: UBERON:0003275 def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [http://en.wikipedia.org/wiki/Hepatic_sinusoid, ZFIN:curator] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "hepatic sinusoids" RELATED [] synonym: "liver hepatic sinusoids" EXACT [EHDAA2:0000999] synonym: "liver sinusoid" EXACT [] synonym: "liver sinusoidal blood vessel" EXACT [OBOL:automatic] synonym: "sinusoid of liver" EXACT [OBOL:automatic] synonym: "sinusoidal blood vessel of liver" EXACT [OBOL:automatic] synonym: "vas capillare sinusoideum" EXACT [] synonym: "vas sinusoideum" EXACT LATIN [http://en.wikipedia.org/wiki/Hepatic_sinusoid] xref: EHDAA2:0000999 xref: EMAPA:17365 xref: FMA:17543 xref: Hepatic:sinusoid xref: http://linkedlifedata.com/resource/umls/id/C0227523 xref: http://www.snomedbrowser.com/Codes/Details/67435004 xref: MA:0000367 xref: NCIT:C32733 xref: TAO:0005091 xref: UMLS:C0227523 {source="ncithesaurus:Hepatic_Sinusoid"} xref: VHOG:0000708 xref: ZFA:0005091 is_a: UBERON:0003909 ! sinusoid is_a: UBERON:0015796 ! liver blood vessel relationship: part_of UBERON:0006877 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! vasculature of liver property_value: UBPROP:0000003 "(...) the amphibian liver has characteristics in common with both fish and terrestrial vertebrates. (...) The histological structure of the liver is similar to that in other vertebrates, with hepatocytes arranged in clusters and cords separated by a meshwork of sinusoids and the presence of the traditional triad of portal venule, hepatic arteriole, and bile duct.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000708", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1053/ax.2000.7133 Crawshaw GJ, Weinkle TK, Clinical and pathological aspects of the amphibian liver. Seminars in Avian and Exotic Pet Medicine (2000)"} [Term] id: UBERON:0001308 name: external iliac artery namespace: uberon def: "The external iliac artery is a large artery in the pelvic region that carries blood to the lower limb. The external iliac artery is a paired artery, meaning there is one on each side of the body: a right external iliac artery and left external iliac artery. The external iliac artery is accompanied by the external iliac vein, which is located posterior to the artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/External_iliac_artery] subset: uberon_slim synonym: "arteria iliaca externa" RELATED LATIN [http://en.wikipedia.org/wiki/External_iliac_artery] xref: BTO:0004666 xref: EHDAA2:0000463 xref: EHDAA:4337 xref: EMAPA:17614 xref: FMA:18805 xref: galen:ExternalIliacArtery xref: http://en.wikipedia.org/wiki/External_iliac_artery xref: http://linkedlifedata.com/resource/umls/id/C0226398 xref: http://www.snomedbrowser.com/Codes/Details/181352000 xref: MA:0001973 xref: NCIT:C32558 xref: OpenCyc:Mx4rvkh47pwpEbGdrcN5Y29ycA xref: UMLS:C0226398 {source="ncithesaurus:External_Iliac_Artery"} is_a: UBERON:0005609 {source="MA"} ! iliac artery relationship: part_of UBERON:0001191 ! common iliac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray539.png [Term] id: UBERON:0001309 name: internal iliac artery namespace: uberon def: "The internal iliac artery (formerly known as the hypogastric artery) is the main artery of the pelvis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Internal_iliac_artery] subset: uberon_slim synonym: "arteria iliaca interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_iliac_artery] synonym: "hypogastric artery" RELATED [BTO:0004667] xref: BTO:0004667 xref: EMAPA:17860 xref: FMA:18808 xref: galen:InternalIliacArtery xref: http://en.wikipedia.org/wiki/Internal_iliac_artery xref: http://linkedlifedata.com/resource/umls/id/C0226364 xref: http://www.snomedbrowser.com/Codes/Details/181346001 xref: MA:0001974 xref: NCIT:C32845 xref: UMLS:C0226364 {source="ncithesaurus:Internal_Iliac_Artery"} is_a: UBERON:0005609 {source="MA"} ! iliac artery relationship: part_of UBERON:0001191 ! common iliac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d3/Iliac_artery_bifurcation.PNG [Term] id: UBERON:0001310 name: umbilical artery namespace: uberon def: "The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]." [http://en.wikipedia.org/wiki/Umbilical_artery, https://github.com/obophenotype/uberon/issues/328] subset: pheno_slim subset: uberon_slim synonym: "a. umbilicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Umbilical_artery] xref: BTO:0000841 xref: CALOHA:TS-1077 xref: EHDAA:1026 xref: EHDAA:410 xref: EMAPA:16331 xref: EMAPA:16372 xref: FMA:18820 xref: GAID:516 xref: http://linkedlifedata.com/resource/umls/id/C0041632 xref: http://www.snomedbrowser.com/Codes/Details/261404000 xref: MA:0002072 xref: MESH:D014469 xref: NCIT:C33827 xref: OpenCyc:Mx4rCWdhMGWbEd2AAABQjYGu0g xref: RETIRED_EHDAA2:0002106 xref: Umbilical:artery xref: UMLS:C0041632 {source="ncithesaurus:Umbilical_Artery"} is_a: UBERON:0001637 ! artery is_a: UBERON:0010260 ! umbilical blood vessel property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png property_value: IAO:0000116 "todo - compare with EHDAA2. Check embryonic vs extraembryonic, developmental relationships" xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/issues/328 [Term] id: UBERON:0001311 name: inferior vesical artery namespace: uberon def: "An artery that supplies blood to the lower urinary bladder." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria vesicali inferior" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_vesical_artery] synonym: "arteria vesicalis inferior" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_vesical_artery] synonym: "arteria vesicalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_vesical_artery] xref: EMAPA:37089 {source="MA:th"} xref: FMA:18823 xref: http://en.wikipedia.org/wiki/Inferior_vesical_artery xref: http://linkedlifedata.com/resource/umls/id/C0226377 xref: http://www.snomedbrowser.com/Codes/Details/43210002 xref: MA:0002079 xref: NCIT:C52685 xref: UMLS:C0226377 {source="ncithesaurus:Inferior_Vesical_Artery"} is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009027 ! vesical artery relationship: branching_part_of UBERON:0001309 ! internal iliac artery relationship: part_of UBERON:0001309 ! internal iliac artery property_value: depicted:by https://upload.wikimedia.org/wikipedia/commons/1/13/Inferiorvesical.png [Term] id: UBERON:0001312 name: superior vesical artery namespace: uberon def: "An artery that supplies blood to the upper urinary bladder." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria vesicali superior" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_vesical_artery] synonym: "arteria vesicalis superior" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_vesical_artery] synonym: "arteriae vesicales superiores" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vesical_artery] xref: EMAPA:37123 {source="MA:th"} xref: FMA:18839 xref: http://en.wikipedia.org/wiki/Superior_vesical_artery xref: http://linkedlifedata.com/resource/umls/id/C0226376 xref: http://www.snomedbrowser.com/Codes/Details/113268007 xref: MA:0002080 xref: NCIT:C52686 xref: UMLS:C0226376 {source="ncithesaurus:Superior_Vesical_Artery"} is_a: UBERON:0003468 ! ureteric segment of renal artery is_a: UBERON:0009027 ! vesical artery property_value: depicted:by https://upload.wikimedia.org/wikipedia/commons/0/02/Internal_iliac_branches.PNG property_value: UBPROP:0000011 "The first part of the superior vesical artery represents the terminal section of the previous portion of the umbilical artery (fetal hypogastric artery)[WP]" xsd:string [Term] id: UBERON:0001313 name: iliolumbar artery namespace: uberon def: "The iliolumbar artery is a branch of the posterior trunk of the internal iliac artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Iliolumbar_artery] subset: uberon_slim synonym: "arteria iliolumbalis" RELATED LATIN [http://en.wikipedia.org/wiki/Iliolumbar_artery] synonym: "ilio-lumbar artery" EXACT [] xref: EMAPA:37085 {source="MA:th"} xref: FMA:18845 xref: http://linkedlifedata.com/resource/umls/id/C0226367 xref: http://www.snomedbrowser.com/Codes/Details/113267002 xref: Iliolumbar:artery xref: MA:0001976 xref: NCIT:C52859 xref: UMLS:C0226367 {source="ncithesaurus:Iliolumbar_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001309 ! internal iliac artery relationship: part_of UBERON:0001309 ! internal iliac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png [Term] id: UBERON:0001314 name: obturator artery namespace: uberon def: "The obturator artery passes antero-inferiorly (forwards and downwards) on the lateral wall of the pelvis, to the upper part of the obturator foramen, and, escaping from the pelvic cavity through the obturator canal, it divides into both an anterior and a posterior branch. [WP,unvetted]." [http://en.wikipedia.org/wiki/Obturator_artery] subset: uberon_slim synonym: "arteria obturatoria" RELATED LATIN [http://en.wikipedia.org/wiki/Obturator_artery] xref: EMAPA:37671 {source="MA:th"} xref: FMA:18865 xref: http://linkedlifedata.com/resource/umls/id/C0226369 xref: http://www.snomedbrowser.com/Codes/Details/244302006 xref: MA:0002008 xref: NCIT:C33190 xref: Obturator:artery xref: UMLS:C0226369 {source="ncithesaurus:Obturator_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001309 ! internal iliac artery relationship: part_of UBERON:0001309 ! internal iliac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray547.png [Term] id: UBERON:0001315 name: superior gluteal artery namespace: uberon def: "The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_gluteal_artery] subset: uberon_slim synonym: "arteria glutea superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_gluteal_artery] synonym: "arteria glutealis superior" EXACT [] xref: EMAPA:37120 {source="MA:th"} xref: FMA:18868 xref: http://en.wikipedia.org/wiki/Superior_gluteal_artery xref: http://linkedlifedata.com/resource/umls/id/C0226371 xref: http://www.snomedbrowser.com/Codes/Details/181354004 xref: MA:0002054 xref: NCIT:C32688 xref: UMLS:C0226371 {source="ncithesaurus:Gluteal_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001309 ! internal iliac artery relationship: part_of UBERON:0001309 ! internal iliac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png [Term] id: UBERON:0001316 name: external iliac vein namespace: uberon def: "A large vein that connects the femoral vein to the common iliac vein. Their origin is at the inferior margin of the inguinal ligaments and they terminate when they join the internal iliac veins (to form the common iliac veins). Both external iliac veins are accompanied along their course by external iliac arteries. [WP,modified]." [http://en.wikipedia.org/wiki/External_iliac_vein] subset: uberon_slim synonym: "vena iliaca externa" RELATED LATIN [http://en.wikipedia.org/wiki/External_iliac_vein] xref: EHDAA2:0000464 xref: EMAPA:37144 {source="MA:th"} xref: FMA:18883 xref: galen:ExternalIliacVein xref: http://en.wikipedia.org/wiki/External_iliac_vein xref: http://linkedlifedata.com/resource/umls/id/C0226761 xref: http://www.snomedbrowser.com/Codes/Details/181400000 xref: MA:0002144 xref: NCIT:C32560 xref: OpenCyc:Mx4rwQUYtZwpEbGdrcN5Y29ycA xref: UMLS:C0226761 {source="ncithesaurus:External_Iliac_Vein"} is_a: UBERON:0005610 {source="MA"} ! iliac vein property_value: depicted:by Iliac:veins.gif [Term] id: UBERON:0001317 name: internal iliac vein namespace: uberon def: "A vein that begins near the upper part of the greater sciatic foramen, passes upward behind and slightly medial to the hypogastric artery and, at the brim of the pelvis, joins with the external iliac to form the common iliac vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Internal_iliac_vein] subset: uberon_slim synonym: "hypogastric vein" RELATED [http://en.wikipedia.org/wiki/Internal_iliac_vein, MA:0002139] synonym: "v. hypogastrica" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_iliac_vein] synonym: "v. iliaca interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_iliac_vein] xref: EHDAA2:0000874 xref: EMAPA:37148 {source="MA:th"} xref: FMA:18884 xref: galen:InternalIliacVein xref: http://en.wikipedia.org/wiki/Internal_iliac_vein xref: http://linkedlifedata.com/resource/umls/id/C0226764 xref: http://www.snomedbrowser.com/Codes/Details/181399007 xref: MA:0002139 xref: MA:0002145 xref: NCIT:C32847 xref: UMLS:C0226764 {source="ncithesaurus:Internal_Iliac_Vein"} xref: VHOG:0000749 is_a: UBERON:0005610 {source="MA"} ! iliac vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Internaliliacv.png [Term] id: UBERON:0001318 name: inferior vesical vein namespace: uberon xref: EMAPA:37158 {source="MA:th"} xref: FMA:18890 xref: MA:0002264 is_a: UBERON:0002460 {is_inferred="true", source="MA"} ! vesical vein property_value: IAO:0000116 "inferred from artery" xsd:string [Term] id: UBERON:0001319 name: vaginal vein namespace: uberon def: "One the veins that drains the vaginal venous plexus, into the hypogastric veins. [WP,modified]." [http://en.wikipedia.org/wiki/Vaginal_venous_plexus] subset: uberon_slim synonym: "vagina vein" EXACT [OBOL:automatic] synonym: "vein of vagina" EXACT [OBOL:automatic] xref: EMAPA:37796 {source="MA:th"} xref: FMA:18899 xref: http://www.snomedbrowser.com/Codes/Details/424336009 xref: MA:0002251 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001317 ! internal iliac vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png [Term] id: UBERON:0001320 name: iliolumbar vein namespace: uberon def: "The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Iliolumbar_vein] subset: uberon_slim synonym: "ilio-lumbar vein" EXACT [] synonym: "vena iliolumbalis" RELATED LATIN [http://en.wikipedia.org/wiki/Iliolumbar_vein] xref: EMAPA:37152 {source="MA:th"} xref: FMA:18902 xref: http://linkedlifedata.com/resource/umls/id/C0226760 xref: http://www.snomedbrowser.com/Codes/Details/286793006 xref: Iliolumbar:vein xref: MA:0002146 xref: NCIT:C53048 xref: UMLS:C0226760 {source="ncithesaurus:Iliolumbar_Vein"} is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001317 ! internal iliac vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png [Term] id: UBERON:0001321 name: obturator vein namespace: uberon def: "The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]." [http://en.wikipedia.org/wiki/Obturator_veins] subset: uberon_slim xref: EMAPA:37677 {source="MA:th"} xref: FMA:18914 xref: http://linkedlifedata.com/resource/umls/id/C0226776 xref: http://www.snomedbrowser.com/Codes/Details/20146009 xref: MA:0002183 xref: NCIT:C53056 xref: Obturator:veins xref: UMLS:C0226776 {source="ncithesaurus:Obturator_Vein"} is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001317 ! internal iliac vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png [Term] id: UBERON:0001330 name: pampiniform plexus namespace: uberon def: "The pampiniform plexus is a network of many small veins found in the male spermatic cord. It is formed by the union of multiple spermatic veins from the back of the testis and tributaries from the epididymis. The veins of the plexus ascend along the cord in front of the ductus deferens. Below the subcutaneous inguinal ring they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins. These again unite to form a single vein, the testicular vein, which opens on the right side into the inferior vena cava, at an acute angle, and on the left side into the left renal vein, at a right angle. The pampinoform plexus forms the chief mass of the cord. In addition to its function in venous return from the testes, the pampiniform plexus also plays a role in the temperature regulation of the testes. It acts as a heat exchanger, cooling blood in adjacent arteries. An abnormal enlargement of the pampiniform plexus is a medical condition called varicocele. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pampiniform_venous_plexus] subset: uberon_slim synonym: "pampiniform venous plexus" EXACT [] synonym: "plexus of veins of fascia of prostate" EXACT [] synonym: "plexus venosus pampiniformis" EXACT LATIN [FMA:19607, FMA:TA] synonym: "venous plexus of fascia of prostate" EXACT [] synonym: "venous plexus of fascia of prostate gland" EXACT [] xref: EMAPA:37385 {source="MA:th"} xref: FMA:19607 xref: http://en.wikipedia.org/wiki/Pampiniform_venous_plexus xref: http://www.snomedbrowser.com/Codes/Details/279661001 xref: MA:0001866 is_a: UBERON:0001593 ! venous plexus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/af/Gray1147.png [Term] id: UBERON:0001340 name: dorsal artery of penis namespace: uberon def: "The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsal_artery_of_penis] subset: uberon_slim synonym: "arteria dorsalis penis" EXACT [BTO:0005088] synonym: "dorsal artery of the penis" RELATED [BTO:0005088] synonym: "dorsal penile artery" EXACT [FMA:19795] synonym: "dorsal penis artery" EXACT [MA:0001946] xref: BTO:0005088 xref: EMAPA:37080 {source="MA:th"} xref: FMA:19795 xref: http://en.wikipedia.org/wiki/Dorsal_artery_of_penis xref: http://www.snomedbrowser.com/Codes/Details/244294001 xref: MA:0001946 is_a: UBERON:0003835 ! abdominal segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0007315 ! internal pudendal artery relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png [Term] id: UBERON:0001354 name: inferior epigastric artery namespace: uberon def: "The artery that arises from the external iliac artery and anastomoses with the superior epigastric artery." [http://en.wikipedia.org/wiki/Inferior_epigastric_artery, http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria epigastrica inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_epigastric_artery] xref: EMAPA:18751 xref: FMA:20686 xref: http://en.wikipedia.org/wiki/Inferior_epigastric_artery xref: http://linkedlifedata.com/resource/umls/id/C0226401 xref: http://www.snomedbrowser.com/Codes/Details/244288009 xref: MA:0001978 xref: NCIT:C52861 xref: OpenCyc:Mx4rdBvQc6gOEdudWQACs5b6Bw xref: UMLS:C0226401 {source="ncithesaurus:Inferior_Epigastric_Artery"} is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0006349 ! epigastric artery intersection_of: UBERON:0006349 ! epigastric artery intersection_of: anastomoses_with UBERON:0007153 ! superior epigastric artery intersection_of: branching_part_of UBERON:0001308 ! external iliac artery relationship: anastomoses_with UBERON:0007153 ! superior epigastric artery relationship: branching_part_of UBERON:0001308 ! external iliac artery relationship: part_of UBERON:0001308 ! external iliac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray547.png [Term] id: UBERON:0001355 name: deep femoral artery namespace: uberon def: "The profunda femoris artery (also known as the deep femoral artery, or the deep artery of the thigh) is a branch of the femoral artery that, as its name suggests, travels more deeply (posteriorly) than the rest of the femoral artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Deep_femoral_artery] subset: uberon_slim synonym: "arteria profunda femoris" EXACT [] synonym: "profunda femoris artery" EXACT [] xref: EMAPA:37216 {source="MA:th"} xref: FMA:20741 xref: http://en.wikipedia.org/wiki/Deep_femoral_artery xref: http://linkedlifedata.com/resource/umls/id/C0226455 xref: http://www.snomedbrowser.com/Codes/Details/181348000 xref: MA:0002027 xref: NCIT:C32436 xref: UMLS:C0226455 {source="ncithesaurus:Deep_Femoral_Artery"} is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0002060 ! femoral artery intersection_of: part_of UBERON:0035551 ! deep vasculature relationship: branching_part_of UBERON:0002060 ! femoral artery relationship: part_of UBERON:0002060 ! femoral artery relationship: part_of UBERON:0035551 ! deep vasculature property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png [Term] id: UBERON:0001356 name: medial circumflex femoral artery namespace: uberon def: "The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_circumflex_femoral_artery] subset: uberon_slim synonym: "arteria circumflexa femoris medialis" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_circumflex_femoral_artery] synonym: "medial femoral circumflex artery" EXACT [] xref: EMAPA:37670 {source="MA:th"} xref: FMA:20799 xref: http://en.wikipedia.org/wiki/Medial_circumflex_femoral_artery xref: http://www.snomedbrowser.com/Codes/Details/244326008 xref: MA:0001996 is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001355 {source="FMA"} ! deep femoral artery relationship: part_of UBERON:0001355 ! deep femoral artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c5/Circumflex_femoral_arteries.png [Term] id: UBERON:0001357 name: inferior rectal artery namespace: uberon def: "The inferior rectal artery (inferior hemorrhoidal artery) is an artery that supplies blood to the lower half of the anal canal. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_rectal_artery] subset: uberon_slim synonym: "arteria haemorrhoidalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_rectal_artery] synonym: "arteria rectalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_rectal_artery] synonym: "inferior haemorrhoidal artery" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] synonym: "inferior hemorrhoidal arteries" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] synonym: "inferior hemorrhoidal artery" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] synonym: "inferior hemorrhoidal branches" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] synonym: "inferior hemorrhoidal vessels" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] synonym: "inferior rectal arteries" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] xref: EMAPA:37087 {source="MA:th"} xref: FMA:20824 xref: http://en.wikipedia.org/wiki/Inferior_rectal_artery xref: http://linkedlifedata.com/resource/umls/id/C0226393 xref: http://www.snomedbrowser.com/Codes/Details/244304007 xref: MA:0001979 xref: NCIT:C52938 xref: UMLS:C0226393 {source="ncithesaurus:Inferior_Rectal_Artery"} is_a: UBERON:0003835 ! abdominal segment blood vessel is_a: UBERON:0035039 ! rectal artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png [Term] id: UBERON:0001358 name: perineal artery namespace: uberon def: "The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinæi superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinæi superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinæi superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]." [http://en.wikipedia.org/wiki/Perineal_artery] subset: uberon_slim synonym: "arteria perinei" RELATED LATIN [http://en.wikipedia.org/wiki/Perineal_artery] synonym: "superficial perineal artery" NARROW [http://en.wikipedia.org/wiki/Perineal_artery] xref: EMAPA:37107 {source="MA:th"} xref: FMA:20836 xref: http://linkedlifedata.com/resource/umls/id/C0226394 xref: http://www.snomedbrowser.com/Codes/Details/244303001 xref: MA:0002017 xref: NCIT:C52994 xref: Perineal:artery xref: UMLS:C0226394 {source="ncithesaurus:Perineal_Artery"} is_a: UBERON:0003835 ! abdominal segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0007315 ! internal pudendal artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png [Term] id: UBERON:0001360 name: deep circumflex iliac vein namespace: uberon def: "A vein that corresponds to the deep circumflex iliac artery and empties near or in a common trunk with the inferior epigastric vein into the external iliac vein; deep circumflex iliac vein." [http://medical-dictionary.thefreedictionary.com/circumflex+iliac+vein] subset: uberon_slim synonym: "circumflex iliac vein" EXACT [] synonym: "deep iliac circumflex vein" EXACT [] synonym: "iliac circumflex vein" EXACT [] synonym: "vena circumflexa iliaca profunda" EXACT [] synonym: "vena circumflexa ilium profunda" RELATED LATIN [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_vein] xref: EMAPA:37511 {source="MA:th"} xref: FMA:21182 xref: http://en.wikipedia.org/wiki/Deep_circumflex_iliac_vein xref: http://www.snomedbrowser.com/Codes/Details/11653007 xref: MA:0002099 is_a: UBERON:0035552 ! deep vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png [Term] id: UBERON:0001361 name: femoral vein namespace: uberon def: "In the human body, the femoral vein is a blood vessel that accompanies the femoral artery in the femoral sheath. It begins at the adductor canal (also known as Hunter's canal) and is a continuation of the popliteal vein. It ends at the inferior margin of the inguinal ligament, where it becomes the external iliac vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Femoral_vein] subset: uberon_slim synonym: "vena femoralis" RELATED LATIN [http://en.wikipedia.org/wiki/Femoral_vein] xref: AAO:0010237 xref: EMAPA:17876 xref: Femoral:vein xref: FMA:21185 xref: GAID:533 xref: galen:FemoralVein xref: http://linkedlifedata.com/resource/umls/id/C0015809 xref: http://www.snomedbrowser.com/Codes/Details/362071002 xref: MA:0002118 xref: MESH:D005268 xref: NCIT:C12716 xref: OpenCyc:Mx4rwFXTLJwpEbGdrcN5Y29ycA xref: UMLS:C0015809 {source="ncithesaurus:Femoral_Vein"} is_a: UBERON:0001638 ! vein is_a: UBERON:0003516 ! hindlimb blood vessel property_value: UBPROP:0000001 "Either of the primary veins in the hindlimbs which collect blood from the hindlimb region.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010237", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001362 name: perineal vein namespace: uberon xref: EMAPA:37179 {source="MA:th"} xref: FMA:21246 xref: http://www.snomedbrowser.com/Codes/Details/312507009 xref: MA:0002193 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001317 ! internal iliac vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0001363 name: great saphenous vein namespace: uberon def: "The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]." [http://en.wikipedia.org/wiki/Great_saphenous_vein] subset: uberon_slim synonym: "greater saphenous vein" EXACT [] synonym: "large saphenous vein" RELATED [BTO:0003271] synonym: "long saphenous vein" RELATED [] synonym: "vena saphena magna" RELATED LATIN [http://en.wikipedia.org/wiki/Great_saphenous_vein] xref: BTO:0003271 xref: EMAPA:37147 {source="MA:th"} xref: FMA:21376 xref: galen:GreaterSaphenousVein xref: galen:GreatSaphenousVein xref: http://en.wikipedia.org/wiki/Great_saphenous_vein xref: http://linkedlifedata.com/resource/umls/id/C0392907 xref: http://www.snomedbrowser.com/Codes/Details/181402008 xref: MA:0002216 xref: NCIT:C33004 xref: UMLS:C0392907 {source="ncithesaurus:Long_Saphenous_Vein"} is_a: UBERON:0007318 ! saphenous vein relationship: part_of UBERON:0001361 ! femoral vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/51/Great_saphenous_vein.png [Term] id: UBERON:0001390 name: sural artery namespace: uberon def: "The sural arteries (inferior muscular arteries) are two large branches, which are distributed to the Gastrocnemius, Soleus, and Plantaris. The term applies to any of four or five arteries arising from the popliteal artery, with distribution to the muscles and integument of the calf, and with anastomoses to the posterior tibial, medial and lateral inferior genicular arteries. [WP,unvetted]." [http://en.wikipedia.org/wiki/Sural_artery] subset: uberon_slim xref: EMAPA:37125 {source="MA:th"} xref: FMA:22570 xref: http://linkedlifedata.com/resource/umls/id/C0226464 xref: http://www.snomedbrowser.com/Codes/Details/302693002 xref: MA:0002058 xref: NCIT:C52734 xref: Sural:artery xref: UMLS:C0226464 {source="ncithesaurus:External_Sural_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/60/Gray551.png property_value: IAO:0000116 "TODO - check NCITA class" xsd:string [Term] id: UBERON:0001394 name: axillary artery namespace: uberon def: "Artery that supplies the axilla" [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria axillaris" EXACT LATIN [http://en.wikipedia.org/wiki/Axillary_artery] synonym: "axillary part of subclavian artery" EXACT [FMA:22654] synonym: "axillary part of trunk of subclavian artery" EXACT [] xref: Axillary:artery xref: EMAPA:18749 xref: FMA:22654 xref: GAID:473 xref: galen:AxillaryArtery xref: http://linkedlifedata.com/resource/umls/id/C0004455 xref: http://www.snomedbrowser.com/Codes/Details/181321001 xref: MA:0002573 xref: MESH:D001366 xref: NCIT:C32169 xref: OpenCyc:Mx4rwRh-vZwpEbGdrcN5Y29ycA xref: UMLS:C0004455 {source="ncithesaurus:Axillary_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by Axillary:limits.PNG property_value: UBPROP:0000008 "In human anatomy, the axillary artery is a large blood vessel that conveys oxygenated blood to the lateral aspect of the thorax, the axilla (armpit) and the upper limb. Its origin is at the lateral margin of the first rib, before which it is called the subclavian artery. After passing the lower margin of teres major it becomes the brachial artery." xsd:string [Term] id: UBERON:0001395 name: thoraco-acromial artery namespace: uberon def: "The thoracoacromial artery (acromiothoracic artery; thoracic axis) is a short trunk, which arises from the forepart of the axillary artery, its origin being generally overlapped by the upper edge of the Pectoralis minor. [WP,unvetted]." [http://en.wikipedia.org/wiki/Thoraco-acromial_artery] subset: uberon_slim synonym: "acromiothoracic artery" EXACT [] synonym: "thoracoacromial artery" EXACT [] xref: EMAPA:37128 {source="MA:th"} xref: FMA:22671 xref: http://linkedlifedata.com/resource/umls/id/C0226420 xref: http://www.snomedbrowser.com/Codes/Details/244315002 xref: MA:0002064 xref: NCIT:C32046 xref: Thoraco-acromial:artery xref: UMLS:C0226420 {source="ncithesaurus:Acromial_Thoracic_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by Axillary:branches.PNG [Term] id: UBERON:0001396 name: lateral thoracic artery namespace: uberon def: "A blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the serratus ventralis muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_thoracic_artery] subset: uberon_slim synonym: "arteria thoracalis lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_thoracic_artery] synonym: "external mammary artery" EXACT [] xref: EMAPA:37095 {source="MA:th"} xref: FMA:22674 xref: http://en.wikipedia.org/wiki/Lateral_thoracic_artery xref: http://linkedlifedata.com/resource/umls/id/C0226421 xref: http://www.snomedbrowser.com/Codes/Details/206135006 xref: MA:0001989 xref: NCIT:C52951 xref: UMLS:C0226421 {source="ncithesaurus:Lateral_Thoracic_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by Axillary:branches.PNG [Term] id: UBERON:0001397 name: subscapular artery namespace: uberon def: "The subscapular artery, the largest branch of the axillary artery, arises at the lower border of the Subscapularis, which it follows to the inferior angle of the scapula, where it anastomoses with the lateral thoracic and intercostal arteries and with the descending branch of the transverse cervical, and ends in the neighboring muscles. About 4 cm. from its origin it gives off two branches, first the scapular circumflex artery and then the thoracodorsal artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Subscapular_artery] subset: uberon_slim synonym: "arteria subscapularis" RELATED LATIN [http://en.wikipedia.org/wiki/Subscapular_artery] xref: EMAPA:37116 {source="MA:th"} xref: FMA:22677 xref: http://linkedlifedata.com/resource/umls/id/C0226422 xref: http://www.snomedbrowser.com/Codes/Details/244311006 xref: MA:0002050 xref: NCIT:C33650 xref: Subscapular:artery xref: UMLS:C0226422 {source="ncithesaurus:Subscapular_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by Axillary:branches.PNG [Term] id: UBERON:0001398 name: brachial artery namespace: uberon def: "The brachial artery is the major blood vessel of the (upper) arm. It is the continuation of the axillary artery beyond the lower margin of teres major muscle. It continues down the ventral surface of the arm until it reaches the cubital fossa at the elbow. It then divides into the radial and ulnar arteries which run down the forearm. In some individuals, the bifurcation occurs much earlier and the ulnar and radial arteries extend through the upper arm. The pulse of the brachial artery is palpable on the anterior aspect of the elbow, medial to the tendon of the biceps, and, with the use of a stethoscope and sphygmomanometer (blood pressure cuff) often used to measure the blood pressure. The brachial artery is closely related to the median nerve; in proximal regions, the median nerve is immediately lateral to the brachial artery. Distally, the median nerve crosses the medial side of the brachial artery and lies anterior to the elbow joint. [WP,unvetted]." [http://en.wikipedia.org/wiki/Brachial_artery] subset: efo_slim subset: uberon_slim synonym: "arteria brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_artery] synonym: "brachial part of trunk of subclavian artery" EXACT [] xref: AAO:0010504 xref: Brachial:artery xref: EFO:0004231 xref: FMA:22689 xref: GAID:475 xref: galen:BrachialArtery xref: http://linkedlifedata.com/resource/umls/id/C0006087 xref: http://www.snomedbrowser.com/Codes/Details/181322008 xref: MA:0001921 xref: MESH:D001916 xref: NCIT:C12681 xref: OpenCyc:Mx4rwM-i5JwpEbGdrcN5Y29ycA xref: UMLS:C0006087 {source="ncithesaurus:Brachial_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray525.png property_value: UBPROP:0000001 "Part of the subclavian artery which supplies blood to the forelimb.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010504", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001399 name: deep brachial artery namespace: uberon def: "The arteria profunda brachii (also known as deep artery of the arm and the deep brachial artery) is a large vessel which arises from the medial and back part of the brachial, just below the lower border of the Teres major. [WP,unvetted]." [http://en.wikipedia.org/wiki/Deep_brachial_artery] subset: uberon_slim synonym: "arteria profunda brachii" EXACT LATIN [FMA:22695, FMA:TA] synonym: "profunda brachii artery" EXACT [] xref: EMAPA:37215 {source="MA:th"} xref: FMA:22695 xref: http://en.wikipedia.org/wiki/Deep_brachial_artery xref: http://www.snomedbrowser.com/Codes/Details/41065002 xref: MA:0002026 is_a: UBERON:0001637 ! artery is_a: UBERON:0003507 ! arm blood vessel property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/92/Gray526.png [Term] id: UBERON:0001404 name: radial artery namespace: uberon def: "branch of the brachial artery beginning below the elbow and extending down the forearm around the wrist and into the palm." [https://www.vocabulary.com/dictionary/arteria%20radialis] subset: uberon_slim synonym: "arteria radialis" RELATED LATIN [http://en.wikipedia.org/wiki/Radial_artery] xref: EMAPA:37112 {source="MA:th"} xref: FMA:22730 xref: GAID:506 xref: galen:RadialArtery xref: http://linkedlifedata.com/resource/umls/id/C0162857 xref: http://www.snomedbrowser.com/Codes/Details/181332001 xref: MA:0002034 xref: MESH:D017534 xref: NCIT:C12838 xref: OpenCyc:Mx4rvxzeR5wpEbGdrcN5Y29ycA xref: Radial:artery xref: UMLS:C0162857 {source="ncithesaurus:Radial_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg [Term] id: UBERON:0001406 name: ulnar artery namespace: uberon def: "The ulnar artery is the main blood vessel, with oxygenated blood, of the medial aspect of the forearm. It arises from the brachial artery and terminates in the superficial palmar arch, which joins with the superficial branch of the radial artery. It is palpable on the anterior and medial aspect of the wrist. Along its course, it is accompanied by a similarly named vein or veins, the ulnar vein or ulnar veins. The ulnar artery, the larger of the two terminal branches of the brachial, begins a little below the bend of the elbow in the cubital fossa, and, passing obliquely downward, reaches the ulnar side of the forearm at a point about midway between the elbow and the wrist. It then runs along the ulnar border to the wrist, crosses the transverse carpal ligament on the radial side of the pisiform bone, and immediately beyond this bone divides into two branches, which enter into the formation of the superficial and deep volar arches. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ulnar_artery] subset: uberon_slim synonym: "arteria ulnaris" EXACT LATIN [http://en.wikipedia.org/wiki/Ulnar_artery] xref: EMAPA:37675 {source="MA:th"} xref: FMA:22796 xref: GAID:515 xref: galen:UlnarArtery xref: http://linkedlifedata.com/resource/umls/id/C0162858 xref: http://www.snomedbrowser.com/Codes/Details/181333006 xref: MA:0002069 xref: MESH:D017535 xref: NCIT:C12839 xref: OpenCyc:Mx4rwAF2PJwpEbGdrcN5Y29ycA xref: Ulnar:artery xref: UMLS:C0162858 {source="ncithesaurus:Ulnar_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg [Term] id: UBERON:0001410 name: common palmar digital artery namespace: uberon def: "Three common palmar digital arteries arise from the convexity of the superficial palmar arch and proceed distally on the second, third, and fourth lumbricales muscles." [http://en.wikipedia.org/wiki/Common_palmar_digital_artery] subset: uberon_slim synonym: "common palmar digital arteries" EXACT [] xref: EMAPA:37207 {source="MA:th"} xref: FMA:22852 xref: http://en.wikipedia.org/wiki/Common_palmar_digital_artery xref: http://linkedlifedata.com/resource/umls/id/C0226446 xref: http://www.snomedbrowser.com/Codes/Details/38396009 xref: MA:0001957 xref: NCIT:C52744 xref: UMLS:C0226446 {source="ncithesaurus:Common_Palmar_Digital_Artery"} is_a: UBERON:0006141 ! palmar digital artery property_value: UBPROP:0000012 "the MA term, even though plural, represents the singular, as it is an isa child of artery" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001411 name: basilic vein namespace: uberon def: "A superficial vein of the upper limb that drain parts of manus and forearm." [http://en.wikipedia.org/wiki/Basilic_vein] subset: uberon_slim synonym: "basilic vein of forearm" EXACT [] synonym: "vena basilica antebrachii" EXACT LATIN [FMA:22908, FMA:TA] xref: Basilic:vein xref: EMAPA:37439 {source="MA:th"} xref: FMA:22908 xref: galen:BasilicVein xref: http://linkedlifedata.com/resource/umls/id/C0226801 xref: http://www.snomedbrowser.com/Codes/Details/181393008 xref: MA:0002086 xref: NCIT:C32197 xref: OpenCyc:Mx4rvwrxEpwpEbGdrcN5Y29ycA xref: UMLS:C0226801 {source="ncithesaurus:Basilic_Vein"} is_a: UBERON:0003515 ! forelimb blood vessel is_a: UBERON:0035550 ! superficial vein relationship: part_of UBERON:0000985 ! axillary vein relationship: part_of UBERON:0001587 ! subclavian vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png property_value: UBPROP:0000008 "It originates on the medial (ulnar) side of the dorsal venous network of the manus, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture." xsd:string {source="WP,unvetted"} [Term] id: UBERON:0001412 name: common palmar digital vein namespace: uberon comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. synonym: "proximal palmar digital vein" EXACT [http://en.wikipedia.org/wiki/Palmar_digital_veins] xref: EMAPA:37222 {source="MA:th"} xref: FMA:22923 xref: MA:0002121 is_a: UBERON:0004563 ! forelimb digital vein [Term] id: UBERON:0001413 name: brachial vein namespace: uberon def: "A vein that accompanies the brachial artery between the shoulder and the elbow." [UBERON:cjm] subset: uberon_slim xref: AAO:0010512 xref: Brachial:vein xref: EMAPA:37445 {source="MA:th"} xref: FMA:22934 xref: galen:BrachialVein xref: http://linkedlifedata.com/resource/umls/id/C0226812 xref: http://www.snomedbrowser.com/Codes/Details/181390006 xref: MA:0002087 xref: NCIT:C12883 xref: OpenCyc:Mx4rwS3In5wpEbGdrcN5Y29ycA xref: UMLS:C0226812 {source="ncithesaurus:Brachial_Vein"} is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! arm blood vessel relationship: part_of UBERON:0000985 ! axillary vein relationship: part_of UBERON:0001587 ! subclavian vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png property_value: UBPROP:0000001 "Vein which collects blood from the forelimb and drains into the subclavian vein.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010512", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001414 name: median basilic vein namespace: uberon def: "A vein between the biceps and pronator radii teres muscles that unites with the common ulnar vein to form the basilic vein within the forearm." [ncithesaurus:Median_Basilic_Vein] subset: uberon_slim synonym: "medial antecubital vein" RELATED [http://en.wikipedia.org/wiki/Median_cubital_vein] synonym: "median cubital" RELATED [http://en.wikipedia.org/wiki/Median_cubital_vein] synonym: "median cubital vein" EXACT [http://en.wikipedia.org/wiki/Median_cubital_vein, MA:0002176] synonym: "vena mediana cubiti" RELATED LATIN [http://en.wikipedia.org/wiki/Median_cubital_vein] xref: EMAPA:37173 {source="MA:th"} xref: FMA:22963 xref: http://en.wikipedia.org/wiki/Median_cubital_vein xref: http://linkedlifedata.com/resource/umls/id/C0226807 xref: http://www.snomedbrowser.com/Codes/Details/181392003 xref: http://www.snomedbrowser.com/Codes/Details/368496000 xref: MA:0002176 xref: NCIT:C33070 xref: OpenCyc:Mx4rvzQSYZwpEbGdrcN5Y29ycA is_a: UBERON:0001411 ! basilic vein relationship: tributary_of UBERON:0001411 {source="FMA/obol"} ! basilic vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png property_value: IAO:0000116 "Merged median cubital and basilic veins on basis of wikipedia synonym - needs verificied" xsd:string [Term] id: UBERON:0001420 name: subscapular vein namespace: uberon def: "a vein formed by the confluence of the thoracodorsal and circumflex scapular veins and accompanying the subscapular artery to drain into the axillary vein." [http://www.medilexicon.com/medicaldictionary.php?t=97509] synonym: "vena subscapularis" EXACT LATIN [] xref: EMAPA:37190 {source="MA:th"} xref: FMA:23113 xref: MA:0002224 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0000985 ! axillary vein relationship: part_of UBERON:0001587 ! subclavian vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0001422 name: facial lymphatic vessel namespace: uberon def: "A lymphatic vessel that is part of a face [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "buccal lymphatic vessel" EXACT [] synonym: "face lymph vessel" EXACT [OBOL:automatic] synonym: "face lymphatic vessel" EXACT [OBOL:automatic] synonym: "FL" RELATED [] synonym: "lymph vessel of face" EXACT [OBOL:automatic] synonym: "lymphatic vessel of face" EXACT [OBOL:automatic] xref: FMA:233946 xref: TAO:0005108 xref: ZFA:0005108 is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0011363 ! cranial lymph vasculature [Term] id: UBERON:0001425 name: pectoral lymphatic vessel namespace: uberon subset: vertebrate_core synonym: "PL" RELATED ABBREVIATION [] xref: FMA:234865 xref: TAO:0005107 xref: ZFA:0005107 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0001426 name: jugular lymphatic vessel namespace: uberon subset: vertebrate_core synonym: "JL" RELATED ABBREVIATION [] synonym: "JLV" BROAD ABBREVIATION [ZFA:0005109] xref: FMA:234908 xref: TAO:0005109 xref: ZFA:0005109 is_a: UBERON:0001473 ! lymphatic vessel relationship: develops_from UBERON:0011765 ! jugular lymph sac [Term] id: UBERON:0001472 name: vaginal venous plexus namespace: uberon def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vaginal_venous_plexus] subset: uberon_slim synonym: "plexus venosus vaginalis" RELATED LATIN [http://en.wikipedia.org/wiki/Vaginal_venous_plexus] synonym: "venous vaginal plexus" EXACT [] xref: EMAPA:37801 {source="MA:th"} xref: FMA:29713 xref: http://en.wikipedia.org/wiki/Vaginal_venous_plexus xref: http://www.snomedbrowser.com/Codes/Details/294653003 xref: MA:0002257 is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0006876 ! vasculature of organ property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png [Term] id: UBERON:0001473 name: lymphatic vessel namespace: uberon def: "A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, http://en.wikipedia.org/wiki/Lymphatic_vessel] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "lymph vessel" EXACT [] synonym: "vas lymphaticum" RELATED LATIN [http://en.wikipedia.org/wiki/Lymphatic_vessel] xref: AAO:0011005 xref: BTO:0000752 xref: CALOHA:TS-2102 xref: EFO:0000873 xref: EMAPA:35532 xref: FMA:30315 xref: http://linkedlifedata.com/resource/umls/id/C0229889 xref: http://www.snomedbrowser.com/Codes/Details/279089004 xref: Lymphatic:vessel xref: MA:0000138 xref: MAT:0000443 xref: NCIT:C33038 xref: OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA xref: TAO:0005105 xref: UMLS:C0229889 {source="ncithesaurus:Lymphatic_Vessel"} xref: VHOG:0001249 xref: XAO:0000375 disjoint_from: UBERON:0001981 ! blood vessel relationship: has_part UBERON:0002391 ! lymph relationship: part_of UBERON:0004536 ! lymph vasculature property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/44/Illu_lymph_capillary.jpg property_value: RO:0002174 NCBITaxon:8342 {source="https://doi.org/10.1152/japplphysiol.00201.2013"} property_value: UBPROP:0000001 "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005105", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "A vessel that contains or conveys lymph.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011005", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "Tetrapods have evolved distinct lymphatic systems, in which lymphatic capillaries help drain most of the tissues of the body.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001249", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.627"} [Term] id: UBERON:0001496 name: ascending aorta namespace: uberon def: "The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta[GO]. A portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heart's axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]" [GO:0035905, http://en.wikipedia.org/wiki/Ascending_aorta] subset: pheno_slim subset: uberon_slim synonym: "aorta ascendens" RELATED LATIN [http://en.wikipedia.org/wiki/Ascending_aorta] synonym: "ascending thoracic aorta" EXACT [EMAPA:17014] synonym: "pars ascendens aortae" EXACT [] synonym: "pars ascendens aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Ascending_aorta] xref: Ascending:aorta xref: EHDAA2:0000147 xref: EHDAA:9828 xref: EMAPA:17014 xref: FMA:3736 xref: http://linkedlifedata.com/resource/umls/id/C0003956 xref: http://www.snomedbrowser.com/Codes/Details/181299009 xref: MA:0002570 xref: NCIT:C32150 xref: OpenCyc:Mx4rwVFqO5wpEbGdrcN5Y29ycA xref: UMLS:C0003956 {source="ncithesaurus:Ascending_Aorta"} is_a: UBERON:0001515 ! thoracic aorta relationship: contributes_to_morphology_of UBERON:0001515 ! thoracic aorta relationship: develops_from UBERON:0005338 {source="EHDAA2"} ! outflow tract aortic component relationship: has_developmental_contribution_from UBERON:0002061 ! truncus arteriosus relationship: has_developmental_contribution_from UBERON:0005432 ! aortic sac property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg [Term] id: UBERON:0001508 name: arch of aorta namespace: uberon def: "the convex portion of the aorta between the ascending and descending parts of the aorta; branches from it include the brachiocephalic trunk, the left common carotid artery, and the left subclavian artery; the brachiocephalic trunk further splits to form the right subclavian artery and the right common carotid artery" [ISBN:0-683-40008-8, MP:0004113] subset: pheno_slim subset: uberon_slim synonym: "aortic arch" RELATED [FMA:3768] synonym: "arcus aortae" EXACT LATIN [FMA:3768, FMA:TA] synonym: "thoracic aorta" RELATED [GAID:471] xref: BTO:0000157 xref: EFO:0002526 xref: EHDAA2:0000132 xref: EMAPA:17613 xref: FMA:3768 xref: GAID:471 xref: http://en.wikipedia.org/wiki/Arch_of_aorta xref: http://www.snomedbrowser.com/Codes/Details/181300001 xref: MA:0000475 xref: VHOG:0001196 is_a: UBERON:0001515 ! thoracic aorta relationship: contributes_to_morphology_of UBERON:0001515 ! thoracic aorta relationship: develops_from UBERON:0003121 {notes="left arch 4 in human", source="embryology.ch"} ! pharyngeal arch artery 4 relationship: has_developmental_contribution_from UBERON:0005432 ! aortic sac relationship: has_developmental_contribution_from UBERON:0005613 ! left dorsal aorta property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg property_value: IAO:0000232 "Do not confuse with aortic arch" xsd:string property_value: UBPROP:0000001 "The curving portion between the ascending aorta and the descending aorta, giving rise to the brachiocephalic trunk, the left common carotid artery, and the left subclavian artery. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001196", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/arch+of+aorta"} property_value: UBPROP:0000003 "The double systemic arch arches (left and right) present in amphibians and reptiles become reduced to a single systemic arch - the right in birds, the left in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001196", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.460 and p.461 Figure 12.20"} property_value: UBPROP:0000008 "birds have right aortic arch, mammals left." xsd:string [Term] id: UBERON:0001514 name: descending aorta namespace: uberon def: "The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries[GO]. The descending aorta is part of the aorta, the largest artery in the body. The descending aorta is the part of the aorta beginning at the aortic arch that runs down through the chest and abdomen. The descending aorta is divided into two portions, the thoracic and abdominal, in correspondence with the two great cavities of the trunk in which it is situated. Within the abdomen, the descending aorta branches into the two common iliac arteries which serve the legs. [WP,unvetted]." [GO:0035906, http://en.wikipedia.org/wiki/Descending_aorta] subset: pheno_slim subset: uberon_slim synonym: "aorta descendens" RELATED LATIN [http://en.wikipedia.org/wiki/Descending_aorta] synonym: "aorta descendens" RELATED [http://en.wikipedia.org/wiki/Descending_aorta] synonym: "pars descendens aortae" EXACT [FMA:3784] synonym: "pars descendens aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Descending_aorta] xref: Descending:aorta xref: EMAPA:18606 xref: FMA:3784 xref: http://linkedlifedata.com/resource/umls/id/C0011666 xref: http://www.snomedbrowser.com/Codes/Details/261399002 xref: MA:0002571 xref: NCIT:C32455 xref: OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA xref: UMLS:C0011666 {source="ncithesaurus:Descending_Aorta"} is_a: UBERON:0005800 {source="FMA"} ! section of aorta relationship: develops_from UBERON:0005805 {source="Wikipedia"} ! dorsal aorta relationship: has_developmental_contribution_from UBERON:0005613 ! left dorsal aorta relationship: has_developmental_contribution_from UBERON:0005622 ! right dorsal aorta property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg property_value: UBPROP:0000011 "results from fusion of left and right dorsal aortae" xsd:string [Term] id: UBERON:0001515 name: thoracic aorta namespace: uberon def: "the part of the aorta that extends from the origin at the heart to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest" [http://www.medterms.com, MP:0010468] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "aorta thoracalis" RELATED LATIN [http://en.wikipedia.org/wiki/Thoracic_aorta] synonym: "aorta thoracica" EXACT LATIN [FMA:3786, FMA:TA] synonym: "pars thoracica aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Thoracic_aorta] synonym: "thoracic part of aorta" EXACT [] xref: BTO:0000157 xref: EFO:0002525 xref: EMAPA:18603 xref: FMA:3786 xref: GAID:471 xref: galen:ThoracicAorta xref: http://linkedlifedata.com/resource/umls/id/C1522460 xref: http://www.snomedbrowser.com/Codes/Details/302510009 xref: MA:0002569 xref: MESH:D001013 xref: NCIT:C33766 xref: OpenCyc:Mx4rveb9TpwpEbGdrcN5Y29ycA xref: Thoracic:aorta xref: UMLS:C1522460 {source="ncithesaurus:Thoracic_Aorta"} is_a: UBERON:0005800 {source="FMA"} ! section of aorta relationship: contributes_to_morphology_of UBERON:0000947 ! aorta property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png [Term] id: UBERON:0001516 name: abdominal aorta namespace: uberon def: "Abdominal part of aorta: the distal part of the descending aorta, which is the continuation of the thoracic part and gives rise to the inferior phrenic, lumbar, median sacral, superior and inferior mesenteric, middle suprarenal, renal, and testicular or ovarian arteries, and celiac trunk[BTO]. The abdominal aorta is the largest artery in the abdominal cavity. As part of the aorta, it is a direct continuation of descending aorta(of the thorax). [WP,unvetted]." [BTO:0002976, http://en.wikipedia.org/wiki/Abdominal_aorta] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "abdominal part of aorta" EXACT [FMA:3789] synonym: "abdominal part of aorta" RELATED [BTO:0002976] synonym: "aorta abdominalis" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta] synonym: "aorta abdominalis" RELATED [BTO:0002976] synonym: "descending abdominal aorta" EXACT [FMA:3789] synonym: "pars abdominalis aortae" EXACT [FMA:3789] synonym: "pars abdominalis aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta] synonym: "pars abdominalis aortae" RELATED [BTO:0002976] xref: Abdominal:aorta xref: BTO:0002976 xref: EFO:0002524 xref: EMAPA:17856 xref: FMA:3789 xref: GAID:470 xref: galen:AbdominalAorta xref: http://linkedlifedata.com/resource/umls/id/C0003484 xref: http://www.snomedbrowser.com/Codes/Details/244231007 xref: MA:0000474 xref: MESH:D001012 xref: NCIT:C32038 xref: OpenCyc:Mx4rvYhWCZwpEbGdrcN5Y29ycA xref: UMLS:C0003484 {source="ncithesaurus:Abdominal_Aorta"} is_a: UBERON:0005800 ! section of aorta relationship: contributes_to_morphology_of UBERON:0001514 ! descending aorta relationship: part_of UBERON:0001514 {source="FMA"} ! descending aorta property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png property_value: IAO:0000116 "Many of the branches of the abdominal aorta in mammals may be branches of the dorsal aorta in other vertebrates" xsd:string [Term] id: UBERON:0001529 name: brachiocephalic artery namespace: uberon def: "the short first aortic arch branch and divides into the right subclavian artery and the right common carotid artery" [MGI:csmith, MP:0010663] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "brachiocephalic trunk" EXACT [MA:0001922] synonym: "innominate" BROAD [http://en.wikipedia.org/wiki/Brachiocephalic_artery] synonym: "innominate artery" EXACT [http://en.wikipedia.org/wiki/Brachiocephalic_artery] synonym: "truncus brachiocephalicus" EXACT LATIN [FMA:3932, FMA:TA] synonym: "truncus brachiocephalicus" RELATED LATIN [http://en.wikipedia.org/wiki/Brachiocephalic_artery] xref: Brachiocephalic:artery xref: EFO:0002550 xref: EHDAA2:0000835 xref: EMAPA:17615 xref: FMA:3932 xref: GAID:476 xref: galen:BrachioCephalicArtery xref: http://linkedlifedata.com/resource/umls/id/C0006094 xref: http://www.snomedbrowser.com/Codes/Details/244244002 xref: MA:0001922 xref: MESH:D016122 xref: NCIT:C32814 xref: OpenCyc:Mx4rv9mMTpwpEbGdrcN5Y29ycA xref: UMLS:C0006094 {source="ncithesaurus:Innominate_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: channels_from UBERON:0001508 ! arch of aorta relationship: part_of UBERON:0007204 ! brachiocephalic vasculature property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg [Term] id: UBERON:0001530 name: common carotid artery plus branches namespace: uberon def: "A bilaterally paired branched artery that originates from the aortic arches and divides into and includes as parts the internal and external carotid arteries[cjm]." [http://en.wikipedia.org/wiki/Common_carotid_artery] subset: pheno_slim subset: uberon_slim synonym: "a. carotis communis" RELATED LATIN [http://en.wikipedia.org/wiki/Common_carotid_artery] synonym: "carotid artery" BROAD [FMA:3939] synonym: "carotid artery system" EXACT [EHDAA2:0000217] synonym: "common carotid artery" EXACT INCONSISTENT [FMA:3939] synonym: "trunk of common carotid tree" EXACT [FMA:3939] xref: CALOHA:TS-0116 xref: EHDAA2:0000217 xref: EHDAA:7331 xref: EMAPA:17855 xref: FMA:3939 xref: GAID:479 xref: http://en.wikipedia.org/wiki/Common_carotid_artery xref: http://linkedlifedata.com/resource/umls/id/C0162859 xref: http://www.snomedbrowser.com/Codes/Details/362041005 xref: MA:0001926 xref: MESH:D017536 xref: NCIT:C32352 xref: UMLS:C0162859 {source="ncithesaurus:Common_Carotid_Artery"} xref: VHOG:0000272 is_a: UBERON:0004573 {source="FMA"} ! systemic artery relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! pharyngeal arch artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg property_value: IAO:0000116 "we follow the FMA and treat the artery as a tree-structure - here we include the internal and external as parts. For the part that excludes the branches, see 'trunk of common carotid artery'" xsd:string property_value: IAO:0000232 "This class represents the adult and developing structures'" xsd:string property_value: UBPROP:0000011 "in birds and reptiles, develops from arch III and parts of ventral and dorsal aortae" xsd:string [Term] id: UBERON:0001531 name: right common carotid artery plus branches namespace: uberon def: "The rightmost of the two common carotid arteries, originating from in the neck from the brachiocephalic trunk." [UBERON:cjm] subset: uberon_slim synonym: "right common carotid artery" EXACT [MA:0001928] synonym: "right common carotid artery" RELATED [FMA:3941] synonym: "trunk of right common carotid tree" EXACT [FMA:3941] xref: EMAPA:35749 xref: FMA:3941 xref: http://en.wikipedia.org/wiki/Right_common_carotid_artery xref: http://linkedlifedata.com/resource/umls/id/C0226086 xref: http://www.snomedbrowser.com/Codes/Details/362042003 xref: MA:0001928 xref: NCIT:C33473 xref: OpenCyc:Mx4rtW9-AqgEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA xref: UMLS:C0226086 {source="ncithesaurus:Right_Common_Carotid_Artery"} is_a: UBERON:0001530 {source="FMA"} ! common carotid artery plus branches property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg property_value: UBPROP:0000012 "placement of the MA class here is not strictly correct, as the MA class does not include the branches" xsd:string [Term] id: UBERON:0001532 name: internal carotid artery namespace: uberon def: "A terminal branch of the left or right common carotid artery which supplies oxygenated blood to the brain and eyes[MP]" [MGI:anna] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria carotis interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_carotid_artery] synonym: "cranial carotid artery" EXACT [ZFA:0005081] synonym: "ICA" RELATED ABBREVIATION [] synonym: "internal carotid" EXACT [AAO:0010219] xref: AAO:0010219 xref: AAO:0011054 xref: BTO:0004697 xref: EFO:0001952 xref: EHDAA2:0000873 xref: EHDAA:408 xref: EHDAA:6389 xref: EMAPA:16328 xref: FMA:3947 xref: GAID:481 xref: http://en.wikipedia.org/wiki/Internal_carotid_artery xref: http://linkedlifedata.com/resource/umls/id/C0007276 xref: http://www.snomedbrowser.com/Codes/Details/362045001 xref: MA:0001930 xref: MESH:D002343 xref: NCIT:C32836 xref: OpenCyc:Mx4rvYx8KZwpEbGdrcN5Y29ycA xref: TAO:0005081 xref: UMLS:C0007276 {source="ncithesaurus:Internal_Carotid_Artery"} xref: VHOG:0000267 xref: XAO:0000366 xref: ZFA:0005081 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0005396 {source="MA"} ! carotid artery segment relationship: branching_part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches relationship: develops_from UBERON:2001053 {source="cjm"} ! future internal carotid artery relationship: part_of UBERON:0001530 ! common carotid artery plus branches property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png property_value: UBPROP:0000001 "Each of two arteries starting at the bifurcation of the common carotid arteries through which blood circulates to many structures and organs in the head. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000267", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/Internal+carotid+artery"} property_value: UBPROP:0000001 "One of the major arteries of the head, it is the as the cranial continuation of the aortic arches and the dorsal aorta. It curves ventrally before resuming a dorsal course as it enters the head proper, and it lies ventral to the internal jugular vein. The internal carotid artery gives off palatine, ophthalmic, and cerebral branches by stage NF stage 41.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011054", ontology="AAO", source="http://www.ncbi.nlm.nih.gov/pubmed/12606281"} [Term] id: UBERON:0001533 name: subclavian artery namespace: uberon def: "One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta" [https://orcid.org/0000-0002-6601-2165, ISBN:0073040584] subset: pheno_slim subset: uberon_slim subset: unverified_taxonomic_grouping subset: vertebrate_core synonym: "arteria subclavia" EXACT LATIN [XAO:0000365] synonym: "arteria subclavia" RELATED LATIN [http://en.wikipedia.org/wiki/Subclavian_artery] synonym: "arterial tree of upper limb" EXACT [] synonym: "PA" RELATED ABBREVIATION [] synonym: "pectoral artery" EXACT [] synonym: "subclavian arterial tree" EXACT [] xref: AAO:0010232 xref: EHDAA2:0001933 xref: EHDAA:4357 xref: EMAPA:17617 xref: FMA:3951 xref: GAID:511 xref: http://linkedlifedata.com/resource/umls/id/C0038530 xref: http://www.snomedbrowser.com/Codes/Details/265790007 xref: MA:0002045 xref: MESH:D013348 xref: NCIT:C33643 xref: OpenCyc:Mx4rvp8u1JwpEbGdrcN5Y29ycA xref: Subclavian:artery xref: TAO:0005086 xref: UMLS:C0038530 {source="ncithesaurus:Subclavian_Artery"} xref: XAO:0000365 xref: ZFA:0005086 is_a: UBERON:0004573 ! systemic artery relationship: develops_from UBERON:0002457 {source="EHDAA2"} ! intersomitic artery relationship: develops_from UBERON:0005622 {source="EHDAA2"} ! right dorsal aorta property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg property_value: IAO:0000116 "Developmental relationships should be added (intersegmental artery and right dorsal aorta in EHDAA2, occipitovertebral artery in XAO)" xsd:string property_value: UBPROP:0000001 "Artery which supplies blood via branches to the various muscles of the shoulder region and to the forelimb.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010232", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib[WP]" xsd:string {source="Subclavian:artery"} property_value: UBPROP:0000001 "The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005086", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001534 name: right subclavian artery namespace: uberon def: "The subclavian artery that supplies the right pectoral appendage" [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "arteria subclavia dextra" EXACT LATIN [FMA:3953, FMA:TA] xref: EHDAA2:0004514 xref: EMAPA:37384 {source="MA:th"} xref: FMA:3953 xref: http://linkedlifedata.com/resource/umls/id/C0226261 xref: http://www.snomedbrowser.com/Codes/Details/244246000 xref: MA:0002047 xref: NCIT:C33490 xref: OpenCyc:Mx4rtW7hwqgEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA xref: Subclavian:artery xref: UMLS:C0226261 {source="ncithesaurus:Right_Subclavian_Artery"} is_a: UBERON:0001533 ! subclavian artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg property_value: UBPROP:0000008 "in humans, arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery" xsd:string property_value: UBPROP:0000011 "proximal part arises from right 4th aortic arch in humans" xsd:string [Term] id: UBERON:0001535 name: vertebral artery namespace: uberon def: "the first branch of the left and right subclavian arteries that merge to form the single midline basilar artery; branches of the vertebral arteries supply the musculature of the neck" [ISBN:0-683-40008-8, MP:0011513] comment: The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria vertebralis" RELATED LATIN [http://en.wikipedia.org/wiki/Vertebral_artery] synonym: "vertebral arteries" RELATED PLURAL [ZFA:0005033] xref: EHDAA2:0002192 xref: EHDAA:5328 xref: EMAPA:17314 xref: FMA:3956 xref: GAID:518 xref: http://linkedlifedata.com/resource/umls/id/C0042559 xref: http://www.snomedbrowser.com/Codes/Details/181323003 xref: MA:0002077 xref: MESH:D014711 xref: NCIT:C12819 xref: OpenCyc:Mx4rvg_ir5wpEbGdrcN5Y29ycA xref: TAO:0005033 xref: UMLS:C0042559 {source="ncithesaurus:Vertebral_Artery"} xref: Vertebral:artery xref: VHOG:0000263 xref: ZFA:0005033 is_a: UBERON:0002458 ! spinal artery relationship: branching_part_of UBERON:0001533 ! subclavian artery relationship: part_of UBERON:0001533 ! subclavian artery property_value: depicted:by Vertebral:artery.png [Term] id: UBERON:0001536 name: left common carotid artery plus branches namespace: uberon def: "The leftmost of the two common carotid arteries, originating from the aortic arch in the thorax." [UBERON:cjm] subset: uberon_slim synonym: "left common carotid artery" EXACT [MA:0001927] synonym: "left common carotid artery" RELATED [FMA:4058] synonym: "trunk of left common carotid tree" EXACT [FMA:4058] xref: EMAPA:35491 xref: FMA:4058 xref: http://en.wikipedia.org/wiki/Left_common_carotid_artery xref: http://linkedlifedata.com/resource/umls/id/C0226087 xref: http://www.snomedbrowser.com/Codes/Details/362043008 xref: MA:0001927 xref: NCIT:C32956 xref: OpenCyc:Mx4rdz4xcLVIEduAAAAOpmP6tw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA xref: UMLS:C0226087 {source="ncithesaurus:Left_Common_Carotid_Artery"} is_a: UBERON:0001530 {source="FMA"} ! common carotid artery plus branches property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg property_value: UBPROP:0000012 "placement of the MA class here is not strictly correct, as the MA class does not include the branches" xsd:string [Term] id: UBERON:0001537 name: anterior tibial artery namespace: uberon def: "The anterior tibial artery of the lower limb carries blood to the anterior compartment of the leg and dorsal surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the anterior tibial vein, along its course. It crosses the anterior aspect of the ankle joint, at which point it becomes the dorsalis pedis artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Anterior_tibial_artery] subset: uberon_slim synonym: "arteria tibialis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_tibial_artery] xref: EMAPA:37071 {source="MA:th"} xref: FMA:43894 xref: http://en.wikipedia.org/wiki/Anterior_tibial_artery xref: http://linkedlifedata.com/resource/umls/id/C0085816 xref: http://www.snomedbrowser.com/Codes/Details/181357006 xref: MA:0002574 xref: NCIT:C12825 xref: OpenCyc:Mx4rvaHcEZwpEbGdrcN5Y29ycA xref: UMLS:C0085816 {source="ncithesaurus:Anterior_Tibial_Artery"} is_a: UBERON:0007610 ! tibial artery disjoint_from: UBERON:0001538 {source="lexical"} ! posterior tibial artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/81/Gray1247.png [Term] id: UBERON:0001538 name: posterior tibial artery namespace: uberon def: "The posterior tibial artery of the lower limb carries blood to the posterior compartment of the leg and plantar surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the posterior tibial vein, along its course. [WP,unvetted]." [http://en.wikipedia.org/wiki/Posterior_tibial_artery] subset: uberon_slim synonym: "arteria tibialis posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_tibial_artery] xref: EMAPA:37110 {source="MA:th"} xref: FMA:43895 xref: http://en.wikipedia.org/wiki/Posterior_tibial_artery xref: http://linkedlifedata.com/resource/umls/id/C0086835 xref: http://www.snomedbrowser.com/Codes/Details/181358001 xref: MA:0002575 xref: NCIT:C12826 xref: OpenCyc:Mx4rwLSaQ5wpEbGdrcN5Y29ycA xref: UMLS:C0086835 {source="ncithesaurus:Posterior_Tibial_Artery"} is_a: UBERON:0007610 ! tibial artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/81/Gray1247.png [Term] id: UBERON:0001539 name: dorsalis pedis artery namespace: uberon def: "A blood vessel of the lower limb that carries oxygenated blood to the dorsal surface of the foot. It arises at the anterior aspect of the ankle joint and is a continuation of the anterior tibial artery. It terminates at the proximal part of the first intermetatarsal space, where it divides into two branches, the first dorsal metatarsal artery and the deep plantar artery. Along its course, it is accompanied by a deep vein, the dorsalis pedis vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsalis_pedis_artery] subset: uberon_slim synonym: "arteria dorsalis pedis" EXACT LATIN [FMA:43915, FMA:TA] synonym: "arteria dorsalis pedis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsalis_pedis_artery] synonym: "dorsal artery of foot" EXACT [http://en.wikipedia.org/wiki/Dorsalis_pedis_artery] xref: EMAPA:37077 {source="MA:th"} xref: FMA:43915 xref: galen:DorsalisPedisArtery xref: http://en.wikipedia.org/wiki/Dorsalis_pedis_artery xref: http://linkedlifedata.com/resource/umls/id/C0226492 xref: http://www.snomedbrowser.com/Codes/Details/181362007 xref: MA:0001942 xref: NCIT:C32478 xref: UMLS:C0226492 {source="ncithesaurus:Dorsalis_Pedis_Artery"} is_a: UBERON:0003516 ! hindlimb blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001537 ! anterior tibial artery relationship: part_of UBERON:0001537 ! anterior tibial artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png [Term] id: UBERON:0001540 name: peroneal artery namespace: uberon def: "An artery that supplies blood to the lateral compartment of the leg and is typically a branch of posterior tibial artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Peroneal_artery] synonym: "arteria fibularis" EXACT LATIN [FMA:43921, FMA:TA] synonym: "fibular artery" EXACT [] xref: EMAPA:37674 {source="MA:th"} xref: FMA:43921 xref: http://linkedlifedata.com/resource/umls/id/C0226476 xref: http://www.snomedbrowser.com/Codes/Details/181359009 xref: MA:0002018 xref: NCIT:C33314 xref: OpenCyc:Mx4rwSO_s5wpEbGdrcN5Y29ycA xref: Peroneal:artery xref: UMLS:C0226476 {source="ncithesaurus:Peroneal_Artery"} is_a: UBERON:0035292 ! branch of posterior tibial artery property_value: depicted:by Fibular:artery.png [Term] id: UBERON:0001541 name: medial plantar artery namespace: uberon def: "The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_plantar_artery] subset: uberon_slim synonym: "a. plantaris medialis" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_plantar_artery] xref: EMAPA:37101 {source="MA:th"} xref: FMA:43925 xref: http://en.wikipedia.org/wiki/Medial_plantar_artery xref: http://linkedlifedata.com/resource/umls/id/C0226479 xref: http://linkedlifedata.com/resource/umls/id/C1512881 xref: http://www.snomedbrowser.com/Codes/Details/181360004 xref: MA:0001997 xref: NCIT:C32860 xref: NCIT:C52968 xref: UMLS:C0226479 {source="ncithesaurus:Medial_Plantar_Artery"} is_a: UBERON:0003516 ! hindlimb blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001538 {source="FMA"} ! posterior tibial artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png [Term] id: UBERON:0001544 name: popliteal vein namespace: uberon def: "The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]." [http://en.wikipedia.org/wiki/Popliteal_vein] subset: uberon_slim synonym: "vena poplitea" RELATED LATIN [http://en.wikipedia.org/wiki/Popliteal_vein] xref: EMAPA:37181 {source="MA:th"} xref: FMA:44327 xref: GAID:537 xref: galen:PoplitealVein xref: http://linkedlifedata.com/resource/umls/id/C0032652 xref: http://www.snomedbrowser.com/Codes/Details/281065001 xref: MA:0002197 xref: MESH:D011152 xref: NCIT:C33339 xref: OpenCyc:Mx4rv8Ch-JwpEbGdrcN5Y29ycA xref: Popliteal:vein xref: UMLS:C0032652 {source="ncithesaurus:Popliteal_Vein"} is_a: UBERON:0001638 ! vein is_a: UBERON:0003516 ! hindlimb blood vessel relationship: part_of UBERON:0001361 ! femoral vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png [Term] id: UBERON:0001545 name: anterior tibial vein namespace: uberon def: "A vein of the lower limb that carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]." [http://en.wikipedia.org/wiki/Anterior_tibial_vein] subset: uberon_slim synonym: "venae tibiales anteriores" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_tibial_vein] xref: EMAPA:37135 {source="MA:th"} xref: FMA:44331 xref: galen:AnteriorTibialVein xref: http://en.wikipedia.org/wiki/Anterior_tibial_vein xref: http://linkedlifedata.com/resource/umls/id/C0226833 xref: http://www.snomedbrowser.com/Codes/Details/281066000 xref: MA:0002244 xref: NCIT:C32115 xref: OpenCyc:Mx4rvXYDl5wpEbGdrcN5Y29ycA xref: UMLS:C0226833 {source="ncithesaurus:Anterior_Tibial_Vein"} is_a: UBERON:0010370 {source="MA"} ! tibial vein disjoint_from: UBERON:0001546 {source="lexical"} ! posterior tibial vein relationship: part_of UBERON:0001544 ! popliteal vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein property_value: depicted:by Gray440:color.png [Term] id: UBERON:0001546 name: posterior tibial vein namespace: uberon def: "A vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]." [http://en.wikipedia.org/wiki/Posterior_tibial_vein] subset: uberon_slim synonym: "venae tibiales posteriores" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_tibial_vein] xref: EMAPA:37183 {source="MA:th"} xref: FMA:44332 xref: galen:PosteriorTibialVein xref: http://en.wikipedia.org/wiki/Posterior_tibial_vein xref: http://linkedlifedata.com/resource/umls/id/C0226832 xref: http://www.snomedbrowser.com/Codes/Details/281067009 xref: MA:0002245 xref: NCIT:C33386 xref: OpenCyc:Mx4rwA9GD5wpEbGdrcN5Y29ycA xref: UMLS:C0226832 {source="ncithesaurus:Posterior_Tibial_Vein"} is_a: UBERON:0010370 {source="MA"} ! tibial vein relationship: part_of UBERON:0001544 ! popliteal vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray583.png [Term] id: UBERON:0001547 name: small saphenous vein namespace: uberon def: "The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]." [http://en.wikipedia.org/wiki/Small_saphenous_vein] subset: uberon_slim synonym: "lesser saphenous vein" EXACT [] synonym: "short saphenous vein" EXACT [] synonym: "vena saphena parva" EXACT LATIN [http://en.wikipedia.org/wiki/Small_saphenous_vein] xref: BTO:0003272 xref: EMAPA:37187 {source="MA:th"} xref: FMA:44333 xref: galen:LesserSaphenousVein xref: http://en.wikipedia.org/wiki/Small_saphenous_vein xref: http://linkedlifedata.com/resource/umls/id/C0226827 xref: http://www.snomedbrowser.com/Codes/Details/181404009 xref: MA:0002217 xref: NCIT:C33546 xref: UMLS:C0226827 {source="ncithesaurus:Short_Saphenous_Vein"} is_a: UBERON:0007318 ! saphenous vein relationship: part_of UBERON:0001544 ! popliteal vein relationship: tributary_of UBERON:0001544 {source="FMA"} ! popliteal vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/62/Gray582.png [Term] id: UBERON:0001548 name: lateral marginal vein namespace: uberon def: "a continuation of the Dorsal venous arch of the foot and is the origin of the short saphenous vein" [http://en.wikipedia.org/wiki/Lateral_marginal_vein] synonym: "lateral marginal vein of foot" EXACT [] synonym: "vena marginalis lateralis" EXACT [] synonym: "vena marginalis lateralis pedis" EXACT LATIN [FMA:44359, FMA:TA] xref: EMAPA:37161 {source="MA:th"} xref: FMA:44359 xref: http://en.wikipedia.org/wiki/Lateral_marginal_vein xref: MA:0002160 is_a: UBERON:0004261 ! lower leg blood vessel is_a: UBERON:0035550 ! superficial vein disjoint_from: UBERON:0001550 {source="lexical"} ! medial marginal vein relationship: part_of UBERON:0001547 ! small saphenous vein relationship: tributary_of UBERON:0001547 {source="FMA/obol"} ! small saphenous vein [Term] id: UBERON:0001549 name: dorsal metatarsal vein namespace: uberon def: "The dorsal metatarsal veins are veins which drain the metatarsus of the foot. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsal_metatarsal_veins] synonym: "metatarsal vein" EXACT [] synonym: "venae metatarsales dorsales" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_metatarsal_veins] xref: EMAPA:37143 {source="MA:th"} xref: FMA:44377 xref: http://en.wikipedia.org/wiki/Dorsal_metatarsal_veins xref: http://linkedlifedata.com/resource/umls/id/C0835053 xref: MA:0002105 xref: NCIT:C52689 xref: UMLS:C0835053 {source="ncithesaurus:Dorsal_Metatarsal_Vein"} is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0008783 ! dorsal venous arch relationship: tributary_of UBERON:0008783 ! dorsal venous arch [Term] id: UBERON:0001550 name: medial marginal vein namespace: uberon def: "a continuation of the Dorsal venous arch of the foot and is the origin of the long saphenous vein" [http://en.wikipedia.org/wiki/Medial_marginal_vein] synonym: "medial marginal vein of foot" EXACT [] synonym: "vena marginalis medialis" EXACT [] synonym: "vena marginalis medialis pedis" EXACT LATIN [FMA:44420, FMA:TA] xref: EMAPA:37170 {source="MA:th"} xref: FMA:44420 xref: http://en.wikipedia.org/wiki/Medial_marginal_vein xref: MA:0002171 is_a: UBERON:0004261 ! lower leg blood vessel is_a: UBERON:0035550 ! superficial vein relationship: part_of UBERON:0001363 ! great saphenous vein relationship: tributary_of UBERON:0001363 {source="FMA/obol"} ! great saphenous vein [Term] id: UBERON:0001551 name: vein of hindlimb zeugopod namespace: uberon synonym: "sural vein" EXACT [FMA:44561] xref: EMAPA:37231 {source="MA:th"} xref: FMA:44561 xref: MA:0002231 is_a: UBERON:0001638 ! vein is_a: UBERON:0004261 ! lower leg blood vessel relationship: part_of UBERON:0001544 ! popliteal vein relationship: tributary_of UBERON:0001544 {source="FMA"} ! popliteal vein property_value: UBPROP:0000013 "The term 'sural veins' is not sufficient to appropriately designate the complex venous system of the calf. This should be designated as soleal veins (venae solealis), the veins of the soleus muscle and gastrocnemius veins (venae gastrocnemii)" xsd:string {source="echodoppler:11.php"} [Term] id: UBERON:0001552 name: kidney arcuate artery namespace: uberon def: "One of the curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries." [http://en.wikipedia.org/wiki/Arcuate_artery_of_the_foot, MP:0011315] subset: pheno_slim subset: uberon_slim synonym: "arcuate artery" BROAD [MA:0002583] synonym: "renal arcuate artery" EXACT [] xref: EMAPA:28215 xref: FMA:70497 xref: http://en.wikipedia.org/wiki/Arcuate_arteries_of_the_kidney xref: MA:0002583 is_a: UBERON:0001637 ! artery is_a: UBERON:0003644 ! kidney arterial blood vessel relationship: branching_part_of UBERON:0009885 ! interlobar artery relationship: part_of UBERON:0009885 ! interlobar artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png [Term] id: UBERON:0001553 name: medial tarsal artery namespace: uberon def: "The medial tarsal arteries are two or three small branches which ramify on the medial border of the foot and join the medial malleolar net-work." [http://en.wikipedia.org/wiki/Medial_tarsal_arteries] xref: EMAPA:37102 {source="MA:th"} xref: FMA:44598 xref: http://en.wikipedia.org/wiki/Medial_tarsal_arteries xref: http://linkedlifedata.com/resource/umls/id/C0226495 xref: http://www.snomedbrowser.com/Codes/Details/67925000 xref: MA:0001998 xref: NCIT:C52969 xref: UMLS:C0226495 {source="ncithesaurus:Medial_Tarsal_Artery"} is_a: UBERON:0001637 ! artery is_a: UBERON:0003521 ! pes blood vessel [Term] id: UBERON:0001561 name: subcostal artery namespace: uberon def: "An artery that runs along the bottom of the lowest rib. They constitute the lowest pair of branches derived from the thoracic aorta, and are in series with the intercostal arteries. Each passes along the lower border of the twelfth rib behind the kidney and in front of the Quadratus lumborum muscle, and is accompanied by the twelfth thoracic nerve. It then pierces the posterior aponeurosis of the Transversus abdominis, and, passing forward between this muscle and the Obliquus internus, anastomoses with the superior epigastric, lower intercostal, and lumbar arteries. Each subcostal artery gives off a posterior branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Subcostal_artery] subset: uberon_slim xref: EMAPA:19097 xref: FMA:4613 xref: http://linkedlifedata.com/resource/umls/id/C0226293 xref: http://www.snomedbrowser.com/Codes/Details/244243008 xref: MA:0002048 xref: NCIT:C53000 xref: Subcostal:artery xref: UMLS:C0226293 {source="ncithesaurus:Subcostal_Artery"} is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0001584 name: left subclavian artery namespace: uberon def: "The subclavian artery that supplies the left pectoral appendage" [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "arteria subclavia (sinistra)" EXACT LATIN [FMA:4694, FMA:TA] xref: EMAPA:37100 {source="MA:th"} xref: FMA:4694 xref: http://linkedlifedata.com/resource/umls/id/C0226262 xref: http://www.snomedbrowser.com/Codes/Details/244245001 xref: MA:0002046 xref: NCIT:C32972 xref: OpenCyc:Mx4rtW7hw6gEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA xref: Subclavian:artery xref: UMLS:C0226262 {source="ncithesaurus:Left_Subclavian_Artery"} is_a: UBERON:0001533 ! subclavian artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg property_value: UBPROP:0000008 "in humans, branches off the arch of aorta" xsd:string property_value: UBPROP:0000011 "arises from left intersegmental 6th artery in the region of the 6th -7th cervical segment in humans" xsd:string [Term] id: UBERON:0001585 name: anterior vena cava namespace: uberon def: "A vein that carries deoxygenated blood from the upper half of the body into the right atrium of the heart." [http://en.wikipedia.org/wiki/Superior_vena_cava, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "cranial vena cava" RELATED [VHOG:0001195] synonym: "precava" RELATED [] synonym: "superior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "superior vena cava" EXACT [FMA:4720] synonym: "vena cava superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava] synonym: "vena cava superior" RELATED [BTO:0002683] synonym: "vena maxima" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava] xref: BTO:0002683 xref: EHDAA2:0001962 xref: EHDAA:8726 xref: EMAPA:18417 xref: FMA:4720 xref: GAID:549 xref: galen:SuperiorVenaCava xref: http://en.wikipedia.org/wiki/Superior_vena_cava xref: http://linkedlifedata.com/resource/umls/id/C0042459 xref: http://www.snomedbrowser.com/Codes/Details/181368006 xref: MA:0000481 xref: MESH:D014683 xref: NCIT:C12816 xref: UMLS:C0042459 {source="ncithesaurus:Superior_Vena_Cava"} xref: VHOG:0001195 is_a: UBERON:0004087 ! vena cava property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b4/Venenwinkel.png property_value: UBPROP:0000003 "Phylogenetic modifications within this basic pattern of arteries and veins are largely correlated with functional changes. In the transition from water to land, gills gave way to lungs, accompanied by the establishment of a pulmonary circulation. In some fishes and certainly in tetrapods, the cardinal veins become less involved in blood return. Instead, the composite, prominent postcava (posterior vena cava) arose to drain the posterior part of the body and the precava (anterior vena cava) developed to drain the anterior part of the body.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001195", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.454-455"} property_value: UBPROP:0000008 "The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). In the mouse, The right pulmonary vein passes dorsal to the right superior vena cava, the left pulmonary dorsal to the left superior vena cava (Biology of the Laboratory Mouse, Green)." xsd:string [Term] id: UBERON:0001586 name: internal jugular vein namespace: uberon def: "One of two jugular veins that collect the blood from the brain, the superficial parts of the face, and the neck. [WP,unvetted]." [http://en.wikipedia.org/wiki/Internal_jugular_vein] subset: uberon_slim synonym: "internal jugular" EXACT [EHDAA2:0000877] synonym: "internal jugular venous tree" EXACT [] synonym: "vena jugularis interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_jugular_vein] xref: AAO:0010236 xref: EHDAA2:0000877 xref: EHDAA:5407 xref: EMAPA:17620 xref: FMA:4724 xref: galen:InternalJugularVein xref: http://en.wikipedia.org/wiki/Internal_jugular_vein xref: http://linkedlifedata.com/resource/umls/id/C0226550 xref: http://www.snomedbrowser.com/Codes/Details/181372005 xref: MA:0002157 xref: NCIT:C32849 xref: OpenCyc:Mx4rvqdb95wpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0000878 xref: UMLS:C0226550 {source="ncithesaurus:Internal_Jugular_Vein"} xref: XAO:0000382 is_a: UBERON:0004711 ! jugular vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray562.png property_value: UBPROP:0000001 "Vein which receives many veins draining the palate, brain, and the orbital, nasal, and auditory regions.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010236", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001587 name: subclavian vein namespace: uberon def: "The subclavian vein is a paired large vein, one on either side of the body. Their diameter is approximately that of the smallest finger." [http://en.wikipedia.org/wiki/Subclavian_vein] subset: uberon_slim synonym: "subclavian venous tree" EXACT [] synonym: "vena subclavia" EXACT LATIN [http://en.wikipedia.org/wiki/Subclavian_vein] xref: AAO:0010510 xref: EHDAA2:0001934 xref: EHDAA:4455 xref: EMAPA:17621 xref: FMA:4725 xref: GAID:546 xref: galen:SubclavianVein xref: http://linkedlifedata.com/resource/umls/id/C0038532 xref: http://www.snomedbrowser.com/Codes/Details/181388005 xref: MA:0002221 xref: MESH:D013350 xref: NCIT:C12794 xref: OpenCyc:Mx4rvvvtMZwpEbGdrcN5Y29ycA xref: Subclavian:vein xref: UMLS:C0038532 {source="ncithesaurus:Subclavian_Vein"} is_a: UBERON:0001638 ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png property_value: UBPROP:0000001 "Vein which collects blood from the forelimb via the brachial veins and from the muscles and skin of the trunk via the anterior epigastric and lateral veins.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010510", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001588 name: vertebral vein namespace: uberon def: "The vertebral vein is formed in the suboccipital triangle, from numerous small tributaries which spring from the internal vertebral venous plexuses and issue from the vertebral canal above the posterior arch of the atlas. They unite with small veins from the deep muscles at the upper part of the back of the neck, and form a vessel which enters the foramen in the transverse process of the atlas, and descends, forming a dense plexus around the vertebral artery, in the canal formed by the foramina transversaria of the cervical vertebrae. This plexus ends in a single trunk, which emerges from the foramen transversarium of the sixth cervical vertebra, and opens at the root of the neck into the back part of the innominate vein near its origin, its mouth being guarded by a pair of valves. On the right side, it crosses the first part of the subclavian artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vertebral_vein] subset: uberon_slim synonym: "vena vertebralis" RELATED LATIN [http://en.wikipedia.org/wiki/Vertebral_vein] xref: AAO:0010509 xref: EMAPA:36271 xref: FMA:4727 xref: http://linkedlifedata.com/resource/umls/id/C0226560 xref: http://www.snomedbrowser.com/Codes/Details/303961000 xref: MA:0002262 xref: NCIT:C53145 xref: OpenCyc:Mx4rwKt8xJwpEbGdrcN5Y29ycA xref: UMLS:C0226560 {source="ncithesaurus:Vertebral_Vein"} xref: Vertebral:vein is_a: UBERON:0001638 ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray563.png property_value: UBPROP:0000001 "Vein which collects blood from the muscles of the neck and drains into the internal jugular.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010509", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001589 name: internal thoracic vein namespace: uberon def: "A vessel that drains the chest wall and breats and arises from the superior epigastric vein, accompanies the internal thoracic artery along its course and terminates in the brachiocephalic vein.." [http://en.wikipedia.org/wiki/Internal_thoracic_vein] subset: uberon_slim synonym: "internal mammary vein" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Internal_thoracic_vein] synonym: "vena thoracica interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_thoracic_vein] xref: EMAPA:18641 xref: FMA:4729 xref: http://en.wikipedia.org/wiki/Internal_thoracic_vein xref: http://linkedlifedata.com/resource/umls/id/C0226633 xref: http://www.snomedbrowser.com/Codes/Details/281056008 xref: MA:0002237 xref: NCIT:C52698 xref: UMLS:C0226633 {source="ncithesaurus:Internal_Thoracic_Vein"} is_a: UBERON:0005194 {source="MA"} ! thoracic vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png [Term] id: UBERON:0001590 name: pericardiacophrenic vein namespace: uberon def: "Vena comitans of the pericardiacophrenic arteries." [http://en.wikipedia.org/wiki/Pericardiacophrenic_veins] synonym: "venae pericardiacophrenicae" RELATED LATIN [http://en.wikipedia.org/wiki/Pericardiacophrenic_veins] xref: EMAPA:37178 {source="MA:th"} xref: FMA:4742 xref: http://linkedlifedata.com/resource/umls/id/C0501112 xref: http://www.snomedbrowser.com/Codes/Details/361626007 xref: MA:0002187 xref: NCIT:C53061 xref: Pericardiacophrenic:veins xref: UMLS:C0501112 {source="ncithesaurus:Pericardiacophrenic_Vein"} is_a: UBERON:0001638 ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png [Term] id: UBERON:0001591 name: thymic vein namespace: uberon def: "A vein that drains blood from the thymus." [http://orcid.org/0000-0002-6601-2165] synonym: "thymic tributary of brachiocephalic vein" EXACT [] synonym: "vena thymica" EXACT LATIN [http://en.wikipedia.org/wiki/Thymic_veins] synonym: "venae thymicae" RELATED LATIN [http://en.wikipedia.org/wiki/Thymic_veins] xref: EMAPA:36325 xref: FMA:4747 xref: http://linkedlifedata.com/resource/umls/id/C0226698 xref: http://www.snomedbrowser.com/Codes/Details/303432009 xref: MA:0002246 xref: NCIT:C53143 xref: Thymic:veins xref: UMLS:C0226698 {source="ncithesaurus:Thymic_Vein"} is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0003711 ! brachiocephalic vein relationship: tributary_of UBERON:0003711 ! brachiocephalic vein [Term] id: UBERON:0001592 name: bronchial vein namespace: uberon def: "The bronchial veins are small vessels that return blood from the larger bronchi and structures at the roots of the lungs. The right side drains into the azygos vein, while the left side drains into the left superior intercostal vein or the accessory hemiazygos vein. The bronchial veins are counterparts to the bronchial arteries. The veins, however, do not return all of the blood supplied by the arteries; much of the blood that is carried in the bronchial arteries is returned to the heart via the pulmonary veins. [WP,unvetted]." [http://en.wikipedia.org/wiki/Bronchial_veins] subset: uberon_slim synonym: "bronchial venous tree" EXACT [] xref: Bronchial:veins xref: EMAPA:36284 xref: FMA:4749 xref: http://linkedlifedata.com/resource/umls/id/C0226650 xref: http://www.snomedbrowser.com/Codes/Details/198293000 xref: MA:0002088 xref: NCIT:C53031 xref: UMLS:C0226650 {source="ncithesaurus:Bronchial_Vein"} is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001593 name: venous plexus namespace: uberon def: "A congregation of multiple veins." [http://en.wikipedia.org/wiki/Venous_plexus] subset: uberon_slim synonym: "plexus venosus" RELATED LATIN [http://en.wikipedia.org/wiki/Venous_plexus] synonym: "rete venosum" RELATED LATIN [http://en.wikipedia.org/wiki/Venous_plexus] synonym: "venous network" EXACT [] xref: EMAPA:36327 xref: FMA:4767 xref: http://www.snomedbrowser.com/Codes/Details/322151008 xref: MA:0000069 xref: Venous:plexus is_a: UBERON:0004537 ! blood vasculature is_a: UBERON:0005629 ! vascular plexus intersection_of: UBERON:0005629 ! vascular plexus intersection_of: composed_primarily_of UBERON:0001638 ! vein relationship: composed_primarily_of UBERON:0001638 ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png [Term] id: UBERON:0001594 name: azygos vein namespace: uberon def: "An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]." [http://en.wikipedia.org/wiki/Azygos_vein, MP:0011569] subset: pheno_slim subset: uberon_slim synonym: "azygos venous tree" EXACT [] synonym: "vena azygos" RELATED LATIN [http://en.wikipedia.org/wiki/Azygos_vein] xref: Azygos:vein xref: EMAPA:18250 xref: FMA:4838 xref: GAID:528 xref: galen:AzygosVein xref: http://linkedlifedata.com/resource/umls/id/C0004526 xref: MA:0002085 xref: MESH:D001401 xref: NCIT:C53029 xref: UMLS:C0004526 {source="ncithesaurus:Azygos_Vein"} is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0008268 {source="ISBN:0443065837"} ! right supracardinal vein property_value: depicted:by Azygos:vein.png property_value: IAO:0000116 "check development relationships in different species" xsd:string [Term] id: UBERON:0001610 name: lingual artery namespace: uberon def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [http://en.wikipedia.org/wiki/Lingual_artery] subset: uberon_slim synonym: "arteria lingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Lingual_artery] synonym: "lingual branch of external carotid artery" EXACT [] xref: AAO:0010492 xref: EMAPA:36324 xref: FMA:49526 xref: http://linkedlifedata.com/resource/umls/id/C0226104 xref: http://www.snomedbrowser.com/Codes/Details/181327002 xref: Lingual:artery xref: MA:0001992 xref: NCIT:C52961 xref: OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA xref: UMLS:C0226104 {source="ncithesaurus:Lingual_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0035398 ! branch of external carotid artery property_value: depicted:by Lingual:artery.PNG property_value: UBPROP:0000001 "Part of the external carotid which supplies blood to the tongue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010492", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000002 "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010492", ontology="AAO"} [Term] id: UBERON:0001611 name: sublingual artery namespace: uberon def: "A branch of the lingual artery that supplies the sublingual gland." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria sublingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Sublingual_artery] synonym: "sublingual branch of lingual artery" EXACT [] xref: AAO:0010491 xref: EMAPA:37115 {source="MA:th"} xref: FMA:49543 xref: http://linkedlifedata.com/resource/umls/id/C0226106 xref: http://www.snomedbrowser.com/Codes/Details/368706006 xref: MA:0002049 xref: NCIT:C53002 xref: Sublingual:artery xref: UMLS:C0226106 {source="ncithesaurus:Sublingual_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001610 {source="FMA"} ! lingual artery relationship: part_of UBERON:0001610 ! lingual artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png property_value: IAO:0000116 "Check grouping with amphibian structure of the same name" xsd:string property_value: UBPROP:0000001 "Part of the external carotid which supplies blood to the tip of the snout where branches go to the tongue and the m. geniohyoideus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010491", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000002 "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010491", ontology="AAO"} [Term] id: UBERON:0001612 name: facial artery namespace: uberon def: "A branch of the external carotid artery that supplies structures of the face. [WP,unvetted]." [http://en.wikipedia.org/wiki/Facial_artery] subset: uberon_slim synonym: "arteria maxillaris externa" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_artery] synonym: "external maxillary artery" RELATED [] xref: EMAPA:19213 xref: Facial:artery xref: FMA:49549 xref: http://linkedlifedata.com/resource/umls/id/C0226109 xref: http://www.snomedbrowser.com/Codes/Details/181328007 xref: MA:0001950 xref: NCIT:C32578 xref: OpenCyc:Mx4rwCt95ZwpEbGdrcN5Y29ycA xref: UMLS:C0226109 {source="ncithesaurus:Facial_Artery"} is_a: UBERON:0035398 ! branch of external carotid artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png [Term] id: UBERON:0001613 name: occipital artery namespace: uberon def: "The occipital artery arises opposite the facial artery, its path is below the posterior belly of digastric to the occipital region. This artery supplies blood to the back of the scalp and sterno-mastoid muscles. Other muscles it supplies are deep muscles in the back and neck. [WP,unvetted]." [http://en.wikipedia.org/wiki/Occipital_artery] subset: uberon_slim synonym: "arteria occipitalis" RELATED LATIN [http://en.wikipedia.org/wiki/Occipital_artery] xref: EMAPA:37672 {source="MA:th"} xref: FMA:49586 xref: http://linkedlifedata.com/resource/umls/id/C0226117 xref: http://www.snomedbrowser.com/Codes/Details/244219005 xref: MA:0002009 xref: NCIT:C33194 xref: Occipital:artery xref: OpenCyc:Mx4rwC1IFJwpEbGdrcN5Y29ycA xref: UMLS:C0226117 {source="ncithesaurus:Occipital_Artery"} is_a: UBERON:0035398 ! branch of external carotid artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png [Term] id: UBERON:0001614 name: superficial temporal artery namespace: uberon def: "A major artery of the head that arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superficial_temporal_artery] subset: uberon_slim synonym: "arteria temporalis superficialis" RELATED LATIN [http://en.wikipedia.org/wiki/Superficial_temporal_artery] xref: BTO:0003747 xref: EMAPA:37118 {source="MA:th"} xref: FMA:49650 xref: http://en.wikipedia.org/wiki/Superficial_temporal_artery xref: http://www.snomedbrowser.com/Codes/Details/181325005 xref: MA:0002062 xref: OpenCyc:Mx4rv33WkZwpEbGdrcN5Y29ycA is_a: UBERON:0001632 ! temporal artery is_a: UBERON:0035398 ! branch of external carotid artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray1200.png [Term] id: UBERON:0001615 name: transverse facial artery namespace: uberon def: "The transverse facial artery is an artery that branches from the superficial temporal artery and runs across the face. [WP,unvetted]." [http://en.wikipedia.org/wiki/Transverse_facial_artery] subset: uberon_slim synonym: "arteria transversa faciei" RELATED LATIN [http://en.wikipedia.org/wiki/Transverse_facial_artery] xref: EMAPA:37130 {source="MA:th"} xref: FMA:49657 xref: http://en.wikipedia.org/wiki/Transverse_facial_artery xref: http://linkedlifedata.com/resource/umls/id/C0226132 xref: http://www.snomedbrowser.com/Codes/Details/146551008 xref: MA:0002068 xref: NCIT:C53025 xref: UMLS:C0226132 {source="ncithesaurus:Transverse_Facial_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0013648 ! masseteric artery relationship: branching_part_of UBERON:0001614 ! superficial temporal artery relationship: part_of UBERON:0001614 ! superficial temporal artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/35/Gray515.png [Term] id: UBERON:0001616 name: maxillary artery namespace: uberon def: "An artery that supplies deep structures of the face. It comes just out behind the neck of the mandible. [WP,unvetted]." [http://en.wikipedia.org/wiki/Maxillary_artery] subset: uberon_slim synonym: "arteria maxillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Maxillary_artery] synonym: "internal maxillary artery" RELATED [] xref: EHDAA2:0001069 xref: EHDAA:7357 xref: EMAPA:17311 xref: FMA:49675 xref: GAID:498 xref: http://linkedlifedata.com/resource/umls/id/C0024949 xref: http://www.snomedbrowser.com/Codes/Details/181326006 xref: MA:0001919 xref: Maxillary:artery xref: MESH:D008438 xref: NCIT:C34205 xref: OpenCyc:Mx4rwDDJ45wpEbGdrcN5Y29ycA xref: UMLS:C0024949 {source="ncithesaurus:Maxillary_Artery"} is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: directly_develops_from UBERON:0003118 ! pharyngeal arch artery 1 relationship: develops_from UBERON:0003118 ! pharyngeal arch artery 1 relationship: directly_develops_from UBERON:0003118 ! pharyngeal arch artery 1 property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/39/Gray510.png property_value: UBPROP:0000011 "...1st pair undergoes partial regression, the remnants of which becomes part of the maxillary arteries" xsd:string {source="Vascular:Devt.html"} [Term] id: UBERON:0001617 name: mental artery namespace: uberon def: "The mental branch of inferior alveolar artery escapes with the nerve at the mental foramen, supplies the chin, and anastomoses with the submental and inferior labial arteries. [WP,unvetted]." [http://en.wikipedia.org/wiki/Mental_artery] subset: uberon_slim synonym: "mental branch of inferior alveolar artery" EXACT [] synonym: "ramus mentalis (arteria alveolaris inferior)" EXACT LATIN [FMA:49701, FMA:TA] xref: EMAPA:37105 {source="MA:th"} xref: FMA:49701 xref: http://en.wikipedia.org/wiki/Mental_part_of_inferior_alveolar_artery xref: http://linkedlifedata.com/resource/umls/id/C0226144 xref: http://www.snomedbrowser.com/Codes/Details/147561008 xref: MA:0002002 xref: NCIT:C52973 xref: UMLS:C0226144 {source="ncithesaurus:Mental_Artery"} is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: branching_part_of UBERON:0014693 ! inferior alveolar artery relationship: part_of UBERON:0014693 ! inferior alveolar artery [Term] id: UBERON:0001618 name: buccal artery namespace: uberon def: "The buccal artery (buccinator artery) is small and runs obliquely forward, between the Pterygoideus internus and the insertion of the Temporalis, to the outer surface of the Buccinator, to which it is distributed, anastomosing with branches of the external maxillary and with the infraorbital. [WP,unvetted]." [http://en.wikipedia.org/wiki/Buccal_artery] subset: uberon_slim synonym: "arteria buccalis" RELATED LATIN [http://en.wikipedia.org/wiki/Buccal_artery] synonym: "arteria buccinatoria" RELATED LATIN [http://en.wikipedia.org/wiki/Buccal_artery] xref: Buccal:artery xref: EMAPA:37073 {source="MA:th"} xref: FMA:49754 xref: http://linkedlifedata.com/resource/umls/id/C0226151 xref: http://www.snomedbrowser.com/Codes/Details/148066005 xref: MA:0001924 xref: NCIT:C52847 xref: UMLS:C0226151 {source="ncithesaurus:Buccal_Artery"} is_a: UBERON:0001637 ! artery relationship: branching_part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png [Term] id: UBERON:0001619 name: ophthalmic artery namespace: uberon def: "The ophthalmic artery is a branch of the internal carotid artery which supplies branches to supply the eye and other structures in the orbit. It enters the orbit together with the Optic nerve through the Optic foramen/canal. [WP,modified]." [http://en.wikipedia.org/wiki/Ophthalmic_artery] subset: uberon_slim synonym: "arteria ophthalmica" RELATED LATIN [http://en.wikipedia.org/wiki/Ophthalmic_artery] synonym: "opthalmic artery" RELATED [http://en.wikipedia.org/wiki/Ophthalmic_artery] xref: AAO:0010497 xref: EHDAA2:0001300 xref: EHDAA:7363 xref: EMAPA:17007 xref: FMA:49868 xref: GAID:503 xref: http://linkedlifedata.com/resource/umls/id/C0029078 xref: http://www.snomedbrowser.com/Codes/Details/181310005 xref: MA:0002011 xref: MESH:D009880 xref: NCIT:C33216 xref: OpenCyc:Mx4rvcCxpJwpEbGdrcN5Y29ycA xref: Ophthalmic:artery xref: UMLS:C0029078 {source="ncithesaurus:Opthalmic_Artery"} xref: XAO:0000368 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png property_value: UBPROP:0000001 "Part of internal carotid which carries blood via branches to the eye, the eye muscles, and eyelids.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010497", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000002 "relationship loss: part_of internal carotid (AAO:0010219)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010497", ontology="AAO"} [Term] id: UBERON:0001620 name: central retinal artery namespace: uberon def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [http://en.wikipedia.org/wiki/Central_retinal_artery] subset: uberon_slim synonym: "arteria centralis retinae" RELATED [http://en.wikipedia.org/wiki/Central_retinal_artery] synonym: "arteria centralis retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Central_retinal_artery] synonym: "central artery of retina" EXACT [] synonym: "central artery of the retina" RELATED [http://en.wikipedia.org/wiki/Central_retinal_artery] synonym: "retinal artery" EXACT [] synonym: "Zinn's artery" EXACT [] xref: EMAPA:37113 {source="MA:th"} xref: FMA:49879 xref: GAID:508 xref: http://en.wikipedia.org/wiki/Central_retinal_artery xref: http://linkedlifedata.com/resource/umls/id/C0035301 xref: http://www.snomedbrowser.com/Codes/Details/277771001 xref: MA:0002038 xref: MESH:D012161 xref: NCIT:C52997 xref: UMLS:C0035301 {source="ncithesaurus:Retinal_Artery"} is_a: UBERON:0003501 ! retina blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001619 {source="FMA"} ! ophthalmic artery relationship: develops_from UBERON:0002270 ! hyaloid artery relationship: develops_from_part_of UBERON:0002270 {notes="proximal portion", source="ISBN:0781772214"} ! hyaloid artery relationship: part_of UBERON:0001619 ! ophthalmic artery property_value: depicted:by Gray514:updated.png [Term] id: UBERON:0001621 name: coronary artery namespace: uberon def: "An artery that supplies the myocardium." [http://en.wikipedia.org/wiki/Coronary_circulation#Coronary_anatomy, http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "coronary arterial tree" EXACT [] synonym: "coronary vessel" RELATED [ZFA:0005812] xref: BTO:0000290 xref: CALOHA:TS-0176 xref: Coronary_anatomy xref: EFO:0002551 xref: EMAPA:19160 xref: EV:0100383 xref: FMA:49893 xref: galen:CoronaryArtery xref: http://linkedlifedata.com/resource/umls/id/C0205042 xref: http://www.snomedbrowser.com/Codes/Details/181294004 xref: MA:0002453 xref: NCIT:C12843 xref: OpenCyc:Mx4rvoL56ZwpEbGdrcN5Y29ycA xref: UMLS:C0205042 {source="ncithesaurus:Coronary_Artery"} xref: VHOG:0001557 xref: ZFA:0005812 is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0004573 ! systemic artery relationship: supplies UBERON:0002349 ! myocardium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png [Term] id: UBERON:0001622 name: lacrimal artery namespace: uberon def: "The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lacrimal_artery] subset: uberon_slim synonym: "a. lacrimalis" RELATED LATIN [http://en.wikipedia.org/wiki/Lacrimal_artery] xref: EMAPA:37094 {source="MA:th"} xref: FMA:49927 xref: http://linkedlifedata.com/resource/umls/id/C0226171 xref: http://www.snomedbrowser.com/Codes/Details/369324002 xref: Lacrimal:artery xref: MA:0001988 xref: NCIT:C52948 xref: UMLS:C0226171 {source="ncithesaurus:Lacrimal_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001619 {source="FMA"} ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png [Term] id: UBERON:0001623 name: dorsal nasal artery namespace: uberon def: "The dorsal nasal artery (nasal artery) is an artery of the head. It is one of the two terminal branches of the ophthalmic artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsal_nasal_artery] subset: uberon_slim synonym: "arteria dorsalis nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_nasal_artery] synonym: "dorsal nasal branch of ophthalmic artery" EXACT [FMA:50000] synonym: "external nasal artery" EXACT [FMA:50000] xref: EMAPA:35292 xref: FMA:50000 xref: http://en.wikipedia.org/wiki/Dorsal_nasal_artery xref: http://linkedlifedata.com/resource/umls/id/C0226194 xref: http://www.snomedbrowser.com/Codes/Details/369333000 xref: MA:0001945 xref: NCIT:C52983 xref: UMLS:C0226194 {source="ncithesaurus:Dorsal_Nasal_Artery"} is_a: UBERON:0015156 {source="FMA"} ! terminal branch of ophthalmic artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/35/Gray515.png [Term] id: UBERON:0001624 name: anterior cerebral artery namespace: uberon def: "One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis." [http://en.wikipedia.org/wiki/Anterior_cerebral_artery] subset: uberon_slim synonym: "arteria cerebri anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_cerebral_artery] xref: EHDAA2:0000128 xref: EHDAA:5296 xref: EMAPA:17854 xref: FMA:50028 xref: GAID:485 xref: http://en.wikipedia.org/wiki/Anterior_cerebral_artery xref: http://linkedlifedata.com/resource/umls/id/C0149561 xref: http://www.snomedbrowser.com/Codes/Details/181309000 xref: MA:0001915 xref: MESH:D020771 xref: NCIT:C12829 xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA xref: UMLS:C0149561 {source="ncithesaurus:Anterior_Cerebral_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004449 ! cerebral artery disjoint_from: UBERON:0001636 {source="lexical"} ! posterior cerebral artery relationship: branching_part_of UBERON:0001532 {source="FMA", source="WP"} ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery property_value: depicted:by https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg [Term] id: UBERON:0001625 name: right coronary artery namespace: uberon def: "Coronary artery which runs along the right side of the heart and predominantly supplies the mycocardium of the right side of the heart[Wikipedia,modified]" [http://en.wikipedia.org/wiki/Right_coronary_artery, http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria coronaria dextra" RELATED LATIN [http://en.wikipedia.org/wiki/Right_coronary_artery] synonym: "right coronary arterial tree" RELATED [] xref: EHDAA2:0004505 xref: EMAPA:36532 xref: FMA:50039 xref: http://en.wikipedia.org/wiki/Right_coronary_artery xref: http://linkedlifedata.com/resource/umls/id/C1261316 xref: http://www.snomedbrowser.com/Codes/Details/362037006 xref: MA:0002455 xref: NCIT:C12875 xref: UMLS:C1261316 {source="ncithesaurus:Right_Coronary_Artery"} is_a: UBERON:0001621 ! coronary artery relationship: supplies UBERON:0000948 ! heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png [Term] id: UBERON:0001626 name: left coronary artery namespace: uberon def: "Coronary artery which runs along the left side of the heart and predominantly supplies the mycocardium of the left side of the heart[Wikipedia,modified]" [http://en.wikipedia.org/wiki/Left_coronary_artery, http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria coronaria sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Left_coronary_artery] synonym: "left coronary arterial tree" RELATED [] xref: EHDAA2:0004504 xref: EMAPA:36531 xref: FMA:50040 xref: http://en.wikipedia.org/wiki/Left_coronary_artery xref: http://linkedlifedata.com/resource/umls/id/C1261082 xref: http://www.snomedbrowser.com/Codes/Details/362034004 xref: MA:0002454 xref: NCIT:C12872 xref: UMLS:C1261082 {source="ncithesaurus:Left_Coronary_Artery"} is_a: UBERON:0001621 ! coronary artery relationship: supplies UBERON:0000948 ! heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png [Term] id: UBERON:0001627 name: middle cerebral artery namespace: uberon def: "The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Middle_cerebral_artery] subset: uberon_slim synonym: "arteria cerebri media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_cerebral_artery] synonym: "Sylvian artery" EXACT [] xref: BTO:0005206 xref: EHDAA2:0001179 xref: EHDAA:5298 xref: EMAPA:18239 xref: FMA:50079 xref: GAID:487 xref: http://en.wikipedia.org/wiki/Middle_cerebral_artery xref: http://linkedlifedata.com/resource/umls/id/C0149566 xref: http://www.snomedbrowser.com/Codes/Details/181312002 xref: MA:0001935 xref: MESH:D020768 xref: NCIT:C12830 xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA xref: UMLS:C0149566 {source="ncithesaurus:Middle_Cerebral_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004449 ! cerebral artery relationship: branching_part_of UBERON:0001532 {source="FMA", source="WP"} ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery property_value: depicted:by https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg [Term] id: UBERON:0001628 name: posterior communicating artery namespace: uberon def: "One of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery." [http://en.wikipedia.org/wiki/Posterior_communicating_artery] subset: uberon_slim subset: vertebrate_core synonym: "arteria cerebri communicans posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_communicating_artery] synonym: "caudal communicating segment" EXACT [ZFA:0005001] synonym: "PCA" RELATED [] synonym: "PCS" RELATED [] synonym: "posterior communicating segment of the basilar artery" EXACT [ZFA:0005001] xref: EHDAA2:0004518 xref: EHDAA:3352 xref: EMAPA:18600 xref: FMA:50084 xref: http://en.wikipedia.org/wiki/Posterior_communicating_artery xref: http://linkedlifedata.com/resource/umls/id/C0149559 xref: http://www.snomedbrowser.com/Codes/Details/181314001 xref: MA:0002023 xref: NCIT:C33357 xref: OpenCyc:Mx4rwDDlqpwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0001487 xref: TAO:0005001 xref: UMLS:C0149559 {source="ncithesaurus:Posterior_Communicating_Artery"} xref: ZFA:0005001 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0006347 ! communicating artery intersection_of: UBERON:0006347 ! communicating artery intersection_of: branching_part_of UBERON:0001532 ! internal carotid artery intersection_of: part_of UBERON:0003709 ! circle of Willis disjoint_from: UBERON:0006764 {source="lexical"} ! anterior communicating artery relationship: branching_part_of UBERON:0001532 {source="FMA", source="ZFA"} ! internal carotid artery relationship: in_lateral_side_of UBERON:0003709 {source="FMA-abduced-lr"} ! circle of Willis relationship: part_of UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0003709 ! circle of Willis property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg property_value: UBPROP:0000001 "An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005001", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "todo - verify ZFA link: An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery" xsd:string [Term] id: UBERON:0001629 name: carotid body namespace: uberon def: "A small epithelioid structure consisting of a small cluster of chemoreceptive and supporting cells located near the bifurcation of the common carotid artery that serves as a chemoreceptive organ that senses the pH, carbon dioxide, and oxygen concentrations in the blood and plays a crucial role in their homeostatic control." [MP:0003438] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "carotid glomus" EXACT [http://en.wikipedia.org/wiki/Carotid_body] synonym: "glomus caroticum" EXACT LATIN [http://en.wikipedia.org/wiki/Carotid_body] xref: BTO:0000204 xref: Carotid:body xref: EMAPA:19211 xref: FMA:50095 xref: GAID:813 xref: http://linkedlifedata.com/resource/umls/id/C0007277 xref: http://www.snomedbrowser.com/Codes/Details/362586000 xref: MA:0002463 xref: MESH:A08.800.550.700.120.600.150 xref: NCIT:C66852 xref: UMLS:C0007277 {source="ncithesaurus:Carotid_Body"} relationship: part_of UBERON:0001530 ! common carotid artery plus branches property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray1186.png [Term] id: UBERON:0001631 name: thoracic duct namespace: uberon def: "A major lymphatic vessel that drains lymph from the lower body, left appendage, and left thorax into the junction of the left jugular and subclavian veins." [http://en.wikipedia.org/wiki/Thoracic_duct] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ductus thoracicus" RELATED LATIN [http://en.wikipedia.org/wiki/Thoracic_duct] synonym: "trunk of thoracic duct tree" EXACT [] xref: EHDAA2:0004501 xref: EMAPA:19310 xref: FMA:5031 xref: GAID:1290 xref: http://linkedlifedata.com/resource/umls/id/C0039979 xref: http://www.snomedbrowser.com/Codes/Details/362600004 xref: MA:0002801 xref: MESH:A15.382.520.869 xref: NCIT:C33768 xref: TAO:0005110 xref: Thoracic:duct xref: UMLS:C0039979 {source="ncithesaurus:Thoracic_Duct"} xref: ZFA:0005110 is_a: UBERON:0001473 ! lymphatic vessel relationship: develops_from UBERON:0002065 {source="TAO"} ! posterior cardinal vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/75/Gray599.png property_value: IAO:0000116 "placement of the ZFA class here is dubious" xsd:string property_value: UBPROP:0000001 "Lymphatic trunk that connects all tributaries of the thoracic duct tree to the trunk of the left brachiocephalic vein." xsd:string {source="FMA:5031"} property_value: UBPROP:0000001 "The thoracic duct is the first perfused lymphatic, located between the dorsal aorta and posterior cardinal vein." xsd:string {source="ZFA:0005110"} [Term] id: UBERON:0001632 name: temporal artery namespace: uberon subset: grouping_class subset: uberon_slim xref: EMAPA:37127 {source="MA:th"} xref: FMA:50438 xref: GAID:489 xref: http://linkedlifedata.com/resource/umls/id/C0039482 xref: MA:0002061 xref: MESH:D013699 xref: NCIT:C33741 xref: Temporal:artery xref: UMLS:C0039482 {source="ncithesaurus:Temporal_Artery"} is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray1200.png property_value: IAO:0000116 "This class currently groups a variety of different structures" xsd:string [Term] id: UBERON:0001633 name: basilar artery namespace: uberon def: "A major artery that supplues the hindbrain and runs along the ventral keel of the hindbrain." [BGEE:ann] subset: pheno_slim subset: uberon_slim subset: unverified_taxonomic_grouping subset: vertebrate_core synonym: "BA" RELATED [] xref: Basilar:artery xref: EHDAA2:0000163 xref: EHDAA:5285 xref: EMAPA:17307 xref: FMA:50542 xref: GAID:474 xref: http://linkedlifedata.com/resource/umls/id/C0004811 xref: http://www.snomedbrowser.com/Codes/Details/244215004 xref: MA:0001920 xref: MESH:D001488 xref: NCIT:C12676 xref: OpenCyc:Mx4rwJTtcZwpEbGdrcN5Y29ycA xref: TAO:0005002 xref: UMLS:C0004811 {source="ncithesaurus:Basilar_Artery"} xref: VHOG:0000237 xref: ZFA:0005002 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0035307 ! branch of vertebral artery relationship: develops_from UBERON:0001535 {source="EHDAA2"} ! vertebral artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg property_value: UBPROP:0000001 "Artery that runs along the ventral keel of the hindbrain. It lies between the primordial hindbrain channels(PHBC). It irrigates the hindbrain and is connected, through the hindbrain, to the PHBC by the central arteries." xsd:string {source="ZFA:0005002"} property_value: UBPROP:0000001 "The unpaired artery that is formed by the union of the two vertebral arteries, runs forward within the skull just under the pons, divides into the two posterior cerebral arteries, and supplies the pons, cerebellum, posterior part of the cerebrum, and the inner ear[MP]." xsd:string {source="MP:0013186"} property_value: UBPROP:0000003 "The major artery supplying the hindbrain, the basilar artery, runs along the ventral keel of the hindbrain in all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000237", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1242/dev.058776 Fujita M, Cha YR, Pham VN, Sakurai A, Roman BL, Gutkind JS, Weinstein BM, Assembly and patterning of the vascular network of the vertebrate hindbrain. Development (2011)"} [Term] id: UBERON:0001634 name: mesencephalic artery namespace: uberon def: "The major artery of the midbrain, which crosses the midbrain medially to meet its partner the mesencephalic vein." [http://www.ncbi.nlm.nih.gov/pubmed/12606281, XAO:0004173] synonym: "MsA" EXACT ABBREVIATION [ZFA:0001068] xref: FMA:50570 xref: TAO:0001068 xref: XAO:0004173 xref: ZFA:0001068 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:2001062 {source="ZFA"} ! presumptive mesencephalic artery property_value: IAO:0000116 "review this term, check taxon scope" xsd:string property_value: UBPROP:0000001 "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001068", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Develops from the proximal portion of the primitive mesencephalic artery[ZFA:0001068, ZFIN:ZDB-PUB-010205-5]." xsd:string {source="ZFA:0001068, ZFIN:ZDB-PUB-010205-5"} property_value: UBPROP:0000002 "relationship loss: develops_from primitive mesencephalic artery (TAO:0001062)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001068", ontology="TAO"} [Term] id: UBERON:0001635 name: superior cerebellar artery namespace: uberon def: "The superior cerebellar artery (SCA) arises near the termination of the basilar artery. It passes lateralward, immediately below the oculomotor nerve, which separates it from the posterior cerebral artery, winds around the cerebral peduncle, close to the trochlear nerve, and, arriving at the upper surface of the cerebellum, divides into branches which ramify in the pia mater and anastomose with those of the inferior cerebellar arteries. Several branches are given to the pineal body, the anterior medullary velum, and the tela chorioidea of the third ventricle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_cerebellar_artery] subset: uberon_slim synonym: "arteria superior cerebelli" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_cerebellar_artery] xref: EHDAA2:0000681 xref: EMAPA:19309 xref: FMA:50573 xref: http://en.wikipedia.org/wiki/Superior_cerebellar_artery xref: http://linkedlifedata.com/resource/umls/id/C0149575 xref: http://www.snomedbrowser.com/Codes/Details/244214000 xref: MA:0001934 xref: NCIT:C33669 xref: UMLS:C0149575 {source="ncithesaurus:Superior_Cerebellar_Artery"} is_a: UBERON:0003472 ! cerebellar artery is_a: UBERON:0035489 ! branch of basilar artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg [Term] id: UBERON:0001636 name: posterior cerebral artery namespace: uberon def: "The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]." [http://en.wikipedia.org/wiki/Posterior_cerebral_artery] subset: uberon_slim synonym: "arteria cerebri posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_cerebral_artery] xref: EHDAA2:0000659 xref: EMAPA:17861 xref: FMA:50583 xref: GAID:488 xref: http://en.wikipedia.org/wiki/Posterior_cerebral_artery xref: http://linkedlifedata.com/resource/umls/id/C0149576 xref: http://www.snomedbrowser.com/Codes/Details/181313007 xref: MA:0002022 xref: MESH:D020769 xref: NCIT:C12831 xref: OpenCyc:Mx4rwO4qIJwpEbGdrcN5Y29ycA xref: UMLS:C0149576 {source="ncithesaurus:Posterior_Cerebral_Artery"} is_a: UBERON:0004449 ! cerebral artery is_a: UBERON:0035489 ! branch of basilar artery relationship: in_lateral_side_of UBERON:0001633 {source="FMA-abduced-lr"} ! basilar artery property_value: depicted:by https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg [Term] id: UBERON:0001637 name: artery namespace: uberon def: "An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arterial subtree" EXACT [] synonym: "arterial system" RELATED [] synonym: "arterial tree organ part" EXACT [] synonym: "arterial vessel" RELATED [] synonym: "arteries" EXACT PLURAL [TAO:0000005] xref: AAO:0010211 xref: AEO:0000208 xref: BTO:0000573 xref: CALOHA:TS-0054 xref: EFO:0000814 xref: EHDAA2:0000143 xref: EHDAA2:0003253 xref: EMAPA:35147 xref: EV:0100026 xref: FMA:50720 xref: GAID:468 xref: galen:Artery xref: http://en.wikipedia.org/wiki/Artery xref: http://linkedlifedata.com/resource/umls/id/C0003842 xref: http://www.snomedbrowser.com/Codes/Details/362877004 xref: MA:0000064 xref: MAT:0000034 xref: MESH:D001158 xref: MIAA:0000034 xref: NCIT:C12372 xref: OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA xref: TAO:0000005 xref: UMLS:C0003842 {source="ncithesaurus:Artery"} xref: VHOG:0001251 xref: XAO:0000114 xref: ZFA:0000005 is_a: UBERON:0003509 ! arterial blood vessel relationship: channels_from UBERON:0000948 ! heart property_value: IAO:0000116 "Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme." xsd:string property_value: UBPROP:0000001 "Part of the circulatory system composed of blood vessels which carry oxygenated blood away from the heart to the rest of the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010211", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001251", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2006)"} property_value: UBPROP:0000007 "arterial" xsd:string property_value: UBPROP:0000202 FMA:63812 [Term] id: UBERON:0001638 name: vein namespace: uberon def: "Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [http://en.wikipedia.org/wiki/Vein] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "vascular element" RELATED [EMAPA:th] synonym: "vena" RELATED LATIN [http://en.wikipedia.org/wiki/Vein] synonym: "venae" RELATED PLURAL [VHOG:0001743] synonym: "venous subtree" BROAD [] synonym: "venous tree organ part" EXACT [] synonym: "venous vessel" BROAD [] xref: AAO:0010212 xref: AEO:0000209 xref: BTO:0000234 xref: CALOHA:TS-1108 xref: EFO:0000816 xref: EHDAA2:0003254 xref: EMAPA:35906 xref: EV:0100031 xref: FMA:50723 xref: GAID:492 xref: galen:Vein xref: http://en.wikipedia.org/wiki/Vein xref: http://linkedlifedata.com/resource/umls/id/C0042449 xref: http://www.snomedbrowser.com/Codes/Details/181367001 xref: MA:0000067 xref: MAT:0000037 xref: MESH:D014680 xref: MIAA:0000037 xref: NCIT:C12814 xref: OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA xref: TAO:0000082 xref: UMLS:C0042449 {source="ncithesaurus:Vein"} xref: VHOG:0001743 xref: XAO:0000115 xref: ZFA:0000082 is_a: UBERON:0003920 ! venous blood vessel intersection_of: UBERON:0003920 ! venous blood vessel intersection_of: channel_for UBERON:0013756 ! venous blood relationship: channel_for UBERON:0013756 ! venous blood relationship: channels_from UBERON:0001982 ! capillary property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg property_value: IAO:0000116 "TODO - check with MA - vein vs venous blood vessel" xsd:string property_value: UBPROP:0000001 "Part of the circulatory system composed of blood vessels which carry blood from other organs, tissues, and cells to the heart.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010212", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001743", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2006)"} property_value: UBPROP:0000007 "venous" xsd:string property_value: UBPROP:0000202 FMA:63814 [Term] id: UBERON:0001639 name: hepatic portal vein namespace: uberon def: "A portal vein that transports nutrients from the digestive tract to the liver[Kardong]." [http://en.wikipedia.org/wiki/Hepatic_portal_vein, http://sourceforge.net/tracker/?func=detail&aid=3091300&group_id=76834&atid=1205376, ISBN:0073040584] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "hepatic portal tree" EXACT [] synonym: "HPV" RELATED [] synonym: "liver portal vein" EXACT [OBOL:automatic] synonym: "portal vein" RELATED INCONSISTENT [] synonym: "portal vein of liver" EXACT [OBOL:automatic] synonym: "primary hepatic portal vein" RELATED [ZFA:0005090] synonym: "primary hepatic portal veins" RELATED [] synonym: "vena portae hepatis" RELATED LATIN [http://en.wikipedia.org/wiki/Hepatic_portal_vein] xref: AAO:0010214 xref: FMA:50735 xref: http://en.wikipedia.org/wiki/Hepatic_portal_vein xref: MA:0002132 xref: TAO:0005090 xref: VHOG:0000642 xref: ZFA:0005090 is_a: UBERON:0002017 {source="MA"} ! portal vein relationship: part_of UBERON:0010194 ! hepatic portal system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png property_value: UBPROP:0000003 "Adults of all vertebrates lose the vitelline veins and establish a single large hepatic portal vein (...) by the selective retention of parts of the left and right subintestinals and of several anastomoses that occur between them within and just posterior to the liver.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000642", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.265"} property_value: UBPROP:0000008 "In humans A vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]" xsd:string [Term] id: UBERON:0001640 name: celiac artery namespace: uberon def: "The first major branch of the abdominal aorta." [http://en.wikipedia.org/wiki/Celiac_artery] comment: dorsal aorta in Kardong subset: pheno_slim subset: uberon_slim synonym: "arteria coeliaca" RELATED LATIN [http://en.wikipedia.org/wiki/Celiac_artery] synonym: "arteria cœliaca" RELATED LATIN [http://en.wikipedia.org/wiki/Celiac_artery] synonym: "celiac tree" EXACT [] synonym: "celiac trunk" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] synonym: "coeliac artery" EXACT [http://en.wikipedia.org/wiki/Celiac_artery] synonym: "coeliac axis" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] synonym: "coeliac trunck" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] synonym: "coeliac trunk" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] synonym: "truncus coeliacus" RELATED LATIN [http://en.wikipedia.org/wiki/Celiac_artery] synonym: "truncus coeliacus" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] synonym: "truncus cœliacus" RELATED LATIN [http://en.wikipedia.org/wiki/Celiac_artery] xref: Celiac:artery xref: EHDAA2:0004519 xref: EMAPA:35202 xref: FMA:50737 xref: GAID:483 xref: http://linkedlifedata.com/resource/umls/id/C0007569 xref: http://www.snomedbrowser.com/Codes/Details/181340007 xref: MA:0001931 xref: MESH:D002445 xref: NCIT:C52846 xref: UMLS:C0007569 {source="ncithesaurus:Coeliac_Artery"} is_a: UBERON:0012254 ! abdominal aorta artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png [Term] id: UBERON:0001641 name: transverse sinus namespace: uberon def: "one of the dural venous sinuses and drains the superior sagittal sinus the occipital sinus and the straight sinus, and empties into the sigmoid sinus which in turn reaches the jugular bulb." [http://radiopaedia.org/articles/transverse-sinus] subset: uberon_slim synonym: "groove for right and left transverse sinuses" RELATED [http://en.wikipedia.org/wiki/Transverse_sinuses] synonym: "lateral sinus" RELATED [FMA:50763] synonym: "sinus transversus" RELATED [http://en.wikipedia.org/wiki/Transverse_sinuses] synonym: "sinus transversus durae matris" EXACT LATIN [http://en.wikipedia.org/wiki/Transverse_sinuses] synonym: "transverse sinus" RELATED [http://en.wikipedia.org/wiki/Transverse_sinuses] synonym: "transverse sinus vein" RELATED [http://en.wikipedia.org/wiki/Transverse_sinuses] xref: EMAPA:18637 xref: FMA:50763 xref: http://www.snomedbrowser.com/Codes/Details/279262004 xref: MA:0001868 xref: ncithesaurus:Transverse_Sinus xref: OpenCyc:Mx4rwDb62ZwpEbGdrcN5Y29ycA xref: Transverse:sinuses is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0017635 ! paired venous dural sinus intersection_of: UBERON:0017635 ! paired venous dural sinus intersection_of: tributary_of UBERON:0005475 ! sigmoid sinus relationship: part_of UBERON:0005475 ! sigmoid sinus relationship: tributary_of UBERON:0005475 ! sigmoid sinus property_value: depicted:by Gray488:blue.gif property_value: IAO:0000116 "TODO - check subclasses" xsd:string [Term] id: UBERON:0001642 name: superior sagittal sinus namespace: uberon def: "The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_sagittal_sinus] subset: uberon_slim synonym: "sinus sagittalis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_sagittal_sinus] xref: EMAPA:18636 xref: FMA:50767 xref: http://en.wikipedia.org/wiki/Superior_sagittal_sinus xref: http://linkedlifedata.com/resource/umls/id/C0226859 xref: http://www.snomedbrowser.com/Codes/Details/362075006 xref: MA:0001867 xref: NCIT:C12515 xref: OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA xref: UMLS:C0226859 {source="ncithesaurus:Superior_Sagittal_Sinus"} is_a: UBERON:0015704 ! sagittal sinus relationship: develops_from UBERON:0009968 {source="cjm"} ! primitive superior sagittal sinus property_value: depicted:by Gray488:blue.gif [Term] id: UBERON:0001651 name: right pulmonary artery namespace: uberon def: "The pulmonary artery that supplies the right lung." [UBERON:cjm] subset: uberon_slim synonym: "arteria pulmonalis dextra" RELATED LATIN [http://en.wikipedia.org/wiki/Right_pulmonary_artery] synonym: "right main pulmonary artery" EXACT [] synonym: "right pulmonary arterial tree" EXACT [] xref: EMAPA:37378 {source="MA:th"} xref: FMA:50872 xref: galen:RightPulmonaryArtery xref: http://en.wikipedia.org/wiki/Right_pulmonary_artery xref: http://linkedlifedata.com/resource/umls/id/C0923924 xref: http://www.snomedbrowser.com/Codes/Details/244235003 xref: MA:0002500 xref: NCIT:C33489 xref: UMLS:C0923924 {source="ncithesaurus:Right_Pulmonary_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by Alveoli:diagram.png property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png property_value: IAO:0000116 "TODO - add class 'pulmonary artery tree organ'" xsd:string [Term] id: UBERON:0001652 name: left pulmonary artery namespace: uberon def: "The pulmonary artery that supplies the left lung." [UBERON:cjm] subset: uberon_slim synonym: "arteria pulmonalis sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Left_pulmonary_artery] synonym: "left main pulmonary artery" EXACT [] synonym: "left pulmonary arterial tree" EXACT [] xref: EMAPA:37097 {source="MA:th"} xref: FMA:50873 xref: galen:LeftPulmonaryArtery xref: http://en.wikipedia.org/wiki/Left_pulmonary_artery xref: http://linkedlifedata.com/resource/umls/id/C0923925 xref: http://www.snomedbrowser.com/Codes/Details/244234004 xref: MA:0002032 xref: NCIT:C32971 xref: UMLS:C0923925 {source="ncithesaurus:Left_Pulmonary_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by Alveoli:diagram.png property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png property_value: IAO:0000116 "TODO - add class 'pulmonary artery tree organ'" xsd:string [Term] id: UBERON:0001653 name: facial vein namespace: uberon def: "The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Facial_vein] subset: uberon_slim synonym: "anterior facial vein" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Facial_vein] synonym: "face vein" EXACT [OBOL:automatic] synonym: "vein of face" EXACT [OBOL:automatic] synonym: "vena facialis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_vein] xref: AAO:0010513 xref: EMAPA:19220 xref: Facial:vein xref: FMA:50874 xref: http://linkedlifedata.com/resource/umls/id/C0226532 xref: http://www.snomedbrowser.com/Codes/Details/181374006 xref: MA:0002115 xref: NCIT:C32579 xref: OpenCyc:Mx4rvziz3JwpEbGdrcN5Y29ycA xref: UMLS:C0226532 {source="ncithesaurus:Facial_Vein"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001586 ! internal jugular vein relationship: tributary_of UBERON:0001586 {source="FMA"} ! internal jugular vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png property_value: UBPROP:0000001 "Vein which collects blood from muscles of the head and drains into the external jugular vein.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010513", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000012 "MA and NCITA also has 'anterior facial vein'" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001654 name: supraorbital vein namespace: uberon def: "The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]." [http://en.wikipedia.org/wiki/Supra-orbital_vein] subset: uberon_slim synonym: "supra-orbital vein" EXACT [FMA:50904] xref: EMAPA:37195 {source="MA:th"} xref: FMA:50904 xref: http://linkedlifedata.com/resource/umls/id/C0226535 xref: http://www.snomedbrowser.com/Codes/Details/152006005 xref: MA:0002228 xref: NCIT:C33707 xref: Supraorbital:vein xref: UMLS:C0226535 {source="ncithesaurus:Supra-orbital_Vein"} is_a: UBERON:0014768 ! superior palpebral vein relationship: tributary_of UBERON:0001653 {source="FMA"} ! facial vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png [Term] id: UBERON:0001655 name: submental vein namespace: uberon def: "A vein in the chin that is connected to the sublingual and anterior jugular veins and drains into the facial vein." [ncithesaurus:Submental_Vein] xref: EMAPA:37188 {source="MA:th"} xref: FMA:50925 xref: http://linkedlifedata.com/resource/umls/id/C0226541 xref: http://www.snomedbrowser.com/Codes/Details/152309009 xref: MA:0002223 xref: NCIT:C53128 xref: UMLS:C0226541 {source="ncithesaurus:Submental_Vein"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001653 ! facial vein relationship: tributary_of UBERON:0001653 {source="FMA/obol"} ! facial vein [Term] id: UBERON:0001656 name: retromandibular vein namespace: uberon def: "The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Retromandibular_vein] subset: uberon_slim synonym: "posterior facial vein" EXACT [] synonym: "vena facialis posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Retromandibular_vein] synonym: "vena retromandibularis" RELATED LATIN [http://en.wikipedia.org/wiki/Retromandibular_vein] xref: EMAPA:37182 {source="MA:th"} xref: FMA:50928 xref: http://linkedlifedata.com/resource/umls/id/C0226520 xref: http://www.snomedbrowser.com/Codes/Details/151299003 xref: MA:0002117 xref: NCIT:C33746 xref: OpenCyc:Mx4rv0bn95wpEbGdrcN5Y29ycA xref: Retromandibular:vein xref: UMLS:C0226520 {source="ncithesaurus:Temporo-maxillary_Vein"} is_a: UBERON:0001653 ! facial vein disjoint_from: UBERON:0035675 {source="lexical"} ! anterior facial vein relationship: part_of UBERON:0001101 ! external jugular vein relationship: tributary_of UBERON:0001101 {source="FMA"} ! external jugular vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png [Term] id: UBERON:0001657 name: superficial temporal vein namespace: uberon def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superficial_temporal_vein] subset: uberon_slim synonym: "venae temporales superficiales" RELATED LATIN [http://en.wikipedia.org/wiki/Superficial_temporal_vein] xref: BTO:0003748 xref: EMAPA:19315 xref: FMA:50932 xref: http://en.wikipedia.org/wiki/Superficial_temporal_vein xref: http://linkedlifedata.com/resource/umls/id/C0226521 xref: http://www.snomedbrowser.com/Codes/Details/150087005 xref: MA:0002242 xref: NCIT:C52700 xref: OpenCyc:Mx4rvmANWZwpEbGdrcN5Y29ycA xref: UMLS:C0226521 {source="ncithesaurus:Superficial_Temporal_Vein"} is_a: UBERON:0001671 ! temporal vein is_a: UBERON:0003502 ! neck blood vessel relationship: part_of UBERON:0001656 ! retromandibular vein relationship: tributary_of UBERON:0001656 {source="FMA", source="Wikipedia"} ! retromandibular vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png [Term] id: UBERON:0001658 name: middle temporal vein namespace: uberon def: "A temporal vein that arises near the lateral angle of the eye; joins the superficial temporal veins to form the retromandibular vein." [http://medical-dictionary.thefreedictionary.com/middle+temporal+vein] xref: EMAPA:37176 {source="MA:th"} xref: FMA:50935 xref: http://www.snomedbrowser.com/Codes/Details/151400007 xref: MA:0002241 is_a: UBERON:0001671 ! temporal vein is_a: UBERON:0003502 ! neck blood vessel relationship: part_of UBERON:0001656 ! retromandibular vein relationship: tributary_of UBERON:0001656 {source="FMA", source="TFD"} ! retromandibular vein [Term] id: UBERON:0001659 name: transverse facial vein namespace: uberon def: "a tributary of the superficial temporal or retromandibular veins, anastomosing with the facial vein." [http://medical-dictionary.thefreedictionary.com/transverse+facial+vein] subset: uberon_slim xref: EMAPA:37200 {source="MA:th"} xref: FMA:50938 xref: http://www.snomedbrowser.com/Codes/Details/151501009 xref: MA:0002247 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein intersection_of: UBERON:0001638 ! vein intersection_of: anastomoses_with UBERON:0001653 ! facial vein intersection_of: tributary_of UBERON:0001656 ! retromandibular vein relationship: anastomoses_with UBERON:0001653 ! facial vein relationship: part_of UBERON:0001656 ! retromandibular vein relationship: tributary_of UBERON:0001656 ! retromandibular vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png [Term] id: UBERON:0001660 name: maxillary vein namespace: uberon def: "A vein that consists of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Maxillary_vein] subset: uberon_slim xref: EMAPA:37169 {source="MA:th"} xref: FMA:50941 xref: http://linkedlifedata.com/resource/umls/id/C0226524 xref: http://www.snomedbrowser.com/Codes/Details/29972009 xref: MA:0002169 xref: Maxillary:vein xref: NCIT:C32855 xref: OpenCyc:Mx4rvlDSc5wpEbGdrcN5Y29ycA xref: UMLS:C0226524 {source="ncithesaurus:Internal_Maxillary_Vein"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001656 ! retromandibular vein relationship: tributary_of UBERON:0001656 {source="FMA"} ! retromandibular vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png property_value: UBPROP:0000008 "in horses, a branch of the external jugular gives off the occipital and caudal auricular vein" xsd:string [Term] id: UBERON:0001661 name: deep temporal vein namespace: uberon def: "The blood vessels at the vertex and on either side of the head that drain deoxygenated blood into the pterygoid venous plexus." [ncithesaurus:Deep_Temporal_Vein] xref: EMAPA:37512 {source="MA:th"} xref: FMA:50954 xref: http://linkedlifedata.com/resource/umls/id/C0226526 xref: http://www.snomedbrowser.com/Codes/Details/798000 xref: MA:0002240 xref: NCIT:C52699 xref: UMLS:C0226526 {source="ncithesaurus:Deep_Temporal_Vein"} is_a: UBERON:0001671 ! temporal vein is_a: UBERON:0035552 ! deep vein intersection_of: UBERON:0001671 ! temporal vein intersection_of: part_of UBERON:0035551 ! deep vasculature [Term] id: UBERON:0001662 name: anterior auricular vein namespace: uberon def: "The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]." [http://en.wikipedia.org/wiki/Anterior_auricular_veins] synonym: "venae auriculares anteriores" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_auricular_veins] xref: EMAPA:37132 {source="MA:th"} xref: FMA:50956 xref: http://en.wikipedia.org/wiki/Anterior_auricular_veins xref: http://linkedlifedata.com/resource/umls/id/C0226527 xref: http://www.snomedbrowser.com/Codes/Details/151602009 xref: MA:0002083 xref: MA:0002214 xref: NCIT:C53027 xref: UMLS:C0226527 {source="ncithesaurus:Anterior_Auricular_Vein"} is_a: UBERON:0006197 ! auricular vein disjoint_from: UBERON:0006199 {source="lexical"} ! posterior auricular vein relationship: part_of UBERON:0001656 ! retromandibular vein relationship: tributary_of UBERON:0001656 {source="FMA"} ! retromandibular vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png [Term] id: UBERON:0001663 name: cerebral vein namespace: uberon def: "The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cerebral_veins] subset: pheno_slim synonym: "venae cerebri" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebral_veins] synonym: "venae encephali" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebral_veins] xref: Cerebral:veins xref: EMAPA:37140 {source="MA:th"} xref: FMA:50981 xref: GAID:530 xref: http://linkedlifedata.com/resource/umls/id/C0007797 xref: http://www.snomedbrowser.com/Codes/Details/244392000 xref: MA:0002096 xref: MESH:D002550 xref: NCIT:C53037 xref: UMLS:C0007797 {source="ncithesaurus:Cerebral_Vein"} xref: XAO:0004160 is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! brain blood vessel property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9f/Gray568.png property_value: UBPROP:0000202 FMA:70861 [Term] id: UBERON:0001664 name: inferior cerebral vein namespace: uberon def: "The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_cerebral_veins] subset: uberon_slim synonym: "small cerebral vein" RELATED [] xref: EMAPA:37154 {source="MA:th"} xref: FMA:50986 xref: http://en.wikipedia.org/wiki/Inferior_cerebral_veins xref: http://www.snomedbrowser.com/Codes/Details/244395003 xref: MA:0002097 is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0001668 name: cerebellar vein namespace: uberon def: "A vein that drains the cerebellum." [http://orcid.org/0000-0002-6601-2165] synonym: "cerebellum vein" EXACT [OBOL:automatic] synonym: "epencephalon-1 vein" EXACT [OBOL:automatic] synonym: "vein of cerebellum" EXACT [OBOL:automatic] synonym: "vein of epencephalon-1" EXACT [OBOL:automatic] xref: Cerebellar:veins xref: EMAPA:37139 {source="MA:th"} xref: FMA:51227 xref: http://linkedlifedata.com/resource/umls/id/C0226601 xref: http://www.snomedbrowser.com/Codes/Details/40693009 xref: MA:0002093 xref: NCIT:C53032 xref: UMLS:C0226601 {source="ncithesaurus:Cerebellar_Vein"} is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001669 name: superior cerebellar vein namespace: uberon def: "The superior cerebellar veins pass partly forward and medialward, across the superior vermis, to end in the straight sinus and the internal cerebral veins, partly lateralward to the transverse and superior petrosal sinuses. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_cerebellar_vein] subset: uberon_slim synonym: "vein of superior cerebellar hemisphere" EXACT [] xref: EMAPA:37191 {source="MA:th"} xref: FMA:51232 xref: http://en.wikipedia.org/wiki/Superior_cerebellar_vein xref: http://www.snomedbrowser.com/Codes/Details/64307009 xref: MA:0002095 is_a: UBERON:0001668 ! cerebellar vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/97/Gray704.png [Term] id: UBERON:0001670 name: inferior cerebellar vein namespace: uberon def: "The inferior cerebellar veins are of large size, end in the transverse, superior petrosal, and occipital sinuses. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_cerebellar_vein] subset: uberon_slim synonym: "inferior vein of cerebellar hemisphere" EXACT [] xref: EMAPA:37153 {source="MA:th"} xref: FMA:51233 xref: http://en.wikipedia.org/wiki/Inferior_cerebellar_vein xref: http://www.snomedbrowser.com/Codes/Details/69104006 xref: MA:0002094 is_a: UBERON:0001668 ! cerebellar vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/97/Gray704.png [Term] id: UBERON:0001671 name: temporal vein namespace: uberon def: "Any of the veins draining the temporal region." [http://www.thefreedictionary.com/temporal+vein] subset: uberon_slim xref: EMAPA:37196 {source="MA:th"} xref: FMA:51302 xref: http://linkedlifedata.com/resource/umls/id/C0924206 xref: MA:0002239 xref: NCIT:C53140 xref: Temporal:vein xref: UMLS:C0924206 {source="ncithesaurus:Temporal_Vein"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png property_value: UBPROP:0000001 "A vein in front of the ear that drains the head and face and joins with the internal maxillary vein to form the temporo-maxillary vein." xsd:string {source="ncithesaurus:Temporal_Vein"} [Term] id: UBERON:0001672 name: anterior cerebral vein namespace: uberon subset: vertebrate_core synonym: "ACeV" RELATED [] synonym: "rostral cerebral vein" RELATED [] xref: EMAPA:36467 xref: FMA:51306 xref: http://www.snomedbrowser.com/Codes/Details/55155007 xref: TAO:0001067 xref: XAO:0004158 xref: ZFA:0001067 is_a: UBERON:0001663 ! cerebral vein disjoint_from: UBERON:2005027 {source="lexical"} ! posterior cerebral vein [Term] id: UBERON:0001673 name: central retinal vein namespace: uberon def: "The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Central_retinal_vein] subset: efo_slim subset: uberon_slim synonym: "retinal vein" EXACT [MA:0002213] synonym: "vena centralis retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Central_retinal_vein] xref: EFO:0004271 xref: EMAPA:37185 {source="MA:th"} xref: FMA:51799 xref: GAID:524 xref: http://en.wikipedia.org/wiki/Central_retinal_vein xref: http://linkedlifedata.com/resource/umls/id/C0035327 xref: http://www.snomedbrowser.com/Codes/Details/280913005 xref: MA:0002213 xref: MESH:D012169 xref: NCIT:C53063 xref: UMLS:C0035327 {source="ncithesaurus:Retinal_Vein"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: develops_from UBERON:0006011 ! hyaloid vein relationship: develops_from_part_of UBERON:0006011 {notes="proximal portion", source="ISBN:0781772214"} ! hyaloid vein relationship: part_of UBERON:0003712 ! cavernous sinus relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus [Term] id: UBERON:0001674 name: masseteric vein namespace: uberon def: "A plexiform vein accompanying the masseteric artery that empty into the pterygoid venous plexus." [http://www.drugs.com/dict/masseteric-veins.html] synonym: "masseteric veins" RELATED PLURAL [] xref: EMAPA:37168 {source="MA:th"} xref: FMA:52519 xref: http://linkedlifedata.com/resource/umls/id/C0925179 xref: MA:0002167 xref: NCIT:C53051 xref: UMLS:C0925179 {source="ncithesaurus:Masseteric_Vein"} is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001776 name: optic choroid namespace: uberon def: "vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." [http://en.wikipedia.org/wiki/Choroid] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "chorioid" RELATED [BTO:0001829] synonym: "choroid" EXACT [MA:0000263] synonym: "choroid coat" EXACT [http://en.wikipedia.org/wiki/Choroid] synonym: "choroidea" EXACT [http://en.wikipedia.org/wiki/Choroid] synonym: "choroidea" RELATED LATIN [http://en.wikipedia.org/wiki/Choroid] synonym: "eye choroid" EXACT [VHOG:0001568] synonym: "optic choroid" RELATED [ZFA:0005229] synonym: "posterior uvea" EXACT [http://en.wikipedia.org/wiki/Uvea#Regions] xref: BTO:0001829 xref: CALOHA:TS-2054 xref: EMAPA:19077 xref: EV:0100347 xref: FMA:58298 xref: GAID:913 xref: http://en.wikipedia.org/wiki/Choroid xref: http://linkedlifedata.com/resource/umls/id/C0008520 xref: http://www.snomedbrowser.com/Codes/Details/181172003 xref: MA:0000263 xref: MESH:D002829 xref: NCIT:C12344 xref: TAO:0005229 xref: UMLS:C0008520 {source="ncithesaurus:Choroid"} xref: VHOG:0001568 xref: ZFA:0005229 is_a: UBERON:0002203 ! vasculature of eye property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg property_value: IAO:0000116 "check choroid vs choroid layer; check ZFA/TAO placement - no homology assertion in VHOG. Note this is entirely in the posterior region of eyeball in ZFA" xsd:string property_value: UBPROP:0000007 "choroidal" xsd:string property_value: UBPROP:0000012 "MP treats posterior uvea and optic choroid as distinct" xsd:string {external_ontology="MP"} [Term] id: UBERON:0001884 name: phrenic nerve namespace: uberon def: "A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium." [VHOG:0000728] subset: pheno_slim subset: uberon_slim synonym: "diaphragmatic nerve" RELATED [BTO:0001063] synonym: "nervus phrenicus" RELATED LATIN [http://en.wikipedia.org/wiki/Phrenic_nerve] synonym: "nervus phrenicus" RELATED [BTO:0001063] synonym: "phrenic" RELATED [BTO:0001063] xref: BAMS:phn xref: BTO:0001063 xref: EHDAA:4677 xref: EMAPA:17813 xref: FMA:6191 xref: GAID:848 xref: http://linkedlifedata.com/resource/umls/id/C0031774 xref: http://www.snomedbrowser.com/Codes/Details/280344009 xref: MA:0001170 xref: MESH:D010791 xref: NCIT:C52813 xref: OpenCyc:Mx4rvtmdUJwpEbGdrcN5Y29ycA xref: Phrenic:nerve xref: UMLS:C0031774 {source="ncithesaurus:Phrenic_Nerve"} xref: VHOG:0000728 is_a: UBERON:0003473 ! thoracic cavity artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3c/Gray806.png property_value: UBPROP:0000001 "A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000728", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/phrenic+nerve"} [Term] id: UBERON:0001886 name: choroid plexus namespace: uberon def: "A network formed by blood vessels and the tela choroidea which secretes CSF into the ventricular spaces." [http://en.wikipedia.org/wiki/Choroid_plexus, ISBN:0471888893] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "chorioid plexus" EXACT [FMA:61934] synonym: "choroid plexus of cerebral hemisphere" RELATED [FMA:61934] synonym: "CP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] synonym: "plexus choroideus" EXACT LATIN [FMA:61934, FMA:TA] synonym: "plexus choroideus" RELATED LATIN [http://en.wikipedia.org/wiki/Choroid_plexus] synonym: "ventricular choroid plexus" RELATED [] xref: BAMS:CHP xref: BAMS:chp xref: BAMS:chpl xref: BAMS:GHP xref: BTO:0000258 xref: CALOHA:TS-0145 xref: Choroid:plexus xref: EFO:0001915 xref: EMAPA:32741 xref: FMA:61934 xref: GAID:607 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1377 xref: http://linkedlifedata.com/resource/umls/id/C0008524 xref: http://www.snomedbrowser.com/Codes/Details/264450003 xref: MA:0000823 xref: MBA:108 xref: MESH:D002831 xref: NCIT:C12694 xref: TAO:0001443 xref: UBERON:0001886 xref: UMLS:C0008524 {source="ncithesaurus:Choroid_Plexus"} xref: VHOG:0001377 xref: ZFA:0001443 is_a: UBERON:0005629 ! vascular plexus is_a: UBERON:0006876 ! vasculature of organ is_a: UBERON:0036303 ! vasculature of central nervous system disjoint_from: UBERON:0005336 ! capillary layer of choroid disjoint_from: UBERON:0010078 ! optic choroid vascular plexus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg property_value: IAO:0000116 "TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerebral hemisphere" xsd:string property_value: UBPROP:0000001 "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001443", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Fringe of the tela choroidea of the brain ventricles[MP]" xsd:string {source="MP:0000820"} property_value: UBPROP:0000007 "choroidal" xsd:string [Term] id: UBERON:0001889 name: trunk of phrenic nerve namespace: uberon synonym: "phrenic nerve trunk" EXACT [] synonym: "phrenic neural trunk" EXACT [] xref: EHDAA2:0001463 xref: EMAPA:37718 {source="MA:th"} xref: FMA:6198 xref: MA:0001177 relationship: part_of UBERON:0001884 ! phrenic nerve [Term] id: UBERON:0001915 name: endothelium of capillary namespace: uberon def: "An endothelium that is part of a capillary [Automatically generated definition]." [OBOL:automatic] synonym: "blood capillary endothelium" EXACT [OBOL:automatic] synonym: "capillary endothelium" EXACT [] synonym: "capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel" EXACT [OBOL:automatic] xref: BTO:0004954 xref: CALOHA:TS-0112 xref: EMAPA:36292 xref: FMA:62114 xref: http://linkedlifedata.com/resource/umls/id/C0006904 xref: MA:0000711 xref: NCIT:C49215 xref: UMLS:C0006904 {source="ncithesaurus:Capillary_Endothelium"} is_a: UBERON:0004638 ! blood vessel endothelium relationship: part_of UBERON:0001982 ! capillary [Term] id: UBERON:0001916 name: endothelium of arteriole namespace: uberon def: "An endothelium that is part of an arteriole [Automatically generated definition]." [OBOL:automatic] synonym: "arteriole endothelium" EXACT [] xref: EMAPA:36286 xref: FMA:62115 xref: http://linkedlifedata.com/resource/umls/id/C1179024 xref: MA:0000705 xref: NCIT:C49192 xref: UMLS:C1179024 {source="ncithesaurus:Arteriole_Endothelium"} is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004700 ! arterial system endothelium relationship: part_of UBERON:0001980 ! arteriole [Term] id: UBERON:0001917 name: endothelium of artery namespace: uberon def: "An endothelium that is part of an artery [Automatically generated definition]." [OBOL:automatic] synonym: "arterial endothelium" EXACT [] synonym: "artery endothelium" EXACT [] xref: AAO:0011013 xref: BTO:0004757 xref: EMAPA:35148 xref: FMA:62116 xref: http://linkedlifedata.com/resource/umls/id/C1179025 xref: MA:0000707 xref: NCIT:C49194 xref: UMLS:C1179025 {source="ncithesaurus:Artery_Endothelium"} xref: VHOG:0001215 xref: XAO:0000357 is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004700 ! arterial system endothelium relationship: part_of UBERON:0001637 ! artery property_value: UBPROP:0000001 "The endothelium is the thin layer of cells that lines the interior surface of blood vessels, forming an interface between circulating blood in the lumen and the rest of the vessel wall.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011013", ontology="AAO", source="XAO:curator"} property_value: UBPROP:0000003 "Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001215", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.207"} [Term] id: UBERON:0001918 name: endothelium of venule namespace: uberon def: "An endothelium that is part of a venule [Automatically generated definition]." [OBOL:automatic] synonym: "venule endothelium" EXACT [] xref: EMAPA:36290 xref: FMA:62117 xref: http://linkedlifedata.com/resource/umls/id/C1179026 xref: MA:0000716 xref: NCIT:C49319 xref: UMLS:C1179026 {source="ncithesaurus:Venule_Endothelium"} is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004701 ! venous system endothelium relationship: part_of UBERON:0001979 ! venule [Term] id: UBERON:0001919 name: endothelium of vein namespace: uberon def: "An endothelium that is part of a vein [Automatically generated definition]." [OBOL:automatic] synonym: "vein endothelium" EXACT [] synonym: "veinous endothelium" RELATED [VHOG:0001216] synonym: "venous endothelium" EXACT [] xref: AAO:0011110 xref: BTO:0004756 xref: EMAPA:36288 xref: FMA:62118 xref: http://linkedlifedata.com/resource/umls/id/C1179027 xref: MA:0000712 xref: NCIT:C49317 xref: UMLS:C1179027 {source="ncithesaurus:Vein_Endothelium"} xref: VHOG:0001216 xref: XAO:0000358 is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004701 ! venous system endothelium relationship: part_of UBERON:0001638 ! vein property_value: UBPROP:0000003 "Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001216", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.207"} [Term] id: UBERON:0001979 name: venule namespace: uberon def: "One of the minute vessels that collect deoxygenated blood from the capillary plexuses returns it to the veins" [MESH:A07.231.432.952, MP:0004125] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "venula" RELATED LATIN [http://en.wikipedia.org/wiki/Venule] xref: BTO:0002626 xref: EMAPA:35917 xref: FMA:63130 xref: http://en.wikipedia.org/wiki/Venule xref: http://linkedlifedata.com/resource/umls/id/C0042520 xref: http://www.snomedbrowser.com/Codes/Details/341687009 xref: MA:0000071 xref: MESH:A07.231.432.952 xref: NCIT:C12818 xref: TAO:0005315 xref: UMLS:C0042520 {source="ncithesaurus:Venule"} xref: VHOG:0001765 xref: ZFA:0005315 is_a: UBERON:0003920 ! venous blood vessel relationship: connects UBERON:0001638 ! vein relationship: connects UBERON:0001982 ! capillary property_value: depicted:by Illu:capillary.jpg property_value: UBPROP:0000001 "Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries. Venules carry blood toward the heart.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005315", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001980 name: arteriole namespace: uberon def: "The smallest division of the artery located between the muscular arteries and the capillaries[GO]." [GO:0014830] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteriola" RELATED LATIN [http://en.wikipedia.org/wiki/Arteriole] xref: AAO:0010253 xref: BTO:0001997 xref: EMAPA:35146 xref: FMA:63182 xref: http://en.wikipedia.org/wiki/Arteriole xref: http://linkedlifedata.com/resource/umls/id/C0003847 xref: http://www.snomedbrowser.com/Codes/Details/337724002 xref: MA:0000063 xref: MESH:D001160 xref: NCIT:C12672 xref: TAO:0002138 xref: UMLS:C0003847 {source="ncithesaurus:Arteriole"} xref: VHOG:0001763 xref: ZFA:0005255 is_a: UBERON:0003509 {source="MA"} ! arterial blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: connects UBERON:0001637 ! artery intersection_of: connects UBERON:0001982 ! capillary relationship: connects UBERON:0001637 ! artery relationship: connects UBERON:0001982 ! capillary relationship: contributes_to_morphology_of UBERON:0001637 ! artery property_value: depicted:by Illu:capillary.jpg property_value: UBPROP:0000001 "Multi-tissue structure part of the blood vasculature, feeds into capillaries. Arterioles carry blood away from the heart.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002138", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Small, terminal branch of an artery which generally connects to capillaries.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010253", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001981 name: blood vessel namespace: uberon def: "A vessel through which blood circulates in the body." [BTO:0001102, http://en.wikipedia.org/wiki/Blood_vessel] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "region of vascular tree organ" EXACT [FMA:50722] synonym: "vas sanguineum" RELATED LATIN [http://en.wikipedia.org/wiki/Blood_vessel] synonym: "vascular element" BROAD [EMAPA:35993] synonym: "vascular tree organ region" EXACT [FMA:50722] xref: AAO:0011004 xref: AEO:0000207 xref: Blood:vessel xref: BTO:0001102 xref: CALOHA:TS-0080 xref: EFO:0000817 xref: EHDAA2:0003252 xref: EHDAA:240 xref: EMAPA:32743 xref: EMAPA:35993 xref: FMA:50722 xref: FMA:63183 xref: GAID:169 xref: http://linkedlifedata.com/resource/umls/id/C0005847 xref: http://www.snomedbrowser.com/Codes/Details/361097006 xref: MA:0000060 xref: MAT:0000393 xref: MESH:D001808 xref: NCIT:C12679 xref: NLXANAT:090901 xref: OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA xref: TAO:0002137 xref: UMLS:C0005847 {source="ncithesaurus:Blood_Vessel"} xref: VHOG:0001250 xref: XAO:0001011 xref: ZFA:0005314 relationship: develops_from UBERON:0006965 {source="GO:0072360"} ! vascular cord relationship: has_part CL:0000071 {source="AEO"} ! blood vessel endothelial cell relationship: part_of UBERON:0004537 ! blood vasculature property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg property_value: IAO:0000116 "consider adopting the EMAPA superclass 'vascular element', which includes microvasculature (e.g. capillaries), vascular plexus" xsd:string property_value: UBPROP:0000001 "Any of the vessels through which blood circulates in the body. [XAO:0001011_][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001250", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000001 "Any of the vessels through which blood circulates in the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011004", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001250", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2006)"} property_value: UBPROP:0000008 "annelids have blood vessels, but this class is not applicable to annelids." xsd:string property_value: UBPROP:0000012 "FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001982 name: capillary namespace: uberon def: "Any of the smallest blood vessels connecting arterioles with venules." [http://en.wikipedia.org/wiki/Capillary, https://github.com/obophenotype/uberon/issues/137, ISBN:0073040584] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "blood capillary" EXACT [] synonym: "capillary vessel" EXACT [] xref: AAO:0010252 xref: BTO:0002045 xref: CALOHA:TS-2006 xref: EFO:0001906 xref: EMAPA:35198 xref: EV:0100035 xref: FMA:63194 xref: http://en.wikipedia.org/wiki/Capillary xref: http://linkedlifedata.com/resource/umls/id/C0935624 xref: MA:0000065 xref: MESH:A07.231.432.410 xref: NCIT:C12685 xref: NLXANAT:090902 xref: OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA xref: TAO:0005250 xref: UMLS:C0935624 {source="ncithesaurus:Capillary"} xref: VHOG:0001253 xref: XAO:0000116 xref: ZFA:0005250 is_a: UBERON:0001981 {source="FMA", source="MA", source="XAO"} ! blood vessel is_a: UBERON:0010523 {source="ZFA"} ! microcirculatory vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: connects UBERON:0001979 ! venule intersection_of: connects UBERON:0001980 ! arteriole relationship: connects UBERON:0001979 ! venule relationship: connects UBERON:0001980 ! arteriole property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/2f/A_red_blood_cell_in_a_capillary,_pancreatic_tissue_-_TEM.jpg property_value: IAO:0000116 "not all sources agree capillary is a blood vessel - consider adopting EMAPA superclass of vascular element" xsd:string property_value: UBPROP:0000001 "Any of the tiny blood vessels connecting the arterioles to the venules.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010252", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001253", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2006)"} property_value: UBPROP:0000010 "capillaries lack tunica media and tunica adventitia; only the endothelial wall of the tunica intima belongs" xsd:string [Term] id: UBERON:0002011 name: thoracodorsal artery namespace: uberon def: "The thoracodorsal artery is a branch of the subscapular artery. It travels inferiorly with the thoracodorsal nerve and supplies the latissimus dorsi. [WP,unvetted]." [http://en.wikipedia.org/wiki/Thoracodorsal_artery] subset: uberon_slim synonym: "arteria thoracodorsalis" RELATED LATIN [http://en.wikipedia.org/wiki/Thoracodorsal_artery] xref: EMAPA:37129 {source="MA:th"} xref: FMA:66320 xref: http://linkedlifedata.com/resource/umls/id/C0933449 xref: MA:0002065 xref: NCIT:C53018 xref: Thoracodorsal:artery xref: UMLS:C0933449 {source="ncithesaurus:Thoracodorsal_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by Latissimus:dorsi.png [Term] id: UBERON:0002012 name: pulmonary artery namespace: uberon def: "An artery that carries deoxygenated blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood.." [http://en.wikipedia.org/wiki/Pulmonary_artery, http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "arteria pulmonalis" RELATED LATIN [http://en.wikipedia.org/wiki/Pulmonary_artery] synonym: "pulmonary arterial subtree" RELATED [FMA:66326] synonym: "pulmonary arterial tree" EXACT [FMA:66326] synonym: "pulmonary arterial tree organ part" EXACT [FMA:66326] synonym: "truncus pulmonalis" RELATED LATIN [http://en.wikipedia.org/wiki/Pulmonary_artery] xref: AAO:0010221 xref: BTO:0000778 xref: CALOHA:TS-0839 xref: EFO:0001399 xref: EHDAA2:0001575 xref: EHDAA:4351 xref: EMAPA:17008 xref: FMA:66326 xref: GAID:505 xref: galen:PulmonaryArtery xref: http://linkedlifedata.com/resource/umls/id/C0034052 xref: http://www.snomedbrowser.com/Codes/Details/181380003 xref: MA:0002031 xref: MESH:D011651 xref: NCIT:C12774 xref: OpenCyc:Mx4rvVjbIpwpEbGdrcN5Y29ycA xref: Pulmonary:artery xref: UMLS:C0034052 {source="ncithesaurus:Pulmonary_Artery"} xref: VHOG:0000982 xref: XAO:0004162 is_a: UBERON:0001637 ! artery is_a: UBERON:0013768 ! great vessel of heart disjoint_from: UBERON:0004573 ! systemic artery relationship: continuous_with UBERON:0002333 ! pulmonary trunk relationship: develops_from UBERON:0002061 {source="Wikipedia"} ! truncus arteriosus relationship: develops_from UBERON:0003123 {source="EHDAA2", source="XAO"} ! pharyngeal arch artery 6 relationship: develops_from UBERON:0005339 {source="EHDAA2"} ! outflow tract pulmonary component relationship: part_of UBERON:0008886 ! pulmonary vascular system property_value: depicted:by Alveoli:diagram.png property_value: UBPROP:0000001 "Major artery which supplies blood to the lungs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010221", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "One of two arteries, leaving from the heart, the left one supplying the left lung and the right one supplying the right lung. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000982", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+artery"} property_value: UBPROP:0000003 "On the other hand, in the sister clade of the actinopterygians, the sarcopterygians, the gill circulation is supplemented with lung ventilation. As a result, the pulmonary artery and vein and a functional ductus arteriosus arose as a major evolutionary innovation from the sixth arch, giving the organism a flexible shunt to balance blood supply to and from gills and lungs according to environmental conditions.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000982", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} property_value: UBPROP:0000008 "In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung[WP]" xsd:string [Term] id: UBERON:0002016 name: pulmonary vein namespace: uberon def: "Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]." [GO:0060577] subset: pheno_slim subset: uberon_slim synonym: "pulmonary venous tree organ part" EXACT [] synonym: "venae pulmonales" RELATED LATIN [http://en.wikipedia.org/wiki/Pulmonary_vein] xref: AAO:0010521 xref: BTO:0001799 xref: CALOHA:TS-0840 xref: EHDAA2:0001579 xref: EHDAA:2629 xref: EMAPA:18645 xref: FMA:66643 xref: GAID:543 xref: galen:PulmonaryVein xref: http://linkedlifedata.com/resource/umls/id/C0034090 xref: http://www.snomedbrowser.com/Codes/Details/430160002 xref: MA:0002206 xref: MESH:D011667 xref: NCIT:C12776 xref: Pulmonary:vein xref: UMLS:C0034090 {source="ncithesaurus:Pulmonary_Vein"} xref: VHOG:0001133 xref: XAO:0000394 is_a: UBERON:0001638 ! vein is_a: UBERON:0013768 ! great vessel of heart relationship: develops_from UBERON:0002061 ! truncus arteriosus relationship: part_of UBERON:0008886 ! pulmonary vascular system property_value: depicted:by Alveoli:diagram.png property_value: UBPROP:0000001 "Any of the veins which collect blood from the lungs and some small vesicles received from the esophagus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010521", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "One of two pairs of large vessels that return oxygenated blood from each lung to the left atrium of the heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001133", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+vein"} property_value: UBPROP:0000001 "the veins that return oxygenated blood from the lungs to the left atrium of the heart" xsd:string {source="MP:0002726,MGI:cwg"} property_value: UBPROP:0000003 "On the other hand, in the sister clade of the actinopterygians, the sarcopterygians, the gill circulation is supplemented with lung ventilation. As a result, the pulmonary artery and vein and a functional ductus arteriosus arose as a major evolutionary innovation from the sixth arch, giving the organism a flexible shunt to balance blood supply to and from gills and lungs according to environmental conditions.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001133", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} property_value: UBPROP:0000202 FMA:70827 [Term] id: UBERON:0002017 name: portal vein namespace: uberon def: "A vein that conducts blood from the digestive organs, spleen, pancreas, and gallbladder to the liver[BTO]." [BTO:0001792] subset: pheno_slim subset: uberon_slim synonym: "portal venous tree organ part" EXACT [FMA:66645] xref: BTO:0001792 xref: CALOHA:TS-0814 xref: EHDAA2:0001485 xref: EHDAA:6510 xref: EMAPA:17349 xref: FMA:66645 xref: GAID:540 xref: galen:PortalVein xref: http://linkedlifedata.com/resource/umls/id/C0032718 xref: http://www.snomedbrowser.com/Codes/Details/362064007 xref: MA:0002198 xref: MESH:D011169 xref: NCIT:C33343 xref: OpenCyc:Mx4rv_bem5wpEbGdrcN5Y29ycA xref: UMLS:C0032718 {source="ncithesaurus:Portal_Vein"} xref: VHOG:0000656 xref: XAO:0000392 is_a: UBERON:0001638 {source="FMA"} ! vein relationship: part_of UBERON:0005806 ! portal system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png [Term] id: UBERON:0002039 name: inferior phrenic vein namespace: uberon def: "The Inferior Phrenic Veins drain the diaphragm and follow the course of the inferior phrenic arteries; the right ends in the inferior vena cava; the left is often represented by two branches, one of which ends in the left renal or suprarenal vein, while the other passes in front of the esophageal hiatus in the diaphragm and opens into the inferior vena cava. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_phrenic_vein] subset: uberon_slim synonym: "venae phrenicae inferiores" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_phrenic_vein] xref: EMAPA:37157 {source="MA:th"} xref: FMA:68068 xref: http://en.wikipedia.org/wiki/Inferior_phrenic_vein xref: http://www.snomedbrowser.com/Codes/Details/286500002 xref: MA:0002195 is_a: UBERON:0012193 {source="MA"} ! phrenic vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png [Term] id: UBERON:0002040 name: bronchial artery namespace: uberon def: "A systemic artery that supplies the lung with with oxygenated blood." [http://en.wikipedia.org/wiki/Bronchial_artery, UBERON:cjm] comment: Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung. subset: uberon_slim synonym: "arteriae bronchiales" RELATED LATIN [http://en.wikipedia.org/wiki/Bronchial_artery] synonym: "bronchial arterial tree" EXACT [] synonym: "rami bronchiales partis thoracicae aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Bronchial_artery] xref: Bronchial:artery xref: EMAPA:18608 xref: FMA:68109 xref: GAID:477 xref: http://linkedlifedata.com/resource/umls/id/C0006257 xref: http://www.snomedbrowser.com/Codes/Details/244247009 xref: MA:0001923 xref: MESH:D001981 xref: NCIT:C32230 xref: OpenCyc:Mx4r4sy0UiNbEd2AAAACs6hRXg xref: UMLS:C0006257 {source="ncithesaurus:Bronchial_Artery"} is_a: UBERON:0004573 ! systemic artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray1032.png [Term] id: UBERON:0002042 name: lymphatic vessel endothelium namespace: uberon def: "An endothelium that is part of a lymphatic vessel [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim subset: vertebrate_core synonym: "endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "endothelium of lymphatic vessel" EXACT [FMA:68444] synonym: "lymph vessel endothelium" EXACT [OBOL:automatic] synonym: "lymphatic endothelium" EXACT [BTO:0004303] synonym: "lymphatic vessel endothelium" EXACT [] xref: BTO:0004303 xref: CALOHA:TS-2156 xref: EMAPA:35533 xref: FMA:68444 xref: http://linkedlifedata.com/resource/umls/id/C1180786 xref: MA:0000750 xref: MESH:D004729 xref: NCIT:C49258 xref: TAO:0005258 xref: UMLS:C1180786 {source="ncithesaurus:Lymphatic_Vessel_Endothelium"} xref: ZFA:0005258 is_a: UBERON:0004852 ! cardiovascular system endothelium relationship: contributes_to_morphology_of UBERON:0001473 ! lymphatic vessel relationship: has_part CL:0002138 {source="FMA"} ! endothelial cell of lymphatic vessel relationship: part_of UBERON:0001473 ! lymphatic vessel property_value: UBPROP:0000001 "The vascular endothelium that lines the lymph vessels.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005258", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0002049 name: vasculature namespace: uberon def: "An interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face." [ZFA:0005249] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "vascular network" EXACT [FMA:69050] xref: BTO:0003718 xref: FMA:69050 xref: TAO:0005249 xref: ZFA:0005249 is_a: BFO:0000040 ! material entity relationship: part_of UBERON:0007798 ! vascular system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg property_value: IAO:0000116 "see also: vascular system. Consider merging?" xsd:string property_value: UBPROP:0000007 "vascular" xsd:string [Term] id: UBERON:0002056 name: inferior suprarenal artery namespace: uberon def: "Each renal artery gives off some small inferior suprarenal branches to the suprarenal gland, the ureter, and the surrounding cellular tissue and muscles. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_suprarenal_artery] subset: uberon_slim synonym: "arteria suprarenalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_suprarenal_artery] xref: EMAPA:37088 {source="MA:th"} xref: FMA:69264 xref: http://en.wikipedia.org/wiki/Inferior_suprarenal_artery xref: http://linkedlifedata.com/resource/umls/id/C0226334 xref: http://www.snomedbrowser.com/Codes/Details/303426004 xref: MA:0002056 xref: NCIT:C52737 xref: UMLS:C0226334 {source="ncithesaurus:Inferior_Suprarenal_Artery"} is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0005624 ! suprarenal artery intersection_of: UBERON:0005624 ! suprarenal artery intersection_of: branching_part_of UBERON:0001184 ! renal artery relationship: branching_part_of UBERON:0001184 ! renal artery relationship: part_of UBERON:0001184 ! renal artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png [Term] id: UBERON:0002057 name: phrenic artery namespace: uberon def: "An artery that supplies the diaphragm" [https://orcid.org/0000-0002-6601-2165] subset: uberon_slim xref: EMAPA:37108 {source="MA:th"} xref: FMA:69330 xref: http://linkedlifedata.com/resource/umls/id/C1181536 xref: MA:0002019 xref: NCIT:C33320 xref: UMLS:C1181536 {source="ncithesaurus:Phrenic_Artery"} is_a: UBERON:0004573 ! systemic artery property_value: UBPROP:0000008 "In humans this includes the superior and inferior phrenic arteries" xsd:string [Term] id: UBERON:0002060 name: femoral artery namespace: uberon def: "The femoral artery is a large artery in the muscles of the thigh. It is a continuation of external iliac artery where it enters the femoral triangle at the mid inguinal point behind the inguinal ligament. It leaves femoral triangle through apex beneath the sartorius muscle. It enters the popliteal fossa by passing through the 5th osseo-aponeurotic(adductor hiatus) opening of adductor magnus where it becomes the Popliteal Artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Femoral_artery] subset: uberon_slim synonym: "arteria femoralis" RELATED LATIN [http://en.wikipedia.org/wiki/Femoral_artery] xref: AAO:0010222 xref: BTO:0001624 xref: CALOHA:TS-0321 xref: EMAPA:35342 xref: Femoral:artery xref: FMA:70248 xref: GAID:494 xref: galen:FemoralArtery xref: http://linkedlifedata.com/resource/umls/id/C0015801 xref: http://www.snomedbrowser.com/Codes/Details/244332003 xref: MA:0001951 xref: MESH:D005263 xref: NCIT:C12715 xref: OpenCyc:Mx4rwHMI05wpEbGdrcN5Y29ycA xref: UMLS:C0015801 {source="ncithesaurus:Femoral_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001308 {source="FMA", source="WP"} ! external iliac artery relationship: part_of UBERON:0001308 ! external iliac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray546.png property_value: UBPROP:0000001 "Artery which supplies blood via branches to the hindlimbs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010222", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0002061 name: truncus arteriosus namespace: uberon def: "The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles." [http://en.wikipedia.org/wiki/Truncus_arteriosus_(embryology)] subset: uberon_slim xref: EHDAA2:0004143 xref: EMAPA:35887 xref: FMA:70301 xref: GAID:554 xref: http://en.wikipedia.org/wiki/Truncus_arteriosus_(embryology) xref: http://linkedlifedata.com/resource/umls/id/C1519589 xref: http://www.snomedbrowser.com/Codes/Details/308828009 xref: MA:0000103 xref: MESH:D014338 xref: NCIT:C34317 xref: OpenCyc:Mx4rquH9YKgNEdudWQACs5b6Bw xref: UMLS:C1519589 {source="ncithesaurus:Trancus_Arteriosus"} is_a: UBERON:0001637 {source="EHDAA2"} ! artery is_a: UBERON:0003498 ! heart blood vessel relationship: develops_from UBERON:0005432 {source="EHDAA2"} ! aortic sac relationship: part_of UBERON:0004145 {source="MA"} ! outflow tract property_value: UBPROP:0000012 "assume spelling error for ncit" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0002062 name: endocardial cushion namespace: uberon def: "The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]." [GO:0003197, http://en.wikipedia.org/wiki/Atrioventricular_cushions, ZFIN:curator] comment: GO graph seems to suggest this is an endothelium. WP: The endocardial cushions are thought to arise from a subset of endothelial cells that undergo epithelial to mesenchymal transformation, a process whereby these cells break cell-to-cell contacts and migrate into the cardiac jelly (towards to interior of the heart tube). Latest (2010-06-01) new def suggested for GO, added above. Note that EHDAA2 has a more detailed model which we may later adopt. JB: Patterning makes the cushions lay down connective tissue in three domains that force out the local endothelial lining and so the leaflets form subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "atrioventricular canal cushion" RELATED [FMA:70302] synonym: "atrioventricular cushion" EXACT [http://en.wikipedia.org/wiki/Endocardial_cushion] synonym: "AV cushion" EXACT [] synonym: "cardiac cushion" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/15797462] synonym: "endocardial cushion tissue" EXACT [EHDAA2:0000434] synonym: "endocardial cushions" RELATED PLURAL [] xref: Atrioventricular:cushions xref: EHDAA2:0000434 xref: EHDAA2:0004028 xref: EHDAA:2586 xref: EMAPA:16696 xref: FMA:70302 xref: MA:0000078 xref: TAO:0001317 xref: VHOG:0000932 xref: XAO:0004189 xref: ZFA:0001317 is_a: UBERON:0009751 ! cardiac mesenchyme relationship: part_of UBERON:0002165 {source="ZFA"} ! endocardium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png property_value: UBPROP:0000001 "Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001317", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from endocardial ring (TAO:0005072)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001317", ontology="TAO"} property_value: UBPROP:0000003 "(Cardiac valve formation in vertebrates) In response to a myocardial signal, endocardial cells at chamber boundaries take on a mesenchymal character, delaminate and migrate into the cardiac jelly. There, they form an endocardial cushion that is later remodelled into a valve.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000932", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/35047564 Stainier DYR, Zebrafish genetics and vertebrate heart formation. Nature Reviews Genetics (2001) Figure 3"} [Term] id: UBERON:0002063 name: sinus venosus namespace: uberon def: "The sinus venosus is a large cardiac chamber at the inflow tract that receives venous blood from systemic circulation. precedes the atrium on the venous side of the chordate heart." [http://en.wikipedia.org/wiki/Sinus_venosus, http://www.ncbi.nlm.nih.gov/pubmed/20735616] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "inflow tract" BROAD [ZFA:0000154] synonym: "sinus venarum" RELATED [http://en.wikipedia.org/wiki/Sinus_venosus] synonym: "sinus venosus cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Sinus_venosus] synonym: "venarum" RELATED [http://en.wikipedia.org/wiki/Sinus_venosus] synonym: "venarum sinus" RELATED [http://en.wikipedia.org/wiki/Sinus_venosus] synonym: "venosus" RELATED [http://en.wikipedia.org/wiki/Sinus_venosus] xref: AAO:0010505 xref: EHDAA2:0001839 xref: EHDAA:480 xref: EMAPA:16237 xref: FMA:70303 xref: http://linkedlifedata.com/resource/umls/id/C0225857 xref: http://linkedlifedata.com/resource/umls/id/C0231084 xref: NCIT:C34299 xref: NCIT:C34300 xref: Sinus:venosus xref: TAO:0000154 xref: UMLS:C0225857 {source="ncithesaurus:Sinus_Venarum"} xref: UMLS:C0231084 {source="ncithesaurus:Sinus_Venosus"} xref: VHOG:0000177 xref: ZFA:0000154 is_a: UBERON:0004151 ! cardiac chamber disjoint_from: UBERON:0006615 ! venous sinus relationship: part_of UBERON:0002350 {source="VHOG"} ! conducting system of heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png property_value: UBPROP:0000001 "Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four components of the heart. The sinus venosus also acts as a pacemaker and is the first to contract. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000154", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Part of the circulatory system which receives blood from the systemic veins and contracts to pump the blood into the atrium of the heart.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010505", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "In the primitive vertebrate heart the four chambers are: 1. Sinus venosus (...) 2. Atrium (...) 3. Ventricle (...) 4. Conus arteriosus (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000177", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0721676678 Romer AS, Vertebrate body (1970) p.428"} property_value: UBPROP:0000008 "In fish, receives venous blood from the systemic circulation through paired hepatic veins, anterior jugular veins and Cuvierian ducts[PMID:20735616]" xsd:string property_value: UBPROP:0000008 "In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis. The sinus venosus also forms the SA node and the coronary sinus. In the embryo, the thin walls of the sinus venosus are connected below with the right ventricle, and medially with the left atrium, but are free in the rest of their extent. It receives blood from the vitelline vein, umbilical vein and common cardinal vein. It originally starts as a paired structure but shifts towards associating only with the right atrium as the embryonic heart develops. The left portion shrinks in size and eventually forms the coronary sinus and oblique vein of the left atrium, whereas the right part becomes incorporated into the right atrium to form the sinus venarmu" xsd:string property_value: UBPROP:0000008 "In zebrafish, the sinus venosus also acts as a pacemaker and is the first to contract" xsd:string {source="ZFA:0000154"} [Term] id: UBERON:0002064 name: common cardinal vein namespace: uberon def: "Either of a pair of large transverse venous sinuses that conduct blood from the cardinal veins to the sinus venosus of the vertebrate embryo[BTO]." [BTO:0004388, http://en.wikipedia.org/wiki/Common_cardinal_veins] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "Cuvierian duct" RELATED [] synonym: "duct of Cuvier" RELATED [] synonym: "future coronary sinus" RELATED [EMAPA:16356] xref: AAO:0011033 xref: BTO:0004388 xref: EHDAA:1314 xref: EMAPA:16356 xref: FMA:70308 xref: http://en.wikipedia.org/wiki/Common_cardinal_veins xref: http://linkedlifedata.com/resource/umls/id/C0231083 xref: http://www.snomedbrowser.com/Codes/Details/308783008 xref: NCIT:C34130 xref: TAO:0000186 xref: UMLS:C0231083 {source="ncithesaurus:Common_Cardinal_Vein"} xref: VHOG:0000112 xref: XAO:0000373 xref: ZFA:0000186 is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004344 ! cardinal vein relationship: part_of UBERON:0002201 ! vasculature of trunk property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray477.svg property_value: UBPROP:0000001 "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000186", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein, also known as the duct of Cuvier that leads to the heart's sinus venosus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011033", ontology="AAO", source="ZFA:0000186"} property_value: UBPROP:0000002 "relationship loss: part_of cardinal system (TAO:0000096)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000186", ontology="TAO"} property_value: UBPROP:0000003 "In primitive vertebrates, the basic early embryonic pattern is retained, and blood from anterior and posterior systemic tissues is returned in anterior and posterior cardinal veins, both pairs of veins uniting in common cardinal veins near the heart. In derived vertebrates, the cardinals appear but usually persist only in the embryo, being functionally replaced by alternative adult vessels, the precava and postcava (anterior and posterior venae cavae).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000112", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.462"} property_value: UBPROP:0000008 "Paired in gnathostomes; with only a vestige of the right duct in the adult hagfish (21) and the left duct atrophying at metamorphosis in the lamprey (22)[PMID:20959416, S1]" xsd:string [Term] id: UBERON:0002065 name: posterior cardinal vein namespace: uberon def: "One of two paired cardinal veins that return blood from the body of the embryo[Kardong]" [http://en.wikipedia.org/wiki/Posterior_cardinal_vein, ISBN:0073040584] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "axial vein" RELATED [] synonym: "caudal cardinal veins" RELATED [] synonym: "inferior cardinal vein" RELATED [http://www.embryology.ch/anglais/pcardio/venen01.html] synonym: "PCV" RELATED [] synonym: "postcardinal vein" RELATED [AAO:0010511, FMA:70314, http://en.wikipedia.org/wiki/Posterior_cardinal_vein] xref: AAO:0010511 xref: BTO:0004386 xref: EHDAA2:0001486 xref: EHDAA:1316 xref: EMAPA:16357 xref: FMA:70314 xref: http://en.wikipedia.org/wiki/Posterior_cardinal_vein xref: http://linkedlifedata.com/resource/umls/id/C0231087 xref: http://www.snomedbrowser.com/Codes/Details/308781005 xref: NCIT:C34257 xref: TAO:0000477 xref: UMLS:C0231087 {source="ncithesaurus:Posterior_Cardinal_Vein"} xref: VHOG:0000111 xref: XAO:0000241 xref: ZFA:0000477 is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004344 ! cardinal vein disjoint_from: UBERON:0003087 {source="lexical"} ! anterior cardinal vein relationship: channels_from UBERON:0002201 ! vasculature of trunk relationship: part_of UBERON:0002201 ! vasculature of trunk property_value: UBPROP:0000001 "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. [TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000477", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Either of two veins which receive blood as an alternate route from the kidneys.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010511", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000002 "relationship loss: part_of axial vasculature (TAO:0001073)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000477", ontology="TAO"} property_value: UBPROP:0000002 "relationship loss: part_of cardinal system (TAO:0000096)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000477", ontology="TAO"} property_value: UBPROP:0000003 "In primitive vertebrates, the basic early embryonic pattern is retained, and blood from anterior and posterior systemic tissues is returned in anterior and posterior cardinal veins, both pairs of veins uniting in common cardinal veins near the heart. In derived vertebrates, the cardinals appear but usually persist only in the embryo, being functionally replaced by alternative adult vessels, the precava and postcava (anterior and posterior venae cavae).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000111", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.462"} property_value: UBPROP:0000011 "join with the corresponding right and left cardinal veins to form the left common cardinal veins, which empty in the sinus venosus. Most of the posterior cardinal veins regress, what remains of them forms the renal segment of the inferior vena cava and the common iliac veins. Later in the development stages, the posterior cardinal veins are replaced by the subcardinal and supracardinal veins. The subcardinal veins form part of the inferior vena cava, renal veins and gonadal veins. The supracardinal veins form part of the inferior vena cava, the intercostal veins, hemiazygos vein and azygos vein" xsd:string {source="WP"} [Term] id: UBERON:0002066 name: umbilical vein namespace: uberon def: "The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Umbilical_vein, https://github.com/obophenotype/uberon/issues/328] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "vena umbilicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Umbilical_vein] xref: BTO:0001509 xref: CALOHA:TS-1082 xref: EFO:0001940 xref: EHDAA:1034 xref: EHDAA:488 xref: EMAPA:16243 xref: EMAPA:16375 xref: EV:0100392 xref: FMA:70317 xref: GAID:542 xref: http://linkedlifedata.com/resource/umls/id/C0041637 xref: http://www.snomedbrowser.com/Codes/Details/367567000 xref: MA:0002249 xref: MESH:D014471 xref: NCIT:C33830 xref: OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g xref: RETIRED_EHDAA2:0002107 xref: Umbilical:vein xref: UMLS:C0041637 {source="ncithesaurus:Umbilical_Vein"} is_a: UBERON:0001638 ! vein is_a: UBERON:0010260 ! umbilical blood vessel property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png [Term] id: UBERON:0002070 name: superior pancreaticoduodenal artery namespace: uberon def: "The superior pancreaticoduodenal artery is an artery that supplies blood to the duodenum and pancreas. It is a branch of the gastroduodenal artery, which comes from the common hepatic artery of the celiac trunk. The common hepatic itself becomes the proper hepatic after giving off the gastroduodenal artery and goes on to supply the right and left lobes of the liver. The term superior distinguishes the superior pancreaticoduodenal artery from the inferior pancreaticoduodenal artery, which a branch of the superior mesenteric artery. These arteries, together with the pancreatic branches of the splenic artery, form connections or anastomoses with one another, allowing blood to perfuse the pancreas and duodenum through multiple channels. The artery splits into two branches: the anterior superior pancreaticoduodenal artery supplies the anterior margins of the duodenum and pancreas the posterior superior pancreaticoduodenal artery supplies the posterior margins of these organs [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_pancreaticoduodenal_artery] subset: uberon_slim synonym: "arteria pancreaticoduodenalis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_pancreaticoduodenal_artery] synonym: "bauchspeicheldrüsenzwölffingerdarmpulsader@de" EXACT [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml] synonym: "superior pancreatico-duodenal artery" EXACT [] synonym: "superior pancreatoduodenal artery" EXACT [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml] xref: EMAPA:37121 {source="MA:th"} xref: FMA:70437 xref: http://en.wikipedia.org/wiki/Superior_pancreaticoduodenal_artery xref: http://linkedlifedata.com/resource/umls/id/C0226317 xref: http://www.snomedbrowser.com/Codes/Details/244272009 xref: MA:0002015 xref: NCIT:C52742 xref: UMLS:C0226317 {source="ncithesaurus:Superior_Pancreatico-Duodenal_Artery"} is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009658 ! pancreaticoduodenal artery relationship: part_of UBERON:0010132 ! gastroduodenal artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray533.png [Term] id: UBERON:0002078 name: right cardiac atrium namespace: uberon def: "A cardiac atrium that is in the left side of the heart. It receives deoxygenated blood. In mammals, this comes from the superior and inferior vena cava and the coronary sinus, and pumps it into the right ventricle through the tricuspid valve." [http://en.wikipedia.org/wiki/Right_atrium, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "atrium dextrum" RELATED LATIN [http://en.wikipedia.org/wiki/Right_atrium] synonym: "cardiac right atrium" EXACT [] synonym: "heart right atrium" EXACT [MA:0000075] synonym: "right atrium" EXACT [VHOG:0000328] synonym: "right atrium of heart" EXACT [] synonym: "right cardiac atrium" EXACT [] xref: AAO:0010248 xref: BTO:0001703 xref: EHDAA2:0000290 xref: EMAPA:17321 xref: FMA:7096 xref: galen:RightAtrium xref: http://linkedlifedata.com/resource/umls/id/C0225844 xref: http://www.snomedbrowser.com/Codes/Details/244383003 xref: MA:0000075 xref: NCIT:C12868 xref: OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw xref: Right:atrium xref: UMLS:C0225844 {source="ncithesaurus:Right_Atrium"} xref: VHOG:0000328 xref: XAO:0003192 is_a: UBERON:0002081 ! cardiac atrium is_a: UBERON:0035554 ! right cardiac chamber intersection_of: UBERON:0002081 ! cardiac atrium intersection_of: in_right_side_of UBERON:0000948 ! heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg property_value: UBPROP:0000001 "Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava.[FMA]" xsd:string {source="FMA:7096"} property_value: UBPROP:0000003 "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000328", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0002079 name: left cardiac atrium namespace: uberon def: "A cardiac atrium that is in the left side of the heart. It receives oxygenated blood from the pulmonary veins, In mammals this is pumped into the left ventricle, via the Mitral valve." [http://en.wikipedia.org/wiki/Left_atrium, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "atrium sinistrum" EXACT LATIN [http://en.wikipedia.org/wiki/Left_atrium] synonym: "cardiac left atrium" EXACT [] synonym: "heart left atrium" EXACT [MA:0000074] synonym: "left atrium" EXACT [VHOG:0000369] synonym: "left atrium of heart" EXACT [] synonym: "left cardiac atrium" EXACT [] xref: AAO:0010247 xref: BTO:0001702 xref: EHDAA2:0000275 xref: EMAPA:17315 xref: FMA:7097 xref: galen:LeftAtrium xref: http://linkedlifedata.com/resource/umls/id/C0225860 xref: http://www.snomedbrowser.com/Codes/Details/244387002 xref: Left:atrium xref: MA:0000074 xref: NCIT:C12869 xref: OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw xref: UMLS:C0225860 {source="ncithesaurus:Left_Atrium"} xref: VHOG:0000369 xref: XAO:0003191 is_a: UBERON:0002081 ! cardiac atrium is_a: UBERON:0035553 ! left cardiac chamber intersection_of: UBERON:0002081 ! cardiac atrium intersection_of: in_left_side_of UBERON:0000948 ! heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg property_value: UBPROP:0000001 "Left cardiac chamber which is continuous with the pulmonary venous trunk.[FMA]" xsd:string {source="FMA:7097"} property_value: UBPROP:0000001 "The chamber of the heart that receives blood from the lungs[XAO:EJS]." xsd:string {source="XAO:EJS"} property_value: UBPROP:0000003 "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000369", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0002080 name: heart right ventricle namespace: uberon def: "A cardiac ventricle that is in the right side of the heart." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "cardiac right ventricle" EXACT [] synonym: "right cardiac ventricle" RELATED [EMAPA:17340] synonym: "right ventricle" EXACT [FMA:7098] synonym: "right ventricle of heart" EXACT [] synonym: "ventriculus dexter" RELATED LATIN [http://en.wikipedia.org/wiki/Right_ventricle] xref: BTO:0001630 xref: CALOHA:TS-0443 xref: EHDAA2:0000196 xref: EMAPA:17340 xref: FMA:7098 xref: galen:RightVentricle xref: http://linkedlifedata.com/resource/umls/id/C0225883 xref: http://www.snomedbrowser.com/Codes/Details/244384009 xref: MA:0000093 xref: NCIT:C12870 xref: OpenCyc:Mx4rRMlc0KgNEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA xref: Right:ventricle xref: UMLS:C0225883 {source="ncithesaurus:Right_Ventricle"} xref: VHOG:0000717 is_a: UBERON:0002082 ! cardiac ventricle is_a: UBERON:0035554 ! right cardiac chamber intersection_of: UBERON:0002082 ! cardiac ventricle intersection_of: in_right_side_of UBERON:0000948 ! heart relationship: has_developmental_contribution_from UBERON:0004706 {source="cjm"} ! bulbus cordis property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg property_value: UBPROP:0000001 "The muscular chamber on the right and in front of the left ventricle. It generally receives venous blood from the right atrium and conveys it into the pulmonary artery. [(1988)_Dorian_AF, Amsterdam, Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B._Anatomy, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier's_Encyclopaedic_Dictionary_of_Medicine][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000717", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI property_value: UBPROP:0000008 "In mammals continuous with the pulmonary arteries" xsd:string [Term] id: UBERON:0002081 name: cardiac atrium namespace: uberon def: "Cardiac chamber in which blood enters the heart." [http://en.wikipedia.org/wiki/Heart_atrium, http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "atria" EXACT PLURAL [] synonym: "atrial tissue" RELATED [BTO:0000903] synonym: "atrium" EXACT [ZFA:0000471] synonym: "atrium of heart" EXACT [] synonym: "cardiac atria" EXACT PLURAL [] synonym: "heart atrium" EXACT [] xref: AAO:0010246 xref: BTO:0000903 xref: CALOHA:TS-0437 xref: EFO:0000277 xref: EHDAA2:0000154 xref: EHDAA:1265 xref: EMAPA:16688 xref: EV:0100019 xref: FMA:7099 xref: GAID:555 xref: galen:Atrium xref: Heart:atrium xref: http://linkedlifedata.com/resource/umls/id/C0018792 xref: http://www.snomedbrowser.com/Codes/Details/261405004 xref: MA:0000073 xref: MAT:0000496 xref: MESH:D006325 xref: NCIT:C12728 xref: TAO:0000471 xref: UMLS:C0018792 {source="ncithesaurus:Cardiac_Atrium"} xref: VHOG:0000175 xref: ZFA:0000471 is_a: UBERON:0004151 ! cardiac chamber relationship: contributes_to_morphology_of UBERON:0000948 ! heart property_value: UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000471", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "One of two chambers of the heart which receive blood from the veins and forces it by muscular contration to the ventricle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010246", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "In the primitive vertebrate heart the four chambers are: 1. Sinus venosus (...) 2. Atrium (...) 3. Ventricle (...) 4. Conus arteriosus (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000175", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0721676678 Romer AS, Vertebrate body (1970) p.428"} [Term] id: UBERON:0002082 name: cardiac ventricle namespace: uberon def: "Cardiac chamber through which blood leaves the heart." [http://en.wikipedia.org/wiki/Ventricle_(heart), http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "heart ventricle" EXACT [] synonym: "lower chamber of heart" EXACT [] synonym: "ventricle" BROAD [] synonym: "ventricle of heart" EXACT [] xref: AAO:0010249 xref: BTO:0000862 xref: CALOHA:TS-0444 xref: EFO:0000317 xref: EHDAA2:0004164 xref: EHDAA:1912 xref: EMAPA:17331 xref: EV:0100020 xref: FMA:7100 xref: GAID:568 xref: galen:Ventricle xref: http://linkedlifedata.com/resource/umls/id/C0018827 xref: http://www.snomedbrowser.com/Codes/Details/277699000 xref: MA:0000091 xref: MAT:0000497 xref: MESH:D006352 xref: NCIT:C12730 xref: OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA xref: TAO:0000009 xref: UMLS:C0018827 {source="ncithesaurus:Cardiac_Ventricle"} xref: Ventricle:(heart) xref: VHOG:0000435 xref: XAO:0003193 xref: ZFA:0000009 is_a: UBERON:0004151 ! cardiac chamber relationship: contributes_to_morphology_of UBERON:0000948 ! heart property_value: UBPROP:0000001 "A chamber of the heart that receives blood from one or more atria and pumps it by muscular contraction into the arteries.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010249", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000009", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "In the primitive vertebrate heart the four chambers are: 1. Sinus venosus (...) 2. Atrium (...) 3. Ventricle (...) 4. Conus arteriosus (...)[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000435", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0721676678 Romer AS, Vertebrate body (1970) p.428"} [Term] id: UBERON:0002083 name: ductus venosus namespace: uberon def: "The vascular channel in the fetus passing through the liver and joining the umbilical vein with the inferior vena cava." [VHOG:0000924] subset: pheno_slim subset: uberon_slim xref: Ductus:venosus xref: EHDAA2:0000422 xref: EHDAA:5402 xref: EMAPA:17343 xref: FMA:71007 xref: http://linkedlifedata.com/resource/umls/id/C1288338 xref: http://www.snomedbrowser.com/Codes/Details/304829005 xref: MA:0002111 xref: NCIT:C34143 xref: UMLS:C1288338 {source="ncithesaurus:Ductus_Venosus"} xref: VHOG:0000924 is_a: UBERON:0001638 {source="EHDAA2"} ! vein relationship: branching_part_of UBERON:0005459 {source="cjm"} ! left umbilical vein relationship: develops_from UBERON:0005459 {source="EHDAA2"} ! left umbilical vein relationship: part_of UBERON:0005459 ! left umbilical vein relationship: part_of UBERON:0011695 ! embryonic cardiovascular system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png property_value: IAO:0000116 "add class for fetal shunt?" xsd:string property_value: UBPROP:0000001 "The vascular channel in the fetus passing through the liver and joining the umbilical vein with the inferior vena cava. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000924", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/ductus+venosus"} property_value: UBPROP:0000008 "Ductus venosus naturally closes during the first week of life in most full-term neonates; however, it may take much longer to close in pre-term neonates. Functional closure occurs within minutes of birth. Structural closure in term babies occurs within 3 to 7 days. After it closes, the remnant is known as ligamentum venosum" xsd:string {source="WP"} [Term] id: UBERON:0002084 name: heart left ventricle namespace: uberon def: "A cardiac ventricle that is in the left side of the heart." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "cardiac left ventricle" EXACT [] synonym: "left cardiac ventricle" EXACT [] synonym: "left ventricle" EXACT [FMA:7101] synonym: "left ventricle of heart" EXACT [] synonym: "ventriculus sinister cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Left_ventricle] xref: BTO:0001629 xref: CALOHA:TS-0439 xref: EHDAA2:0002178 xref: EMAPA:17337 xref: FMA:7101 xref: galen:LeftVentricle xref: http://linkedlifedata.com/resource/umls/id/C0225897 xref: http://www.snomedbrowser.com/Codes/Details/244385005 xref: Left:ventricle xref: MA:0000092 xref: NCIT:C12871 xref: OpenCyc:Mx4rtW8v46gEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA xref: UMLS:C0225897 {source="ncithesaurus:Left_Ventricle"} xref: VHOG:0000718 is_a: UBERON:0002082 ! cardiac ventricle is_a: UBERON:0035553 ! left cardiac chamber intersection_of: UBERON:0002082 ! cardiac ventricle intersection_of: in_left_side_of UBERON:0000948 ! heart relationship: continuous_with UBERON:0000947 ! aorta property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg property_value: UBPROP:0000001 "Thick-walled muscular chamber constituting the left border and apex of the heart. It receives oxygenated blood from the left atrium through the mitral orifice and send it off into the aorta. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000718", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "The vertebrate heart initially forms as a tube from a population of precursor cells termed the first heart field (FHF). Cells from the adjacent second heart field (SHF) are then progressively added to the developing heart. In avian and mammalian hearts, the FHF contributes mainly to the left ventricle, whereas the SHF gives rise to the outflow tract and large portions of the right ventricle and atria. Both fields arise from common mesodermal progenitors, although the detailed lineage relationships between FHF and SHF remain uncertain.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000718", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1126/science.1190181 Stolfi A, Gainous TB, Young JJ, Mori A, Levine M, Christiaen L, Early chordate origins of the vertebrate second heart field. Science (2010)"} property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI property_value: UBPROP:0000008 "In mammals continuous with aorta" xsd:string [Term] id: UBERON:0002085 name: interatrial septum namespace: uberon def: "A cardiac septum that divides the left and right atria of the heart." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "atrial septum" EXACT [] synonym: "atrium septum" EXACT [] synonym: "interatrial septal wall" EXACT [] xref: EHDAA2:0000838 xref: EHDAA:1896 xref: EMAPA:17011 xref: FMA:7108 xref: galen:InteratrialSeptum xref: http://linkedlifedata.com/resource/umls/id/C0225836 xref: http://www.snomedbrowser.com/Codes/Details/362016003 xref: Interatrial:septum xref: MA:0000084 xref: NCIT:C32818 xref: OpenCyc:Mx4rpd49nLYEEduAAAACs2IKfQ xref: OpenCyc:Mx4rwGvku5wpEbGdrcN5Y29ycA xref: UMLS:C0225836 {source="ncithesaurus:Interatrial_Septum"} xref: VHOG:0000385 is_a: UBERON:0002099 ! cardiac septum intersection_of: UBERON:0002099 ! cardiac septum intersection_of: adjacent_to UBERON:0002078 ! right cardiac atrium intersection_of: adjacent_to UBERON:0002079 ! left cardiac atrium relationship: adjacent_to UBERON:0002078 ! right cardiac atrium relationship: adjacent_to UBERON:0002079 ! left cardiac atrium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png property_value: UBPROP:0000001 "The partition separating the right and left atria of the heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000385", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/interatrial+septum"} property_value: UBPROP:0000003 "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000385", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} [Term] id: UBERON:0002086 name: sinoatrial valve namespace: uberon def: "A valve at the opening of the sinus venosus into the primordial atrium[TFD,modified]" [http://medical-dictionary.thefreedictionary.com/sinoatrial+valve] subset: pheno_slim subset: vertebrate_core synonym: "sinoatrial valves" RELATED PLURAL [ZFA:0000680] synonym: "sinuatrial valve" EXACT [MP:0011646] xref: FMA:71120 xref: TAO:0000680 xref: ZFA:0000680 is_a: UBERON:0000946 ! cardial valve relationship: connects UBERON:0002063 {source="ZFA-modified"} ! sinus venosus relationship: connects UBERON:0002081 {source="ZFA-modified"} ! cardiac atrium property_value: IAO:0000232 "in humans and mouse this is the opening from SV into right atrium. This class represents the valve connecting the SV to any atrium and is applicable to animals with a single atrium" xsd:string [Term] id: UBERON:0002087 name: atrioventricular canal namespace: uberon def: "The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]." [http://en.wikipedia.org/wiki/Atrioventricular_canal, https://github.com/obophenotype/uberon/issues/38, ZFA:0001315] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "atrial canal" EXACT [http://en.wikipedia.org/wiki/Atrial_canal] synonym: "atrio-ventricular canal" EXACT [EHDAA2:0000152] synonym: "AV canal" EXACT [] synonym: "AVC" EXACT ABBREVIATION [ZFA:0001315] synonym: "canalis atrioventricularis" RELATED LATIN [http://en.wikipedia.org/wiki/Atrioventricular_canal] synonym: "ependymal canal" RELATED [EMAPA:16546] xref: Atrioventricular:canal xref: EHDAA:764 xref: EMAPA:16546 xref: FMA:71121 xref: http://www.snomedbrowser.com/Codes/Details/341079007 xref: TAO:0001315 xref: VHOG:0001473 xref: XAO:0004123 xref: ZFA:0001315 relationship: connects UBERON:0002081 ! cardiac atrium relationship: connects UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0011820 {source="EHDAA2"} ! atrioventricular region property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray464.png property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/rfoulger property_value: UBPROP:0000001 "The canal connecting the primitive atrium and ventricle in fishes and amniotes embryo. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001473", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/atrioventricular+canal"} property_value: UBPROP:0000003 "The heart is the first organ to form and function in a vertebrate. (...) Septation of the AV canal is initiated with the formation of inferior and superior endocardial cushions in response to signaling from the overlying myocardium. (...) Analysis of zebrafish mutants with cardiovascular defects uncovered a previously unexpected level of conservation between zebrafish and human cardiovascular physiology.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001473", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1016/j.ddmec.2004.08.004 Haramis APG, Clevers HC, Holehearted: genetic approaches to congenital cardiac valve malformations. Drug Discovery Today: Disease Mechanisms (2004)"} property_value: UBPROP:0000009 "In the embryo, the atrioventricular canal delays the impulse from atrium to ventricle[PMID:22984480]" xsd:string property_value: UBPROP:0000011 "The right side of the AVC becomes the tricuspid valve whereas the left side of the AVC will become the bicuspid valve" xsd:string property_value: UBPROP:0000012 "this is a lumen in EHDAA2" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0002088 name: lateral thoracic vein namespace: uberon def: "The lateral thoracic vein is a tributary of the axillary vein. It runs with the lateral thoracic artery and drains the serratus ventralis muscle and the Pectoralis major muscle. Normally, the thoracoepigastric vein exists between this vein and superficial epigastric vein (a tributary of femoral vein), to act as a shunt for blood if the portal system (through the liver) develops hypertension or a blockage. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_thoracic_vein] subset: uberon_slim synonym: "vena thoracica lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_thoracic_vein] xref: EMAPA:37163 {source="MA:th"} xref: FMA:71210 xref: http://en.wikipedia.org/wiki/Lateral_thoracic_vein xref: http://www.snomedbrowser.com/Codes/Details/53595001 xref: MA:0002162 is_a: UBERON:0005194 ! thoracic vein relationship: part_of UBERON:0000985 ! axillary vein relationship: part_of UBERON:0001587 ! subclavian vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png [Term] id: UBERON:0002089 name: thoracodorsal vein namespace: uberon def: "companion vein of the thoracodorsal artery, draining the apical part of the latissimus dorsi and merging with the circumflex scapular vein to form a subscapular vein" [http://www.medilexicon.com/medicaldictionary.php?t=97559] xref: EMAPA:37198 {source="MA:th"} xref: FMA:71213 xref: MA:0002238 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0000985 ! axillary vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein [Term] id: UBERON:0002094 name: interventricular septum namespace: uberon def: "Cardiac septum which separates the right ventricle from the left ventricle.[FMA]" [FMA:7133] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "heart interventricular septum" EXACT [MA:0000085] synonym: "heart ventricular septum" EXACT [MA:0000085] synonym: "interventricular septum of heart" RELATED [BTO:0002483] synonym: "interventriculare cordis" RELATED [BTO:0002483] synonym: "intraventricular septum" RELATED [http://en.wikipedia.org/wiki/Interventricular_septum] synonym: "s. interventriculare cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Interventricular_septum] synonym: "septum inferius" RELATED [http://en.wikipedia.org/wiki/Interventricular_septum] synonym: "septum membranaceum" RELATED [http://en.wikipedia.org/wiki/Interventricular_septum] synonym: "ventricle septum" RELATED [] synonym: "ventricular septum" RELATED [http://en.wikipedia.org/wiki/Interventricular_septum] synonym: "ventricular septum" RELATED [MA:0000085] xref: BTO:0002483 xref: EFO:0001956 xref: EHDAA:2603 xref: EMAPA:17333 xref: FMA:7133 xref: galen:InterventricularSeptum xref: http://linkedlifedata.com/resource/umls/id/C0225870 xref: http://www.snomedbrowser.com/Codes/Details/362019005 xref: Interventricular:septum xref: MA:0000085 xref: NCIT:C32874 xref: OpenCyc:Mx4rwA7lp5wpEbGdrcN5Y29ycA xref: UMLS:C0225870 {source="ncithesaurus:Interventricular_Septum"} xref: VHOG:0000386 is_a: UBERON:0002099 ! cardiac septum intersection_of: UBERON:0002099 ! cardiac septum intersection_of: adjacent_to UBERON:0002080 ! heart right ventricle intersection_of: adjacent_to UBERON:0002084 ! heart left ventricle relationship: adjacent_to UBERON:0002080 ! heart right ventricle relationship: adjacent_to UBERON:0002084 ! heart left ventricle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png property_value: UBPROP:0000001 "The partition separating the right and left ventricles of the heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000386", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/interventricular+septum"} property_value: UBPROP:0000003 "The two most progressive vertebrate classes, the birds and mammals, have completed the ventricular septum and at long last have completely separated the two blood streams along the length of the major heart chambers. This development has obviously been brought about independently in the two cases, since mammals and birds have evolved independently from primitive reptiles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000386", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0721676678 Romer AS, Vertebrate body (1970) p.430"} property_value: UBPROP:0000011 "involves the recruitment of myocardial cells as well as of non- muscular mesenchymal cells (Kaufman and Bard, 1999)" xsd:string {source="ISBN:0124020607"} [Term] id: UBERON:0002098 name: apex of heart namespace: uberon def: "The apex of the heart is the lowest superficial part of the heart. It is directed downward, forward, and to the left, and is overlapped by the left lung and pleura. [WP,unvetted]." [http://en.wikipedia.org/wiki/Apex_of_the_heart] subset: pheno_slim subset: uberon_slim synonym: "apex cordis" EXACT LATIN [] synonym: "cardiac apex" EXACT [FMA:7164] synonym: "heart apex" EXACT [] xref: FMA:7164 xref: http://en.wikipedia.org/wiki/Apex_of_the_heart xref: http://linkedlifedata.com/resource/umls/id/C0225811 xref: http://www.snomedbrowser.com/Codes/Details/362009004 xref: MA:0000488 xref: NCIT:C32126 xref: UMLS:C0225811 {source="ncithesaurus:Apex_of_the_Heart"} relationship: part_of UBERON:0000948 ! heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png property_value: UBPROP:0000012 "FMA also has terms for the apical zone" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002099 name: cardiac septum namespace: uberon def: "The thin membranous structure between the two heart atria or the thick muscular structure between the two heart ventricles." [MESH:A07.541.459] subset: pheno_slim subset: uberon_slim synonym: "cardiac septa" EXACT PLURAL [] synonym: "heart septa" EXACT PLURAL [] synonym: "heart septum" EXACT [] synonym: "septum of heart" EXACT [] synonym: "spiral septa" RELATED PLURAL [XAO:0004141] xref: EMAPA:35400 xref: FMA:7180 xref: GAID:562 xref: http://linkedlifedata.com/resource/umls/id/C0018819 xref: http://www.snomedbrowser.com/Codes/Details/362014000 xref: MA:0000083 xref: MESH:D006346 xref: NCIT:C49485 xref: UMLS:C0018819 {source="ncithesaurus:Heart_Septum"} xref: XAO:0004141 relationship: adjacent_to UBERON:0004151 ! cardiac chamber relationship: contributes_to_morphology_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart property_value: UBPROP:0000008 "'Terrestrial vertebrates have divided hearts in which septae separate the oxygenated and deoxygenated blood within the pulmonary and systemic circulations'" xsd:string property_value: UBPROP:0000012 "in GO, septum morphogenesis is part of cardiac chamber morphogenesis; need to add axioms to infer this" xsd:string {external_ontology="GO"} [Term] id: UBERON:0002111 name: artery smooth muscle tissue namespace: uberon def: "A portion of smooth muscle tissue that is part of an artery [Automatically generated definition]." [OBOL:automatic] synonym: "arterial smooth muscle" EXACT [BTO:0000087] synonym: "arterial smooth muscle cell" RELATED [BTO:0000087] synonym: "artery smooth muscle" EXACT [] synonym: "artery smooth muscle tissue" EXACT [] synonym: "smooth muscle of artery" EXACT [FMA:72024] xref: BTO:0000087 xref: CALOHA:TS-1198 xref: EMAPA:36285 xref: FMA:72024 xref: http://linkedlifedata.com/resource/umls/id/C1706851 xref: MA:0000708 xref: NCIT:C49195 xref: UMLS:C1706851 {source="ncithesaurus:Artery_Smooth_Muscle_Tissue"} is_a: UBERON:0004237 ! blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle relationship: part_of UBERON:0001637 ! artery [Term] id: UBERON:0002133 name: atrioventricular valve namespace: uberon def: "A cardial valve in the atrioventricular region that separates the atrium from the ventricle and prevent backflow from the ventricles into the atria during systole." [http://en.wikipedia.org/wiki/Heart_valve#Atrioventricular_valves, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: vertebrate_core synonym: "atrio-ventricular valve" RELATED [EMAPA:35154] synonym: "AV valve" EXACT [] xref: Atrioventricular_valves xref: EHDAA2:0000153 xref: EHDAA:7421 xref: EMAPA:35154 xref: FMA:7233 xref: galen:AtrioventricularValve xref: http://www.snomedbrowser.com/Codes/Details/11124005 xref: MA:0002789 xref: OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg xref: TAO:0005064 xref: VHOG:0001472 xref: ZFA:0005064 is_a: UBERON:0000946 ! cardial valve relationship: attaches_to UBERON:0004292 {source="FMA"} ! cardiac skeleton relationship: connects UBERON:0002081 ! cardiac atrium relationship: connects UBERON:0002082 ! cardiac ventricle relationship: has_part UBERON:0005994 ! chorda tendineae relationship: part_of UBERON:0011820 {source="EHDAA2"} ! atrioventricular region property_value: UBPROP:0000001 "The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005064", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Valve in the heart through which blood flows from the atria to the ventricles. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001472", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/atrioventricular+valve"} property_value: UBPROP:0000003 "The conus arteriosus is the most distal part of the primitive fish heart and forms the connection between the ventricle and the ventral aorta. At the sinoatrial, the atrioventricular, and the ventriculoconal junctions, valves developed to prevent backflow of blood during relaxation of the preceding compartment.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001472", ontology="VHOG", source="http://bgee.unil.ch/", source="https://doi.org/10.1152/physrev.00006.2003"} property_value: UBPROP:0000012 "in ZFA this is part of both atrium and ventricle, but we use a connecting relationship here; see also notes for left and right." xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0002134 name: tricuspid valve namespace: uberon def: "An atrioventricular valve that is part of the outflow part of the right atrium." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "right atrioventricular valve" EXACT [FMA:7234] synonym: "valva atrioventricularis dextra" EXACT LATIN [FMA:7234, FMA:TA] synonym: "valvula tricuspidalis" RELATED LATIN [http://en.wikipedia.org/wiki/Tricuspid_valve] xref: EHDAA2:0004029 xref: EHDAA:7427 xref: EMAPA:17873 xref: FMA:7234 xref: GAID:567 xref: galen:TricuspidValve xref: http://linkedlifedata.com/resource/umls/id/C0040960 xref: http://www.snomedbrowser.com/Codes/Details/181288007 xref: MA:0000090 xref: MESH:D014261 xref: NCIT:C12805 xref: OpenCyc:Mx4rvuWAAJwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0002081 xref: Tricuspid:valve xref: UMLS:C0040960 {source="ncithesaurus:Tricuspid_Valve"} xref: VHOG:0000816 is_a: UBERON:0002133 ! atrioventricular valve is_a: UBERON:0005208 ! right atrium valve intersection_of: UBERON:0002133 ! atrioventricular valve intersection_of: part_of UBERON:0005965 ! outflow part of right atrium relationship: connects UBERON:0002078 ! right cardiac atrium relationship: connects UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0005965 ! outflow part of right atrium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg property_value: UBPROP:0000001 "The three-segmented valve of the heart that keeps blood in the right ventricle from flowing back into the right atrium. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000816", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/Tricuspid+valves"} property_value: UBPROP:0000003 "The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000816", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)"} property_value: UBPROP:0000012 "FMA part_ofs changed to connects" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002135 name: mitral valve namespace: uberon def: "An atrioventricular valve that is part of the outflow part of the left atrium." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "bicuspid valve" RELATED [] synonym: "left atrioventricular valve" EXACT [] synonym: "valva atrioventricularis sinistra" EXACT LATIN [FMA:7235, FMA:TA] synonym: "valva mitralis" RELATED LATIN [http://en.wikipedia.org/wiki/Mitral_valve] xref: EFO:0003933 xref: EHDAA2:0000168 xref: EMAPA:17871 xref: FMA:7235 xref: GAID:565 xref: galen:MitralValve xref: http://linkedlifedata.com/resource/umls/id/C0026264 xref: http://www.snomedbrowser.com/Codes/Details/181286006 xref: MA:0000088 xref: MESH:D008943 xref: Mitral:valve xref: NCIT:C12753 xref: OpenCyc:Mx4rv4l2nJwpEbGdrcN5Y29ycA xref: UMLS:C0026264 {source="ncithesaurus:Mitral_Valve"} xref: VHOG:0000817 is_a: UBERON:0002133 ! atrioventricular valve intersection_of: UBERON:0002133 ! atrioventricular valve intersection_of: part_of UBERON:0005966 ! outflow part of left atrium relationship: attaches_to UBERON:0005995 {source="FMA"} ! mitral valve anulus relationship: connects UBERON:0002079 {source="FMA"} ! left cardiac atrium relationship: connects UBERON:0002084 {source="FMA"} ! heart left ventricle relationship: part_of UBERON:0005966 ! outflow part of left atrium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg property_value: UBPROP:0000001 "A valve of the heart, composed of two triangular flaps, that is located between the left atrium and left ventricle and regulates blood flow between these chambers. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000817", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/mitral+valve"} property_value: UBPROP:0000003 "The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000817", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)"} property_value: UBPROP:0000012 "FMA part_ofs changed to connects" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002137 name: aortic valve namespace: uberon def: "Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Aortic_valve] comment: Human variation: It is normally tricuspid (with three leaflets), although in 1% of the population it is found to be congenitally bicuspid (two leaflets) subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "valva aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Aortic_valve] xref: Aortic:valve xref: BTO:0004628 xref: EFO:0003879 xref: EHDAA2:0000134 xref: EHDAA:4410 xref: EMAPA:17870 xref: FMA:7236 xref: GAID:563 xref: galen:AorticValve xref: http://linkedlifedata.com/resource/umls/id/C0003501 xref: http://www.snomedbrowser.com/Codes/Details/181287002 xref: MA:0000087 xref: MESH:D001021 xref: NCIT:C12670 xref: OpenCyc:Mx4rv5914JwpEbGdrcN5Y29ycA xref: UMLS:C0003501 {source="ncithesaurus:Aortic_Valve"} xref: VHOG:0000815 is_a: UBERON:0005623 {source="MA"} ! semi-lunar valve relationship: part_of UBERON:0005956 ! outflow part of left ventricle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg property_value: UBPROP:0000001 "The valve between the left ventricle of the heart and the ascending aorta, consisting of three semilunar cusps. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000815", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/aortic+valve"} [Term] id: UBERON:0002146 name: pulmonary valve namespace: uberon def: "the semilunar valve of the heart that lies between the right ventricle and the pulmonary artery." [http://en.wikipedia.org/wiki/Pulmonary_valve] subset: pheno_slim subset: uberon_slim synonym: "pulmonic valve" EXACT [] synonym: "valva trunci pulmonalis" RELATED LATIN [http://en.wikipedia.org/wiki/Pulmonary_valve] xref: EHDAA2:0001577 xref: EHDAA:4412 xref: EMAPA:17872 xref: FMA:7246 xref: GAID:566 xref: galen:PulmonaryValve xref: http://linkedlifedata.com/resource/umls/id/C0034086 xref: http://www.snomedbrowser.com/Codes/Details/181289004 xref: MA:0000089 xref: MESH:D011664 xref: NCIT:C12775 xref: OpenCyc:Mx4rwP6uq5wpEbGdrcN5Y29ycA xref: Pulmonary:valve xref: UMLS:C0034086 {source="ncithesaurus:Pulmonary_Valve"} xref: VHOG:0000814 is_a: UBERON:0005623 ! semi-lunar valve intersection_of: UBERON:0005623 ! semi-lunar valve intersection_of: connects UBERON:0002012 ! pulmonary artery intersection_of: connects UBERON:0002082 ! cardiac ventricle relationship: connects UBERON:0002012 ! pulmonary artery relationship: connects UBERON:0002082 ! cardiac ventricle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg property_value: UBPROP:0000001 "The valve with semilunar cusps at the entrance to the pulmonary trunk from the right ventricle of the heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000814", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+valve"} [Term] id: UBERON:0002165 name: endocardium namespace: uberon alt_id: UBERON:0006225 def: "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]." [GO:0003157] comment: fixed in GO to reflect FMA. See email to David/Varsha June 18 2010 subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "endocardial lining" EXACT [EMAPA:32686] synonym: "endocardial tissue" EXACT [EMAPA:17868] synonym: "heart endocardial tissue" RELATED [VHOG:0000084] synonym: "heart endocardium" EXACT [] xref: AAO:0010408 xref: BTO:0000387 xref: CALOHA:TS-2075 xref: EFO:0000821 xref: EHDAA2:0004153 xref: EMAPA:17868 xref: EMAPA:32686 xref: EV:0100021 xref: FMA:7280 xref: GAID:550 xref: galen:Endocardium xref: http://en.wikipedia.org/wiki/Endocardium xref: http://linkedlifedata.com/resource/umls/id/C0014124 xref: http://www.snomedbrowser.com/Codes/Details/362013006 xref: MA:0000076 xref: MAT:0000455 xref: MESH:D004699 xref: NCIT:C13004 xref: OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw xref: TAO:0001320 xref: UMLS:C0014124 {source="ncithesaurus:Endocardium"} xref: VHOG:0000084 xref: XAO:0000066 xref: ZFA:0001320 is_a: UBERON:0005983 ! heart layer relationship: has_part UBERON:0005316 ! endocardial endothelium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png property_value: UBPROP:0000001 "Layer that lines the lumen of the heart.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001320", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010408", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber." xsd:string {source="FMA:7280"} [Term] id: UBERON:0002166 name: endocardium of atrium namespace: uberon def: "Endocardium that is part of the atrium." [ZFIN:curator] subset: pheno_slim subset: vertebrate_core synonym: "atrial endocardium" EXACT [] synonym: "atrium endocardial tissue" RELATED [VHOG:0000606] synonym: "atrium endocardium" EXACT [] synonym: "atrium of heart endocardium" EXACT [OBOL:automatic] synonym: "Cardiac atria endocardium" EXACT [OBOL:automatic] synonym: "cardiac atrium endocardium" EXACT [OBOL:automatic] synonym: "endocardium of atrium of heart" EXACT [OBOL:automatic] synonym: "endocardium of Cardiac atria" EXACT [OBOL:automatic] synonym: "endocardium of cardiac atrium" EXACT [OBOL:automatic] synonym: "endocardium of heart atrium" EXACT [OBOL:automatic] synonym: "heart atrium endocardium" EXACT [OBOL:automatic] xref: EMAPA:32745 xref: FMA:7284 xref: http://www.snomedbrowser.com/Codes/Details/192001005 xref: MA:0000077 xref: TAO:0002169 xref: VHOG:0000606 xref: ZFA:0001614 is_a: UBERON:0002165 ! endocardium intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: contributes_to_morphology_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0002200 name: vasculature of head namespace: uberon def: "Vasculature that is part of a head [Automatically generated definition]." [OBOL:automatic] subset: efo_slim subset: vertebrate_core synonym: "adult head vascular network" EXACT [OBOL:automatic] synonym: "adult head vasculature" EXACT [OBOL:automatic] synonym: "cranial vasculature" EXACT [] synonym: "head vascular network" EXACT [OBOL:automatic] synonym: "head vasculature" RELATED [] synonym: "vascular network of adult head" EXACT [OBOL:automatic] synonym: "vascular network of head" EXACT [OBOL:automatic] synonym: "vasculature of adult head" EXACT [OBOL:automatic] xref: EFO:0003656 xref: FMA:74710 xref: TAO:0001267 xref: XAO:0004152 xref: ZFA:0001267 is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0002201 name: vasculature of trunk namespace: uberon def: "A vasculature that is part of a trunk [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "torso vascular network" EXACT [OBOL:automatic] synonym: "torso vasculature" EXACT [OBOL:automatic] synonym: "trunk vascular network" EXACT [OBOL:automatic] synonym: "trunk vasculature" EXACT [] synonym: "vascular network of torso" EXACT [OBOL:automatic] synonym: "vascular network of trunk" EXACT [OBOL:automatic] synonym: "vasculature of torso" EXACT [OBOL:automatic] xref: FMA:74712 xref: TAO:0005024 xref: ZFA:0005024 is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0002203 name: vasculature of eye namespace: uberon def: "Vasculature that is part of the eye region." [https://sourceforge.net/tracker/?func=detail&aid=3489658&group_id=76834&atid=994726, OBOL:automatic] subset: pheno_slim subset: vertebrate_core synonym: "eye vascular network" EXACT [OBOL:automatic] synonym: "eye vasculature" RELATED [] synonym: "ocular blood vessel" EXACT [ZFA:0007057] synonym: "ocular vasculature" EXACT [] synonym: "optic vasculature" RELATED [] synonym: "vascular network of eye" EXACT [OBOL:automatic] xref: FMA:74743 xref: http://www.snomedbrowser.com/Codes/Details/123846009 xref: TAO:0007057 xref: ZFA:0007057 is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0006876 ! vasculature of organ property_value: UBPROP:0000012 "not part of the eye in ZFA. Note this changed to a blood vessel in ZFA" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0002243 name: cutaneous vein namespace: uberon def: "one of a number of veins in the subcutaneous tissue that empty into deep veins" [http://www.thefreedictionary.com/cutaneous+vein] xref: EMAPA:37506 {source="MA:th"} xref: FMA:76720 xref: http://linkedlifedata.com/resource/umls/id/C1185726 xref: MA:0002098 xref: NCIT:C53041 xref: UMLS:C1185726 {source="ncithesaurus:Cutaneous_Vein"} is_a: UBERON:0001638 ! vein property_value: UBPROP:0000012 "GAT in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002248 name: transverse pericardial sinus namespace: uberon def: "The passage between the venous and arterial mesocardia -i.e., between the aorta and pulmonary artery in front and the superior vena cava behind. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside.[WP,unvetted]." [http://en.wikipedia.org/wiki/Pericardial_sinus] subset: uberon_slim synonym: "Thiele's canal" EXACT [FMA:77132] synonym: "transverse sinus" BROAD [] synonym: "transverse sinus of pericardial cavity" EXACT [FMA:77132] xref: EHDAA2:0002077 xref: EHDAA:796 xref: EMAPA:16214 xref: FMA:77132 xref: MA:0001880 xref: Pericardial:sinus is_a: UBERON:0010279 ! pericardial sinus relationship: part_of UBERON:0005601 {source="MA"} ! dorsal mesocardium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png [Term] id: UBERON:0002249 name: median artery namespace: uberon def: "An artery found in the forearm, between the radial artery and ulnar artery. It runs with the median nerve and supplies the same structures as that nerve. It may be unilateral or bilater" [http://en.wikipedia.org/wiki/Median_artery] xref: EMAPA:37103 {source="MA:th"} xref: FMA:77142 xref: http://linkedlifedata.com/resource/umls/id/C0687034 xref: MA:0001999 xref: Median:artery xref: NCIT:C52970 xref: UMLS:C0687034 {source="ncithesaurus:Median_Artery"} is_a: UBERON:0001637 ! artery is_a: UBERON:0004259 ! lower arm blood vessel [Term] id: UBERON:0002250 name: popliteal artery namespace: uberon def: "The continuation of the femoral artery coursing through the popliteal fossa; it divides into the anterior and posterior tibial arteries." [MESH:A07.231.114.681] subset: uberon_slim synonym: "arteria poplitea" RELATED LATIN [http://en.wikipedia.org/wiki/Popliteal_artery] xref: EMAPA:37109 {source="MA:th"} xref: FMA:77155 xref: GAID:504 xref: http://linkedlifedata.com/resource/umls/id/C0032649 xref: http://www.snomedbrowser.com/Codes/Details/181350008 xref: MA:0002021 xref: MESH:D011150 xref: NCIT:C33337 xref: OpenCyc:Mx4rvduV6pwpEbGdrcN5Y29ycA xref: Popliteal:artery xref: UMLS:C0032649 {source="ncithesaurus:Popliteal_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0002060 ! femoral artery relationship: part_of UBERON:0002060 ! femoral artery property_value: depicted:by Popliteal:artery.png [Term] id: UBERON:0002270 name: hyaloid artery namespace: uberon def: "An artery that is part of the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens." [http://en.wikipedia.org/wiki/Hyaloid_artery] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria hyaloidea" EXACT LATIN [http://en.wikipedia.org/wiki/Hyaloid_artery] synonym: "central artery of retina" RELATED [EMAPA:19242] synonym: "Cloquet's canal" RELATED [http://en.wikipedia.org/wiki/Hyaloid_artery] synonym: "Cloquets canal" RELATED [http://en.wikipedia.org/wiki/Hyaloid_artery] synonym: "hyaloid arteries" RELATED PLURAL [ZFA:0005045] xref: EHDAA2:0004072 xref: EMAPA:19242 xref: FMA:77670 xref: http://www.snomedbrowser.com/Codes/Details/308790003 xref: Hyaloid:artery xref: TAO:0005045 xref: VHOG:0001478 xref: XAO:0004155 xref: ZFA:0005045 is_a: UBERON:0001637 {source="ZFA"} ! artery is_a: UBERON:0003499 ! brain blood vessel is_a: UBERON:0005492 ! hyaloid vessel relationship: develops_from UBERON:0001619 {source="EHDAA2"} ! ophthalmic artery relationship: located_in UBERON:0005606 {source="EHDAA2"} ! hyaloid cavity property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg property_value: UBPROP:0000001 "Artery that is internal to the eye. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005045", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "In humans, Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as 'floaters'. An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla" xsd:string [Term] id: UBERON:0002288 name: choroid plexus of third ventricle namespace: uberon def: "Part of choroid plexus contained in the third ventricle" [NLX:18606] subset: vertebrate_core synonym: "3rd ventricle choroid plexus" RELATED [] synonym: "chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of third ventricle" EXACT [] synonym: "choroid plexus third ventricle" EXACT [ZFA:0001444] synonym: "diencephalic choroid plexus" EXACT [ZFA:0001444] synonym: "third ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "third ventricle choroid plexus" EXACT [] xref: BAMS:chp3 xref: BAMS:cp3v xref: EMAPA:18543 xref: FMA:78462 xref: HBA:9709 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=452 xref: http://linkedlifedata.com/resource/umls/id/C0152291 xref: http://www.snomedbrowser.com/Codes/Details/61576002 xref: MA:0000879 xref: NCIT:C49782 xref: NLX:18606 xref: TAO:0001444 xref: UMLS:C0152291 {source="ncithesaurus:Choroid_Plexus_of_the_Third_Ventricle"} xref: VHOG:0001374 xref: ZFA:0001444 is_a: UBERON:0001886 ! choroid plexus [Term] id: UBERON:0002290 name: choroid plexus of fourth ventricle namespace: uberon def: "Choroid plexus of the fourth ventricle" [NLX:27388] subset: vertebrate_core synonym: "4th ventricle choroid plexus" RELATED [] synonym: "chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of fourth ventricle" EXACT [] synonym: "choroid plexus fourth ventricle" EXACT [ZFA:0001446] synonym: "fourth ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "fourth ventricle choroid plexus" EXACT [] xref: BAMS:chp4 xref: BAMS:cp4v xref: DHBA:12808 xref: EMAPA:32742 xref: FMA:78492 xref: HBA:9710 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=638 xref: http://linkedlifedata.com/resource/umls/id/C0152293 xref: http://www.snomedbrowser.com/Codes/Details/42214001 xref: MA:0000983 xref: NCIT:C32308 xref: NLX:27388 xref: TAO:0001446 xref: UMLS:C0152293 {source="ncithesaurus:Choroid_Plexus_of_the_Fourth_Ventricle"} xref: VHOG:0001375 xref: ZFA:0001446 is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0006694 ! cerebellum vasculature [Term] id: UBERON:0002302 name: myocardium of atrium namespace: uberon def: "the atrial part of middle layer of the heart, comprised of involuntary muscle" [ISBN:0-683-40008-8, MP:0010493] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "atrial myocardium" EXACT [ZFA:0001374] synonym: "atrium cardiac muscle" RELATED [VHOG:0000602] synonym: "atrium myocardium" EXACT [] xref: EFO:0003087 xref: EMAPA:32746 xref: FMA:83509 xref: http://www.snomedbrowser.com/Codes/Details/191910002 xref: MA:0000081 xref: TAO:0001374 xref: VHOG:0000602 xref: ZFA:0001374 is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: contributes_to_morphology_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium property_value: UBPROP:0000003 "As noted, the hearts of birds and mammals have four chambers that arises from the two chambers (atrium and ventricle) of the fish heart.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000602", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.481"} [Term] id: UBERON:0002307 name: choroid plexus of lateral ventricle namespace: uberon def: "Part of choroid plexus contained in the lateral ventricle" [NLX:32548] subset: vertebrate_core synonym: "chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of lateral ventricle" EXACT [] synonym: "choroid plexus telencephalic ventricle" EXACT [ZFA:0001447] synonym: "lateral ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "lateral ventricle choroid plexus" EXACT [] xref: BAMS:cplv xref: DHBA:10601 xref: EHDAA2:0004449 xref: EMAPA:17769 xref: FMA:83711 xref: HBA:9708 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=218 xref: http://linkedlifedata.com/resource/umls/id/C0152289 xref: http://www.snomedbrowser.com/Codes/Details/70064002 xref: MA:0000961 xref: NCIT:C32309 xref: NLX:32548 xref: TAO:0001447 xref: UMLS:C0152289 {source="ncithesaurus:Choroid_Plexus_of_the_Lateral_Ventricle"} xref: VHOG:0001376 xref: ZFA:0001447 is_a: UBERON:0001886 ! choroid plexus [Term] id: UBERON:0002320 name: glomerular mesangium namespace: uberon def: "A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (MUSCLE, SMOOTH, VASCULAR), PHAGOCYTES and the mesangial EXTRACELLULAR MATRIX." [http://en.wikipedia.org/wiki/Glomerular_mesangium, MESH:A05.810.453.736.520.380] subset: pheno_slim subset: uberon_slim xref: EMAPA:27961 xref: EMAPA:28248 xref: FMA:84140 xref: GAID:430 xref: Glomerular:mesangium xref: http://www.snomedbrowser.com/Codes/Details/244574009 xref: MA:0002606 xref: MESH:A05.810.453.736.520.380 relationship: part_of UBERON:0004190 {source="GO"} ! renal glomerulus vasculature [Term] id: UBERON:0002333 name: pulmonary trunk namespace: uberon def: "An arterial trunk which is continuous with the heart and branches into the pulmonary arteries." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "main pulmonary artery" RELATED [http://en.wikipedia.org/wiki/Pulmonary_artery] synonym: "pulmonary artery (trunk)" EXACT [] synonym: "trunk of pulmonary arterial tree" EXACT [] xref: EHDAA2:0001576 xref: EHDAA:9831 xref: EMAPA:17015 xref: FMA:8612 xref: galen:PulmonaryTrunk xref: MA:0002033 xref: NCIT:C116918 xref: OpenCyc:Mx4rv-6d0ZwpEbGdrcN5Y29ycA xref: VHOG:0001134 is_a: UBERON:0001637 {source="MA"} ! artery relationship: continuous_with UBERON:0000948 ! heart relationship: part_of UBERON:0008886 ! pulmonary vascular system property_value: depicted:by Alveoli:diagram.png property_value: UBPROP:0000001 "An arterial trunk with origin from the right ventricle of the heart, and dividing into the right and left pulmonary arteries, which enter the corresponding lungs and branch with the bronchi. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001134", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+trunk"} property_value: UBPROP:0000003 "As in birds, the conus arteriosus split during embryonic development in mammals to produce the pulmonary trunk and single aortic trunk of the adult.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001134", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.481"} [Term] id: UBERON:0002345 name: descending thoracic aorta namespace: uberon def: "The part of the aorta that extends from the arch of the aorta to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest." [MP:0009868] subset: efo_slim subset: pheno_slim xref: EFO:0002527 xref: EMAPA:18605 xref: FMA:87217 xref: http://www.snomedbrowser.com/Codes/Details/181301002 xref: MA:0002572 relationship: contributes_to_morphology_of UBERON:0001514 ! descending aorta relationship: contributes_to_morphology_of UBERON:0001515 ! thoracic aorta relationship: part_of UBERON:0001514 ! descending aorta relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0002348 name: epicardium namespace: uberon def: "a region of the serous membrane that forms the innermost layer of the pericardium and the outer surface of the heart." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "heart epicardium" EXACT [] synonym: "pericardium visceral mesothelium" RELATED [EMAPA:16589] synonym: "visceral serous pericardium of heart" EXACT [FMA:9461] synonym: "visceral serous pericardium proper" EXACT [FMA:9461] xref: AAO:0010409 xref: EHDAA2:0002202 xref: FMA:9461 xref: galen:Epicardium xref: http://en.wikipedia.org/wiki/Epicardium xref: http://linkedlifedata.com/resource/umls/id/C0225968 xref: NCIT:C13164 xref: TAO:0005057 xref: UMLS:C0225968 {source="ncithesaurus:Epicardium"} xref: VHOG:0000119 xref: XAO:0000316 xref: ZFA:0005057 relationship: attaches_to UBERON:0002349 {source="FMA"} ! myocardium relationship: develops_from UBERON:0004160 ! proepicardium relationship: part_of UBERON:0000948 {source="multiple"} ! heart relationship: part_of UBERON:0002425 {source="FMA-inferred"} ! visceral serous pericardium property_value: IAO:0000116 "TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer." xsd:string property_value: UBPROP:0000001 "External layer of the heart.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005057", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The inner layer of the pericardium that is in contact with the surface of the heart.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010409", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000009 "The visceral pericardium apparently produces the pericardial fluid, which lubricates motion between the inner and outer layers of the pericardium. During ventricular contraction, the wave of depolarization moves from endocardial to epicardial surface. [Wikipedia:Epicardium]" xsd:string [Term] id: UBERON:0002349 name: myocardium namespace: uberon def: "the middle layer of the heart, comprised mainly of striated cardiac muscle fibers" [ISBN:0-683-40008-8, MP:0005329] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cardiac muscle" RELATED [ZFA:0001319] synonym: "heart muscle" RELATED [ZFA:0001319] synonym: "heart muscle" RELATED [FMA:9462] synonym: "heart myocardium" EXACT [] synonym: "muscle of heart" EXACT [FMA:9462] xref: AAO:0010410 xref: BSA:0000089 xref: BTO:0000901 xref: CALOHA:TS-0440 xref: EFO:0000819 xref: EHDAA2:0004150 xref: EMAPA:32688 xref: EV:0100022 xref: FMA:9462 xref: GAID:173 xref: galen:Myocardium xref: http://en.wikipedia.org/wiki/Myocardium xref: http://linkedlifedata.com/resource/umls/id/C0027061 xref: http://www.snomedbrowser.com/Codes/Details/362012001 xref: MA:0000164 xref: MAT:0000453 xref: MESH:D009206 xref: NCIT:C12371 xref: OpenCyc:Mx4ro36AFrCvEduAAAAOpmP6tw xref: RETIRED_EHDAA2:0001220 xref: TAO:0001319 xref: UMLS:C0027061 {source="ncithesaurus:Myocardium"} xref: VHOG:0000083 xref: XAO:0000065 xref: ZFA:0001319 is_a: UBERON:0005983 ! heart layer intersection_of: UBERON:0005983 ! heart layer intersection_of: composed_primarily_of UBERON:0001133 ! cardiac muscle tissue relationship: composed_primarily_of UBERON:0001133 ! cardiac muscle tissue relationship: has_part UBERON:0002350 ! conducting system of heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6e/Glanzstreifen.jpg property_value: IAO:0000116 "TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10). Note that GO also treats left/right ventricular cardiac muscle tissue synonymous with ventricular myocardium" xsd:string property_value: UBPROP:0000001 "Robust muscular tunic of the heart which forms the basic part of its walls. Its external surface is covered by the pericardium and its internal one by the endocardium. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000083", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000001 "The middle layer of the heart, consisting of cardiac muscle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010410", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000007 "myocardial" xsd:string [Term] id: UBERON:0002350 name: conducting system of heart namespace: uberon def: "The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat[GO]" [GO:0003161] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "cardiac conducting system" EXACT [VHOG:0001271] synonym: "cardiac conduction system" EXACT [] synonym: "cardiac impulse conducting system" EXACT [GO:0003161] synonym: "cardionector" EXACT [] synonym: "central conduction system" RELATED [] synonym: "complexus stimulans cordis" EXACT LATIN [FMA:9476, FMA:TA] synonym: "heart conduction system" EXACT [GO:0003161] synonym: "impulse conducting system" EXACT [MA:0000094] synonym: "systema conducente cordis" EXACT LATIN [FMA:9476, FMA:TA] xref: EFO:0003909 xref: EHDAA2:0004185 xref: EMAPA:35428 xref: EV:0100025 xref: FMA:9476 xref: http://www.snomedbrowser.com/Codes/Details/281489000 xref: MA:0000094 xref: MESH:D006329 xref: TAO:0005063 xref: VHOG:0001271 xref: ZFA:0005063 is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 {source="FMA"} ! conducting tissue of heart relationship: contributes_to_morphology_of UBERON:0000948 ! heart relationship: has_part CL:0002068 {source="FMA"} ! Purkinje myocyte relationship: has_part CL:0002073 {source="FMA"} ! transitional myocyte relationship: has_part CL:0002074 {source="FMA"} ! myocardial endocrine cell relationship: has_part CL:1000409 {source="FMA"} ! myocyte of sinoatrial node relationship: has_part CL:1000410 {source="FMA"} ! myocyte of atrioventricular node property_value: IAO:0000116 "EHDAA2 divides the system from the tissue" xsd:string property_value: UBPROP:0000003 "The fish heart displays clear polarity of contraction in a posterior-to-anterior direction. The contraction waves originate in the sinus venosus and terminate in the conus arteriosus. The nodal phenotype persists in the inflow region of the heart, varying from the venosinus to the sinoatrial junctional areas in different species . Similar to the mammalian situation, pacemaker tissue with a lower intrinsic rhythmicity is also found at the atrioventricular junction.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001271", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1152/physrev.00006.2003 Moorman AFM, Christoffels VM, Cardiac Chamber Formation: Development, Genes, and Evolution. Physiological Reviews (2003)"} [Term] id: UBERON:0002351 name: sinoatrial node namespace: uberon def: "The part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]." [GO:0003163, http://en.wikipedia.org/wiki/Sinoatrial_node] comment: WP:Heart states: "The SA node is found in all amniotes but not in more primitive vertebrates. In these animals, the muscles of the heart are relatively continuous and the sinus venosus coordinates the beat which passes in a wave through the remaining chambers. Indeed, since the sinus venosus is incorporated into the right atrium in amniotes, it is likely homologous with the SA node. In teleosts, with their vestigial sinus venosus, the main centre of coordination is, instead, in the atrium.". Note however that ZFA has SA node. subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cardiac pacemaker" EXACT [FMA:9477] synonym: "Koch's node" EXACT [FMA:9477] synonym: "node of Keith-Flack" EXACT [FMA:9477] synonym: "nodus sinuatrialis" EXACT LATIN [FMA:9477, FMA:TA] synonym: "nodus sinuatrialis" RELATED LATIN [http://en.wikipedia.org/wiki/Sinoatrial_node] synonym: "SA nodal muscle tissue" EXACT [FMA:9477] synonym: "SA node" EXACT [FMA:9477] synonym: "sinoatrial node" EXACT [FMA:9477] synonym: "sinu-atrial node" EXACT [FMA:9477] synonym: "sinuatrial nodal muscle tissue" EXACT [FMA:9477] synonym: "sinuatrial node" EXACT [FMA:9477] synonym: "sinus node" EXACT [FMA:9477] synonym: "sinus node of Keith and Flack" EXACT [FMA:9477] xref: BTO:0004358 xref: EHDAA2:0004184 xref: EMAPA:35772 xref: FMA:9477 xref: GAID:561 xref: http://linkedlifedata.com/resource/umls/id/C0037189 xref: http://www.snomedbrowser.com/Codes/Details/277687007 xref: MA:0000097 xref: MESH:D012849 xref: NCIT:C33555 xref: OpenCyc:Mx4rOhejDGMcEd2AAABQjYGu0g xref: Sinoatrial:node xref: TAO:0005069 xref: UMLS:C0037189 {source="ncithesaurus:Sinoatrial_Node"} xref: ZFA:0005069 is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart relationship: contributes_to_morphology_of UBERON:0002350 ! conducting system of heart relationship: part_of UBERON:0002350 {source="ZFA"} ! conducting system of heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Sinoatrial_node_low_mag.jpg property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/de/Sinoatrial_node_2_low_mag.jpg [Term] id: UBERON:0002352 name: atrioventricular node namespace: uberon def: "An area of conducting tissue between the atria and the ventricles of the heart that conducts the normal electrical impulse from the atria to the ventricles." [http://en.wikipedia.org/wiki/Atrioventricular_node, UBERON:cjm] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "A-V node" RELATED [EMAPA:35153] synonym: "Aschoff-Tawara node" EXACT [FMA:9478] synonym: "atrio-ventricular node" RELATED [EMAPA:35153] synonym: "atrioventricular nodal muscle tissue" EXACT [FMA:9478] synonym: "atriovetricular node" RELATED [TAO:0005070] synonym: "AV nodal muscle tissue" EXACT [FMA:9478] synonym: "AV node" EXACT [FMA:9478, MA:0000095] synonym: "downstream pacemaker" RELATED [ZFA:0005070] synonym: "node of Tawara" EXACT [FMA:9478] synonym: "nodus atrioventricularis" EXACT LATIN [FMA:TA] synonym: "nodus atrioventricularis" RELATED LATIN [http://en.wikipedia.org/wiki/Atrioventricular_node] xref: Atrioventricular:node xref: BTO:0005689 xref: EFO:0000276 xref: EHDAA2:0004183 xref: EMAPA:35153 xref: FMA:9478 xref: GAID:558 xref: http://linkedlifedata.com/resource/umls/id/C0004247 xref: http://www.snomedbrowser.com/Codes/Details/277688002 xref: MA:0000095 xref: MAT:0000498 xref: MESH:D001283 xref: NCIT:C32161 xref: OpenCyc:Mx4rMfD91mMcEd2AAABQjYGu0g xref: TAO:0005070 xref: UMLS:C0004247 {source="ncithesaurus:Atrioventricular_Node"} xref: VHOG:0001474 xref: ZFA:0005070 is_a: UBERON:0004491 ! cardiac muscle tissue of interatrial septum is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart relationship: connected_to UBERON:0002085 ! interatrial septum relationship: connected_to UBERON:0005979 ! crista terminalis relationship: contributes_to_morphology_of UBERON:0002350 ! conducting system of heart relationship: part_of UBERON:0002350 ! conducting system of heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/92/Gray501.png property_value: UBPROP:0000003 "Three major adaptations, or 'novel cardiac components', that were not present in the ancestor chordate heart tube can be distinguished in the lower vertebrate heart: the atrium, ventricle, and possibly the muscular sinus venosus. Furthermore, within the ventricular component a compact outer myocardial component and an interiorly localized extensive trabecular component can be distinguished. The specific activation of the ventricle adds to its complexity as follows. The depolarizing impulse travels rapidly from the atrioventricular node toward the apex and then toward the conal region, achieving activation from apex to base.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001474", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1152/physrev.00006.2003 Moorman AFM, Christoffels VM, Cardiac Chamber Formation: Development, Genes, and Evolution. Physiological Reviews (2003)"} [Term] id: UBERON:0002353 name: atrioventricular bundle namespace: uberon def: "A part of the His-Purkinje system that transmits signals from the AV node to the cardiac Purkinje fibers[GO]" [GO:0003166, GOC:mtg_heart] subset: pheno_slim subset: uberon_slim synonym: "A-V bundle" RELATED [EMAPA:35152] synonym: "atrio-ventricular bundle" RELATED [EMAPA:35152] synonym: "atrioventricular bundle muscle tissue" EXACT [FMA:9484] synonym: "atrioventricular fasciculus" EXACT [FMA:9484] synonym: "AV bundle" EXACT [] synonym: "bundle of His" EXACT [FMA:9484, GO:0003166] synonym: "fasciculus atrioventricularis" EXACT LATIN [http://en.wikipedia.org/wiki/Bundle_of_His] synonym: "His bundle" EXACT [] xref: EMAPA:35152 xref: FMA:9484 xref: GAID:559 xref: galen:BundleOfHis xref: http://en.wikipedia.org/wiki/Bundle_of_His xref: http://linkedlifedata.com/resource/umls/id/C0006382 xref: http://www.snomedbrowser.com/Codes/Details/362022007 xref: MA:0002576 xref: MESH:D002036 xref: NCIT:C32160 xref: OpenCyc:Mx4rUv1WcGPJEd2AAABQjYGu0g xref: UMLS:C0006382 {source="ncithesaurus:Atrioventricular_Bundle"} is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle relationship: contributes_to_morphology_of UBERON:0002350 ! conducting system of heart relationship: has_part CL:1000410 {source="FMA"} ! myocyte of atrioventricular node relationship: part_of UBERON:0004146 {source="GO"} ! His-Purkinje system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b6/ECG_Principle_fast.gif [Term] id: UBERON:0002354 name: cardiac Purkinje fiber namespace: uberon alt_id: UBERON:0004147 def: "The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle" [GO:0003165] subset: pheno_slim subset: uberon_slim synonym: "cardiac Purkinje fiber" EXACT [BTO:0001735, GO:0003165] synonym: "heart Purkinje fiber" RELATED [BTO:0001735] synonym: "myofibra conducens cardiacus" EXACT LATIN [] synonym: "Purkinje fiber" EXACT [FMA:9492, MA:0000096] synonym: "subendocardial branch" EXACT [http://en.wikipedia.org/wiki/Purkinje_fiber] xref: BTO:0001735 xref: EMAPA:35718 xref: FMA:9492 xref: GAID:560 xref: http://linkedlifedata.com/resource/umls/id/C0034144 xref: MA:0000096 xref: MESH:D011690 xref: NCIT:C33430 xref: Purkinje:fiber xref: UMLS:C0034144 {source="ncithesaurus:Purkinje_Fiber"} is_a: UBERON:0010131 {source="FMA"} ! conducting tissue of heart is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle relationship: contributes_to_morphology_of UBERON:0002350 ! conducting system of heart relationship: has_part CL:0002068 {source="FMA"} ! Purkinje myocyte relationship: part_of UBERON:0004146 {source="GO"} ! His-Purkinje system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png [Term] id: UBERON:0002357 name: serous pericardium namespace: uberon def: "Serous membrane which is divided into parietal and visceral serous pericardium." [http://en.wikipedia.org/wiki/Serous_pericardium, http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "pericardium serosum" RELATED LATIN [http://en.wikipedia.org/wiki/Serous_pericardium] synonym: "serous portion of pericardium" EXACT [FMA:9582] xref: EMAPA:19030 xref: FMA:9582 xref: http://www.snomedbrowser.com/Codes/Details/243954002 xref: MA:0002739 xref: Serous:pericardium relationship: attaches_to UBERON:0002359 {source="FMA"} ! fibrous pericardium relationship: has_part UBERON:0002408 ! parietal serous pericardium relationship: has_part UBERON:0002425 ! visceral serous pericardium relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac [Term] id: UBERON:0002359 name: fibrous pericardium namespace: uberon def: "Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA]" [FMA:9586] subset: organ_slim subset: uberon_slim synonym: "fibrous portion of pericardium" EXACT [] synonym: "pericardium fibrosum" RELATED LATIN [http://en.wikipedia.org/wiki/Fibrous_pericardium] xref: EMAPA:19029 xref: Fibrous:pericardium xref: FMA:9586 xref: http://www.snomedbrowser.com/Codes/Details/243953008 xref: MA:0002738 relationship: continuous_with UBERON:0002408 ! parietal serous pericardium relationship: part_of UBERON:0002407 {source="FMA"} ! pericardium property_value: UBPROP:0000010 "most superficial part of pericardium; continuous with the outer adventitial layer of the neighboring great blood vessels. [Wikipedia:Pericardium]" xsd:string [Term] id: UBERON:0002391 name: lymph namespace: uberon def: "Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system through lymph capillaries[WP]." [http://en.wikipedia.org/wiki/Lymph] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "lympha" RELATED LATIN [http://en.wikipedia.org/wiki/Lymph] xref: BTO:0000855 xref: CALOHA:TS-0580 xref: EFO:0000871 xref: ENVO:02000041 xref: EV:0100049 xref: FMA:9671 xref: GAID:1186 xref: galen:Lymph xref: http://en.wikipedia.org/wiki/Lymph xref: http://linkedlifedata.com/resource/umls/id/C0024202 xref: MA:0002520 xref: MAT:0000055 xref: MESH:A12.207.630 xref: MIAA:0000055 xref: NCIT:C13252 xref: OpenCyc:Mx4rvpDOU5wpEbGdrcN5Y29ycA xref: UMLS:C0024202 {source="ncithesaurus:Lymph"} xref: VHOG:0001590 xref: ZFA:0005658 relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Illu_lymph_capillary.png [Term] id: UBERON:0002406 name: pericardial sac namespace: uberon def: "a double-walled sac containing the heart and the roots of the great vessels." [http://en.wikipedia.org/wiki/Pericardium, https://github.com/obophenotype/uberon/issues/86] subset: uberon_slim subset: vertebrate_core synonym: "pericardium" RELATED [] xref: FMA:9868 xref: http://www.snomedbrowser.com/Codes/Details/361326002 xref: RETIRED_EHDAA2:0001443 xref: TAO:0000054 relationship: has_part UBERON:0001074 ! pericardial cavity relationship: has_part UBERON:0002357 ! serous pericardium relationship: part_of UBERON:0002407 ! pericardium relationship: surrounded_by UBERON:0002359 {source="FMA"} ! fibrous pericardium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png [Term] id: UBERON:0002407 name: pericardium namespace: uberon def: "The combination of pericardial sac (a double-walled sac containing the heart and the roots of the great vessels) plus fibrous pericardium." [http://en.wikipedia.org/wiki/Pericardium, http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core xref: AAO:0010817 xref: BSA:0000090 xref: BTO:0000717 xref: CALOHA:TS-0761 xref: EFO:0000820 xref: EHDAA:5376 xref: EMAPA:16133 xref: EV:0100023 xref: FMA:9869 xref: GAID:569 xref: galen:Pericardium xref: http://en.wikipedia.org/wiki/Pericardium xref: http://linkedlifedata.com/resource/umls/id/C0031050 xref: http://www.snomedbrowser.com/Codes/Details/181295003 xref: MA:0000099 xref: MAT:0000454 xref: MESH:D010496 xref: NCIT:C13005 xref: OpenCyc:Mx4rvoCLgJwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0001443 xref: TAO:0000054 xref: UMLS:C0031050 {source="ncithesaurus:Pericardium"} xref: VHOG:0001280 xref: XAO:0004182 xref: ZFA:0000054 relationship: has_part UBERON:0002359 ! fibrous pericardium relationship: has_part UBERON:0002406 ! pericardial sac relationship: part_of UBERON:0015410 {source="MA"} ! heart plus pericardium relationship: surrounds UBERON:0002349 ! myocardium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png property_value: UBPROP:0000001 "Peritoneum that surrounds the heart.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010817", ontology="AAO", source="AAO:JMG"} property_value: UBPROP:0000007 "pericardial" xsd:string property_value: UBPROP:0000012 "In GO the concept of pericardium is developmental implicitly epithelial, but here it represents a multi-tissue structure encompassing the sac (epithelium plus connective) and cavity" xsd:string {external_ontology="FMA"} property_value: UBPROP:0000012 "this class denotes a combination of fibrous PC + PC sac (itself a combination of cavity, epithelium and connective tissue). Many sources use the term 'pericardium' to denote either just the serous membrane (ZFA) or the epithelium (GO)" xsd:string {external_ontology="ZFA"} property_value: UBPROP:0000012 "we follow FMA in dividing pericardium into pericardial sac and fibrous pericardium" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002408 name: parietal serous pericardium namespace: uberon def: "Parietal serous membrane which is part of the pericardium and forms the outer layer of the pericardial sac." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "lamina parietalis (pericardii serosum)" EXACT [] synonym: "lamina parietalis pericardii" EXACT LATIN [FMA:9870, FMA:TA] synonym: "parietal layer of serous pericardium" EXACT [] synonym: "parietal pericardium" EXACT [VHOG:0000537] synonym: "pericardial sac" RELATED INCONSISTENT [https://doi.org/10.5962/bhl.title.1013] xref: EHDAA:3422 xref: EHDAA:5378 xref: EMAPA:19031 xref: FMA:9870 xref: http://linkedlifedata.com/resource/umls/id/C0225969 xref: http://www.snomedbrowser.com/Codes/Details/243956000 xref: MA:0000483 xref: NCIT:C94500 xref: Parietal:pericardium xref: UMLS:C0225969 {source="ncithesaurus:Parietal_Pericardium"} xref: VHOG:0000537 relationship: part_of UBERON:0002357 ! serous pericardium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png [Term] id: UBERON:0002425 name: visceral serous pericardium namespace: uberon def: "Visceral serous membrane which is continuous with the parietal serous pericardium and is attached to the myocardium[FMA]." [http://en.wikipedia.org/wiki/Visceral_pericardium] subset: pheno_slim subset: uberon_slim synonym: "epicardium" RELATED [MA:0000484] synonym: "lamina visceralis pericardii serosi" EXACT LATIN [http://en.wikipedia.org/wiki/Epicardium] synonym: "pericardium visceral mesothelium" RELATED [EMAPA:16589] synonym: "serous visceral pericardium" EXACT [] synonym: "visceral lamina of serous pericardium" EXACT [] synonym: "visceral layer of serous pericardium" EXACT [] synonym: "visceral pericardium" EXACT [VHOG:0000538] xref: EMAPA:16589 xref: EMAPA:19032 xref: FMA:84882 xref: http://www.snomedbrowser.com/Codes/Details/243955001 xref: MA:0000484 xref: VHOG:0000538 xref: Visceral:pericardium relationship: attaches_to UBERON:0002349 {source="FMA"} ! myocardium relationship: contributes_to_morphology_of UBERON:0002407 ! pericardium relationship: has_part UBERON:0002348 {source="cjm"} ! epicardium relationship: part_of UBERON:0002357 ! serous pericardium [Term] id: UBERON:0002443 name: choroidal blood vessel namespace: uberon def: "A blood vessel that is part of a choroid [Automatically generated definition]." [OBOL:automatic] comment: cannot find singular in FMA, using Set class subset: pheno_slim synonym: "blood vessel of choroid" EXACT [OBOL:automatic] synonym: "blood vessel of choroid coat" EXACT [OBOL:automatic] synonym: "blood vessel of choroidea" EXACT [OBOL:automatic] synonym: "blood vessel of posterior uvea" EXACT [OBOL:automatic] synonym: "choroid blood vessel" EXACT [OBOL:automatic] synonym: "choroid blood vessels" EXACT [] synonym: "choroid blood vessels set" EXACT [] synonym: "choroid coat blood vessel" EXACT [OBOL:automatic] synonym: "choroidea blood vessel" EXACT [OBOL:automatic] synonym: "posterior uvea blood vessel" EXACT [OBOL:automatic] synonym: "set of choroid blood vessels" RELATED [FMA:76550] synonym: "vasa sanguinea choroideae" EXACT LATIN [FMA:76550, FMA:TA] xref: EMAPA:17828 xref: FMA:76550 xref: MA:0001237 is_a: UBERON:0003496 ! head blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001776 ! optic choroid relationship: part_of UBERON:0001776 ! optic choroid [Term] id: UBERON:0002454 name: dorsal metacarpal artery namespace: uberon def: "Aanastomosis of dorsal carpal branch of the radial artery and the dorsal carpal branch of the ulnar artery near the back of the wrist. It is made up of the dorsal carpal branches of both the ulnar and radial arteries. It also anastomoses with the anterior interosseous artery and the posterior interosseous artery. The arch gives off three dorsal metacarpal arteries." [http://en.wikipedia.org/wiki/Dorsal_metacarpal_artery] subset: uberon_slim synonym: "arteriae metacarpales dorsales" EXACT LATIN [FMA:70800, FMA:TA] synonym: "dorsal metacarpal arteries" EXACT [] synonym: "dorsal metacarpal arteries set" EXACT [] synonym: "set of dorsal metacarpal arteries" RELATED [FMA:70800] xref: EMAPA:37079 {source="MA:th"} xref: FMA:70800 xref: http://en.wikipedia.org/wiki/Dorsal_metacarpal_artery xref: http://linkedlifedata.com/resource/umls/id/C0447094 xref: http://www.snomedbrowser.com/Codes/Details/244320002 xref: MA:0001944 xref: NCIT:C52980 xref: UMLS:C0447094 {source="ncithesaurus:Dorsal_Metacarpal_Artery"} is_a: UBERON:0001637 ! artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/64/Gray529.png property_value: IAO:0000116 "check FMA, singular. specific subtypes e.g. FMA:22761 first dorsal metacarpal artery" xsd:string [Term] id: UBERON:0002455 name: common plantar digital arteries namespace: uberon def: "." [http://en.wikipedia.org/wiki/Common_plantar_digital_arteries] synonym: "arteriae digitales plantares communes" EXACT LATIN [FMA:70821, FMA:TA] synonym: "arteriae digitales plantares communes" RELATED LATIN [http://en.wikipedia.org/wiki/Common_plantar_digital_arteries] synonym: "common plantar digital arteries" EXACT [] synonym: "common plantar digital arteries set" EXACT [FMA:70821] synonym: "set of common plantar digital arteries" RELATED [FMA:70821] xref: EMAPA:37208 {source="MA:th"} xref: FMA:70821 xref: http://en.wikipedia.org/wiki/Common_plantar_digital_arteries xref: MA:0001966 is_a: UBERON:0006138 ! plantar digital artery relationship: has_part UBERON:0001410 ! common palmar digital artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png [Term] id: UBERON:0002456 name: internal thoracic artery namespace: uberon def: "An artery that supplies the anterior chest wall and the breasts. It is a paired artery, with one running along each side of the sternum, to continue after its bifurcation as the superior epigastric and musculophrenic arteries. [WP,unvetted]." [http://en.wikipedia.org/wiki/Internal_thoracic_artery] subset: uberon_slim synonym: "arteria mammaria interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_thoracic_artery] synonym: "arteria thoracica interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_thoracic_artery] synonym: "internal mammary artery" EXACT PENDING_REVIEW [MA:0001982] synonym: "internal thoracic mammary artery" EXACT [] synonym: "mammary artery" RELATED [EMAPA:18617] xref: EHDAA2:0000880 xref: EHDAA:8585 xref: EMAPA:18617 xref: FMA:3960 xref: http://en.wikipedia.org/wiki/Internal_thoracic_artery xref: http://linkedlifedata.com/resource/umls/id/C0226276 xref: http://www.snomedbrowser.com/Codes/Details/244239009 xref: MA:0001982 xref: MA:0001984 xref: NCIT:C52941 xref: OpenCyc:Mx4rMe0MIao8EduQrwACs5b6Bw xref: UMLS:C0226276 {source="ncithesaurus:Internal_Mammary_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001533 ! subclavian artery relationship: part_of UBERON:0001533 ! subclavian artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray522.png property_value: UBPROP:0000012 "MA has both mammary and thoracic" xsd:string {external_ontology="MA"} [Term] id: UBERON:0002457 name: intersomitic artery namespace: uberon alt_id: UBERON:0006001 def: "The small branching sprouts of the dorsal aorta that grow across the medial surface of the somite, turn right angles to grow over that surface and then fuse with other sprouts and form the vertebral arteries adjacent to the neural tube; the intersomitic arteries supply the body wall and persist in the adult as the posterior intercostal, subcostal and the lumbar arteries" [MP:0010662] subset: pheno_slim subset: vertebrate_core synonym: "intersegmental arteries" RELATED PLURAL [ZFA:0001061] synonym: "intersegmental artery" EXACT [ZFA:0001061] xref: EHDAA2:0000882 xref: EHDAA:4340 xref: EMAPA:17616 xref: http://www.snomedbrowser.com/Codes/Details/360401001 xref: MA:0001985 xref: TAO:0001061 xref: VHOG:0000225 xref: XAO:0004165 xref: ZFA:0001061 is_a: UBERON:0001637 ! artery is_a: UBERON:0014907 ! intersomitic vessel property_value: UBPROP:0000001 "Arteries that connect the dorsal aorta and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arteriproperty_value external_definitionmarkers. They form from the primary sprouts from the dorsal aorta[ZFA:0001061]." xsd:string {source="ZFA:0001061"} property_value: UBPROP:0000003 "Few changes of evolutionary significance occur in the branching pattern of the dorsal aorta. All vertebrates have (...) paired intersegmental arteries to the trunk, tail, and paired appendages.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000225", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.612"} [Term] id: UBERON:0002458 name: spinal artery namespace: uberon def: "Arteries that supply the spinal cord." [http://en.wikipedia.org/wiki/Spinal_artery, https://orcid.org/0000-0002-6601-2165] subset: uberon_slim subset: vertebrate_core synonym: "spinal arteries" EXACT PLURAL [ZFA:0000682] xref: EHDAA2:0001890 xref: EHDAA:4355 xref: EMAPA:18241 xref: http://linkedlifedata.com/resource/umls/id/C0447043 xref: http://www.snomedbrowser.com/Codes/Details/244228006 xref: MA:0002043 xref: NCIT:C33587 xref: Spinal:artery xref: TAO:0000682 xref: UMLS:C0447043 {source="ncithesaurus:Spinal_Artery"} xref: ZFA:0000682 is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0002459 name: inferior palpebral vein namespace: uberon def: "A blood vessel that drains from from an lower eyelid." [http://orcid.org/0000-0002-6601-2165] synonym: "inferior palpebral veins" EXACT [] synonym: "inferior palpebral veins set" EXACT [] synonym: "lower palpebral vein" RELATED [MA:0002147] synonym: "vein of inferior eyelid" EXACT [] synonym: "venae palpebrales inferiores" RELATED LATIN [FMA:70847, FMA:TA] xref: EMAPA:37156 {source="MA:th"} xref: FMA:50913 xref: http://linkedlifedata.com/resource/umls/id/C1760539 xref: http://www.snomedbrowser.com/Codes/Details/422559003 xref: MA:0002147 xref: NCIT:C53049 xref: UMLS:C1760539 {source="ncithesaurus:Inferior_Palpebral_Vein"} is_a: UBERON:0014769 ! palpebral vein property_value: UBPROP:0000202 FMA:70847 [Term] id: UBERON:0002460 name: vesical vein namespace: uberon def: "A tributary of the iliac vein that drains the urinary bladder." [http://en.wikipedia.org/wiki/Vesical_veins, UBERON:cjm] subset: uberon_slim synonym: "venae vesicales" EXACT LATIN [FMA:70911, FMA:TA] synonym: "vesical veins" EXACT PLURAL [] synonym: "vesical veins set" EXACT [] xref: EMAPA:37205 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/12683000 xref: MA:0002263 xref: Vesical:veins is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001317 ! internal iliac vein relationship: tributary_of UBERON:0001317 ! internal iliac vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png property_value: UBPROP:0000202 FMA:70911 [Term] id: UBERON:0002493 name: uterine artery namespace: uberon def: "the branch of the internal iliac artery that supplies the uterus and the upper part of the vagina" [MGI:monikat, MP:0003995] subset: pheno_slim subset: uberon_slim synonym: "arteria uterina" RELATED LATIN [http://en.wikipedia.org/wiki/Uterine_artery] xref: FMA:18829 xref: http://www.snomedbrowser.com/Codes/Details/244300003 xref: MA:0002799 xref: Uterine:artery is_a: UBERON:0001190 ! ovarian artery is_a: UBERON:0010192 ! genital artery relationship: branching_part_of UBERON:0001309 ! internal iliac artery relationship: part_of UBERON:0001309 ! internal iliac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png [Term] id: UBERON:0002494 name: papillary muscle of heart namespace: uberon def: "one of the group of myocardial bundles which terminate in the chordae tendineae that attach to the cusps of the atrioventricular valves; each ventricle has an anterior and a posterior papillary muscle; the right ventricle sometimes has a septal papillary muscle" [MGI:anna, MP:0004058] subset: pheno_slim subset: uberon_slim synonym: "musculus papillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Papillary_muscle] synonym: "papillary muscle" EXACT [MA:0002800] synonym: "papillary muscle of ventricle" EXACT [MA:0002800] synonym: "ventricular papillary muscle" EXACT [MA:0002800] synonym: "ventricule papillary muscle" EXACT [] xref: EHDAA:8655 xref: FMA:12154 xref: GAID:175 xref: galen:PapillaryMuscle xref: http://linkedlifedata.com/resource/umls/id/C0030352 xref: http://www.snomedbrowser.com/Codes/Details/279329009 xref: MA:0002800 xref: MESH:D010210 xref: NCIT:C33259 xref: OpenCyc:Mx4rDid0jLYYEduAAAACs2IKfQ xref: Papillary:muscle xref: UMLS:C0030352 {source="ncithesaurus:Papillary_Muscle"} xref: VHOG:0001392 relationship: part_of UBERON:0002082 ! cardiac ventricle property_value: depicted:by Papillary:muscles.png property_value: UBPROP:0000003 "On the internal or parietal surface of the left ventricle in man and in mammals are two papillary muscles, which are almost identical and well developed.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001392", ontology="VHOG", source="http://bgee.unil.ch/", source="https://doi.org/10.1111/j.1368-5031.2005.00345.x"} property_value: UBPROP:0000009 "These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities.[Wikipedia:Papillary_muscle]" xsd:string [Term] id: UBERON:0002505 name: spiral modiolar artery namespace: uberon def: "The artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents." [MP:0004629] subset: pheno_slim xref: FMA:52312 xref: http://www.snomedbrowser.com/Codes/Details/149380004 xref: MA:0002824 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: branching_part_of UBERON:0018231 ! labyrinthine artery relationship: part_of UBERON:0018231 ! labyrinthine artery [Term] id: UBERON:0002511 name: trabecula carnea namespace: uberon def: "the supporting bundles of muscular fibers lining the walls of the ventricles of the heart" [MGI:monikat, MP:0004067] subset: pheno_slim synonym: "cardiac trabecula" RELATED [GO:0060347] synonym: "columnae carneae" RELATED LATIN [http://en.wikipedia.org/wiki/Trabeculae_carneae] synonym: "heart trabecula" RELATED [GO:0060347] synonym: "trabecula of heart" RELATED [] synonym: "trabeculae carneae" RELATED PLURAL [] synonym: "trabeculae carneae cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Trabeculae_carneae] synonym: "ventricle trabecula carnea" EXACT [MA:0002831] synonym: "ventricular trabecula" RELATED [MA:0002831] xref: EMAPA:18626 xref: FMA:7269 xref: http://www.snomedbrowser.com/Codes/Details/118755002 xref: MA:0002831 xref: Trabeculae:carneae relationship: composed_primarily_of UBERON:0001133 ! cardiac muscle tissue relationship: part_of UBERON:0002082 {source="WP"} ! cardiac ventricle property_value: UBPROP:0000009 "The purpose of the trabeculae carneae is most likely to prevent suction that would occur with a flat surfaced membrane and thus impair the heart's ability to pump efficiently. The trabeculae carneae also serve a similar function to papillary muscles in that their contraction pulls on the chordae tendineae, preventing inversion of the mitral (bicuspid) and tricuspid valves, that is, their bulging towards the atrial chambers, which would lead to subsequent leakage of the blood into the atria. So by the action of papillary muscles on the atrioventricular valves, backflow of the blood from the ventricles into the atria is prevented" xsd:string {source="WP"} property_value: UBPROP:0000012 "Note that WP states they are ventricular, but MP has classes for atrial ventricular carnea." xsd:string {external_ontology="MP"} [Term] id: UBERON:0002522 name: tunica media namespace: uberon def: "The middle layer of an artery or vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tunica_media] comment: May be composed of smooth muscle and elastic tissue subset: uberon_slim synonym: "tunica media vasorum" RELATED [BTO:0002011] synonym: "tunica media vasorum" RELATED LATIN [http://en.wikipedia.org/wiki/Tunica_media] xref: BTO:0002011 xref: EMAPA:36298 xref: FMA:55590 xref: GAID:170 xref: http://linkedlifedata.com/resource/umls/id/C0162867 xref: http://www.snomedbrowser.com/Codes/Details/61695000 xref: MA:0002855 xref: MESH:D017540 xref: NCIT:C33821 xref: Tunica:media xref: UMLS:C0162867 {source="ncithesaurus:Tunica_Media"} is_a: UBERON:0004797 {source="MA"} ! blood vessel layer relationship: has_part UBERON:0004237 {source="cjm"} ! blood vessel smooth muscle relationship: surrounded_by UBERON:0005734 ! tunica adventitia of blood vessel property_value: depicted:by Illu:artery.jpg [Term] id: UBERON:0003084 name: heart primordium namespace: uberon def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator] subset: uberon_slim synonym: "cardiac field" RELATED [ZFA:0000028] synonym: "fused heart primordium" RELATED [] xref: AAO:0011044 xref: BTO:0001887 xref: http://linkedlifedata.com/resource/umls/id/C1514450 xref: NCIT:C34276 xref: TAO:0000028 xref: UMLS:C1514450 {source="ncithesaurus:Primordium_of_the_Heart"} xref: XAO:0000336 xref: ZFA:0000028 relationship: part_of UBERON:0004535 {source="ZFA"} ! cardiovascular system property_value: IAO:0000116 "should probably be merged with heart rudiment." xsd:string property_value: UBPROP:0000001 "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000028", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The fused aspects of ventral mesoderm, which have migrated from either side of the prechordal plate, and fused ventrally, just behind the cement gland. They will give rise to the endocardium at NF stage 27&28.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011044", ontology="AAO", source="XAO:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from lateral mesoderm (TAO:0001065)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000028", ontology="TAO"} [Term] id: UBERON:0003085 name: ventral aorta namespace: uberon def: "The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once[GO]." [GO:0035908] comment: Taxon notes (via vHOG): "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.620. // in Reptiles, splits to form bases of 3 arteries: left aortic arch, right aortic arch and pulmonary trunk. In birds, the right systemic arch becomes predominant, the left never fully develops [Kardong] subset: uberon_slim xref: AAO:0010412 xref: BTO:0004674 xref: TAO:0000604 xref: VHOG:0000121 xref: XAO:0000338 xref: ZFA:0000604 is_a: UBERON:0000947 ! aorta relationship: channels_from UBERON:0000948 ! heart property_value: UBPROP:0000001 "Outflow artery from the heart to the aortic arches. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000604", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The artery in vertebrate embryos that carries blood from the ventricle of the heart to the aortic arches. In adult fish it branches into afferent branchial arteries supplying the gills. In adult tetrapods it is represented by the ascending part of the aorta." xsd:string {source="BTO:0004674"} property_value: UBPROP:0000003 "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000121", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} [Term] id: UBERON:0003086 name: caudal artery namespace: uberon def: "Extension of the dorsal aorta in the tail." [http://en.wikipedia.org/wiki/Caudal_artery, ZFIN:curator] subset: efo_slim subset: uberon_slim synonym: "CA" RELATED [] xref: AAO:0011023 xref: Caudal:artery xref: EFO:0003472 xref: TAO:0000011 xref: VHOG:0000123 xref: XAO:0000364 xref: ZFA:0000011 is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0003524 ! tail blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0005805 ! dorsal aorta relationship: part_of UBERON:0005805 ! dorsal aorta relationship: part_of UBERON:2001073 ! axial vasculature property_value: UBPROP:0000001 "Extension of the dorsal aorta in the tail. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000011", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The posterior extension of the dorsal aorta to the tail region, which degenerates at metamorphosis.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011023", ontology="AAO", source="ISBN:0-226-55763-4"} [Term] id: UBERON:0003087 name: anterior cardinal vein namespace: uberon alt_id: UBERON:0009770 def: "One of the the two paired cardinal veins draining the cephalic part of the body." [http://en.wikipedia.org/wiki/Anterior_cardinal_vein, ISBN:0073040584, MP:0004784] comment: contribute to the formation of the internal jugular veins and together with the common cardinal vein form the superior vena cava. In an anastomosis by anterior cardinal veins, the left brachiocephalic vein is produced[WP] subset: pheno_slim subset: vertebrate_core synonym: "ACV" RELATED [] synonym: "precardinal vein" RELATED [FMA:70309, http://en.wikipedia.org/wiki/Anterior_cardinal_vein] synonym: "rostral cardinal vein" EXACT [ZFA:0000423] synonym: "rostral cardinal veins" RELATED [] synonym: "superior cardinal vein" RELATED [http://www.embryology.ch/anglais/pcardio/venen01.html] xref: AAO:0011011 xref: BTO:0004387 xref: EHDAA:1312 xref: EMAPA:16241 xref: FMA:70309 xref: http://en.wikipedia.org/wiki/Anterior_cardinal_vein xref: http://linkedlifedata.com/resource/umls/id/C0231086 xref: http://www.snomedbrowser.com/Codes/Details/308780006 xref: NCIT:C34108 xref: TAO:0000423 xref: UMLS:C0231086 {source="ncithesaurus:Anterior_Cardinal_Vein"} xref: VHOG:0000113 xref: XAO:0000383 xref: ZFA:0000423 is_a: UBERON:0004344 ! cardinal vein relationship: channels_from UBERON:0002200 ! vasculature of head property_value: UBPROP:0000001 "The anterior cardinal vein returns blood from the dorsal head and drains into the duct of Cuvier via the pronephric sinus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011011", ontology="AAO", source="http://www.ncbi.nlm.nih.gov/pubmed/12606281"} property_value: UBPROP:0000003 "In primitive vertebrates, the basic early embryonic pattern is retained, and blood from anterior and posterior systemic tissues is returned in anterior and posterior cardinal veins, both pairs of veins uniting in common cardinal veins near the heart. In derived vertebrates, the cardinals appear but usually persist only in the embryo, being functionally replaced by alternative adult vessels, the precava and postcava (anterior and posterior venae cavae).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000113", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.462"} [Term] id: UBERON:0003088 name: caudal vein namespace: uberon def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995.[ZFIN]" [ZFIN:curator] subset: efo_slim subset: uberon_slim synonym: "CV" RELATED [] xref: AAO:0011025 xref: EFO:0003616 xref: NCIT:C92598 xref: TAO:0000180 xref: VHOG:0000126 xref: XAO:0000390 xref: ZFA:0000180 is_a: UBERON:0003481 ! tail vein property_value: UBPROP:0000001 "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000180", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterior cardinal vein in the posterior trunk[XB:curator]." xsd:string {source="XB:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from caudal vein plexus (TAO:0001286)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000180", ontology="TAO"} property_value: UBPROP:0000002 "relationship loss: part_of axial vasculature (TAO:0001073)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000180", ontology="TAO"} [Term] id: UBERON:0003105 name: dorsal lateral plate region namespace: uberon def: "Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo." [http://www.ncbi.nlm.nih.gov/pubmed/9618755, ZFIN:curator] subset: efo_slim subset: uberon_slim synonym: "AGM region" RELATED [XAO:0003051] synonym: "aorta-gonads-mesonephros region" RELATED [XAO:0003051] synonym: "DLP" EXACT [XAO:0003051] xref: AAO:0011008 xref: XAO:0003051 relationship: part_of UBERON:0000947 ! aorta property_value: UBPROP:0000001 "Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011008", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000001 "Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005028", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0003118 name: pharyngeal arch artery 1 namespace: uberon alt_id: UBERON:0004371 def: "The vessels formed within the first pair of branchial arches in embryogenesis" [MP:0010355] subset: pheno_slim subset: vertebrate_core synonym: "1st aortic arch artery" RELATED [EMAPA:16685] synonym: "1st arch artery" EXACT [EMAPA:16685] synonym: "1st branchial arch artery" RELATED [EMAPA:16685] synonym: "1st pharyngeal arch artery" RELATED [EMAPA:16685] synonym: "AA1" EXACT [ZFA:0005005] synonym: "aortic arch 1" EXACT [ZFA:0005005] synonym: "first aortic arch" EXACT [XAO:0000342] synonym: "first arch artery" RELATED [EMAPA:16685] synonym: "first branchial arch artery" EXACT [] synonym: "mandibular aortic arch" EXACT [ZFA:0005005] xref: AAO:0010415 xref: EHDAA2:0000007 xref: EMAPA:16202 xref: EMAPA:16685 xref: http://www.snomedbrowser.com/Codes/Details/308774003 xref: TAO:0005005 xref: VHOG:0000149 xref: XAO:0000342 xref: ZFA:0005005 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000008 "Disappears early in development in tetrapods" xsd:string property_value: UBPROP:0000012 "ZFA states that The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aortas" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0003119 name: pharyngeal arch artery 2 namespace: uberon alt_id: UBERON:0004372 def: "The vessels formed within the second pair of branchial arches in embryogenesis" [MP:0010356] subset: pheno_slim subset: vertebrate_core synonym: "2nd aortic arch artery" RELATED [EMAPA:16686] synonym: "2nd arch artery" EXACT [EHDAA2:0000051] synonym: "2nd branchial arch artery" RELATED [EMAPA:16686] synonym: "2nd pharyngeal arch artery" RELATED [EMAPA:16686] synonym: "AA2" EXACT [ZFA:0005006] synonym: "aortic arch 2" EXACT [ZFA:0005006] synonym: "hyoid aortic arch" EXACT [ZFA:0005006] synonym: "second aortic arch" EXACT [XAO:0000343] synonym: "second branchial arch artery" EXACT [] xref: AAO:0010418 xref: Arches_1_and_2 xref: EHDAA2:0000051 xref: EMAPA:16203 xref: EMAPA:16686 xref: http://www.snomedbrowser.com/Codes/Details/308775002 xref: TAO:0005006 xref: VHOG:0000148 xref: XAO:0000343 xref: ZFA:0005006 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "The first and second arches disappear early, but the dorsal end of the second gives origin to the stapedial artery, a vessel which atrophies in humans but persists in some mammals. It passes through the ring of the stapes and divides into supraorbital, infraorbital, and mandibular branches which follow the three divisions of the trigeminal nerve. The infraorbital and mandibular arise from a common stem, the terminal part of which anastomoses with the external carotid. On the obliteration of the stapedial artery this anastomosis enlarges and forms the internal maxillary artery, and the branches of the stapedial artery are now branches of this vessel. The common stem of the infraorbital and mandibular branches passes between the two roots of the auriculotemporal nerve and becomes the middle meningeal artery; the original supraorbital branch of the stapedial is represented by the orbital twigs of the middle meningeal[WP][Wikipedia:Aortic_arches#Arches_1_and_2]." xsd:string {source="Arches_1_and_2"} property_value: UBPROP:0000001 "The second in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 2 that is part of hyoid arch.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010418", ontology="AAO", source="ISBN:0-02-377110-0"} [Term] id: UBERON:0003120 name: pharyngeal arch artery 3 namespace: uberon alt_id: UBERON:0004352 def: "The vessels formed within the third pair of branchial arches in embryogenesis" [MP:0006356] subset: pheno_slim subset: vertebrate_core synonym: "3rd aortic arch artery" RELATED [EMAPA:16687] synonym: "3rd arch artery" EXACT [EHDAA2:0000070] synonym: "3rd branchial arch artery" RELATED [EMAPA:16687] synonym: "3rd pharyngeal arch artery" RELATED [EMAPA:16687] synonym: "AA3" EXACT [ZFA:0005007] synonym: "aortic arch 3" EXACT [ZFA:0005007] synonym: "carotid arch" EXACT [http://en.wikipedia.org/wiki/Aortic_arches#Arch_3] synonym: "third aortic arch" EXACT [XAO:0000344] synonym: "third branchial arch artery" EXACT [] xref: AAO:0010419 xref: Arch_3 xref: EHDAA2:0000070 xref: EMAPA:16687 xref: http://www.snomedbrowser.com/Codes/Details/308776001 xref: TAO:0005007 xref: VHOG:0000147 xref: XAO:0000344 xref: ZFA:0005007 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "Aortic arches 3 and 4 are not remodeled but are retained largely intact as the branchial arteries providing circulation through the gills. These areches are direct branches from the ventral aorta to the lateral dorsal aorta. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005007", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The third aortic arch constitutes the commencement of the internal carotid artery, and is therefore named the carotid arch[WP][Wikipedia:Aortic_arches#Arch_3]." xsd:string {source="Arch_3"} property_value: UBPROP:0000001 "The third in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 3 lies within the 3rd branchial arch and branches directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010419", ontology="AAO", source="ISBN:0-02-377110-0"} [Term] id: UBERON:0003121 name: pharyngeal arch artery 4 namespace: uberon alt_id: UBERON:0004350 def: "The vessels formed within the fourth pair of branchial arches in embryogenesis" [MP:0006354] comment: proximal right subclavian subset: pheno_slim subset: vertebrate_core synonym: "4th aortic arch artery" RELATED [EMAPA:17004] synonym: "4th arch artery" EXACT [EHDAA2:0000087] synonym: "4th branchial arch artery" RELATED [EMAPA:17004] synonym: "4th pharyngeal arch artery" RELATED [EMAPA:17004] synonym: "AA4" EXACT [ZFA:0005008] synonym: "aortic arch 4" EXACT [ZFA:0005008] synonym: "fourth aortic arch" EXACT [XAO:0000355] synonym: "fourth branchial arch artery" EXACT [] synonym: "systemic arch" RELATED [ISBN:0073040584, XAO:0000355] xref: AAO:0010420 xref: Arch_4 xref: EHDAA2:0000087 xref: EMAPA:17004 xref: http://www.snomedbrowser.com/Codes/Details/308777005 xref: TAO:0005008 xref: XAO:0000355 xref: ZFA:0005008 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "Aortic arches 3 and 4 are not remodeled but are retained largely intact as the branchial arteries providing circulation through the gills. These areches are direct branches from the ventral aorta to the lateral dorsal aorta. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005008", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The forth in a series paired arterial connections between the dorsal and ventral aortae, lies within the 4th branchial arch. The paired aortic arch 4 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010420", ontology="AAO", source="ISBN:0-02-377110-0"} property_value: UBPROP:0000001 "The fourth right arch forms the right subclavian as far as the origin of its internal mammary branch; while the fourth left arch constitutes the arch of the aorta between the origin of the left carotid artery and the termination of the ductus arteriosus[WP][Wikipedia:Aortic_arches#Arch_4]." xsd:string {source="Arch_4"} property_value: UBPROP:0000011 "Normally, the left fourth arch becomes the aortic arch, the right fourth arch contributes to the innominate artery[http://emedicine.medscape.com/article/899609-overview] in birds it is the right fourth arch which forms the permanent aorta" xsd:string [Term] id: UBERON:0003122 name: pharyngeal arch artery 5 namespace: uberon def: "The vessels formed within the fifth pair of pharyngeal arches in embryogenesis." [http://orcid.org/0000-0002-6601-2165] subset: vertebrate_core synonym: "AA5" EXACT [ZFA:0005009] synonym: "aortic arch 5" EXACT [ZFA:0005009] synonym: "fifth aortic arch" EXACT [XAO:0000352] xref: AAO:0010421 xref: Arch_5 xref: http://www.snomedbrowser.com/Codes/Details/308778000 xref: TAO:0005009 xref: VHOG:0000145 xref: XAO:0000352 xref: ZFA:0005009 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "The fifth and sixth arches, which come on-line at approximately 2.5 dpf, have a common trunk from the ventral aorta and drain to the midline dorsal aorta via an independent route. The fifth and sixth aortic arches supply the trunk and tail with oxigenated blood. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005009", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The fifth arch disappears on both sides[WP][Wikipedia:Aortic_arches#Arch_5]." xsd:string {source="Arch_5"} property_value: UBPROP:0000001 "The fifth in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 5 artery is paired and has a common trunk with aortic arch 6 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010421", ontology="AAO", source="ISBN:0-02-377110-0"} property_value: UBPROP:0000008 "In humans the 5th arch disappears on both sides" xsd:string [Term] id: UBERON:0003123 name: pharyngeal arch artery 6 namespace: uberon alt_id: UBERON:0004351 def: "The vessels formed within the sixth pair of branchial arches in embryogenesis" [MP:0006355] subset: pheno_slim subset: vertebrate_core synonym: "6th aortic arch artery" RELATED [EMAPA:17005] synonym: "6th arch artery" EXACT [EMAPA:17005] synonym: "6th branchial arch artery" RELATED [EMAPA:17005] synonym: "6th pharyngeal arch artery" RELATED [EMAPA:17005] synonym: "AA6" EXACT [ZFA:0005016] synonym: "aortic arch 6" EXACT [ZFA:0005016] synonym: "pulmonary arch" RELATED [ISBN:0073040584] synonym: "sixth aortic arch" EXACT [XAO:0000353] synonym: "sixth branchial arch artery" EXACT [] xref: AAO:0010422 xref: Arch_6 xref: EHDAA2:0000102 xref: EMAPA:17005 xref: http://www.snomedbrowser.com/Codes/Details/308779008 xref: TAO:0005016 xref: VHOG:0000144 xref: XAO:0000353 xref: ZFA:0005016 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "The fifth and sixth arches, which come on-line at approximately 2.5 dpf, have a common trunk from the ventral aorta and drain to the midline dorsal aorta via an independent route. The fifth and sixth aortic arches supply the trunk and tail with oxigenated blood. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005016", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The sixth in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 6 artery is paired and has a common trunk with aortic arch 5 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. It forms part of the pulmonary arteries, and in the later embryo, the ductus arteriosis. Aortic arches 5 and 6 together supply the trunk and tail with oxygenated blood.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010422", ontology="AAO", source="ISBN:0-02-377110-0"} property_value: UBPROP:0000001 "The sixth right arch disappears; the sixth left arch gives off the pulmonary arteries and forms the ductus arteriosus; this duct remains pervious during the whole of fetal life, but then closes within the first few days after birth due to increased O2 concentration. Oxygen concentration causes the production of bradykinin which causes the ductus to constrict occluding all flow. Within 1-3 months, the ductus is obliterated and becomes the ligamentum arteriosus. His showed that in the early embryo the right and left arches each gives a branch to the lungs, but that later both pulmonary arteries take origin from the left arch[WP][Wikipedia:Aortic_arches#Arch_6]." xsd:string {source="Arch_6"} property_value: UBPROP:0000011 "the distal left sixth arch becomes the ductus arteriosus, the proximal sixth arches bilaterally contribute to the proximal branch pulmonary arteries" xsd:string {source="http://emedicine.medscape.com/article/899609-overview"} [Term] id: UBERON:0003210 name: blood-cerebrospinal fluid barrier namespace: uberon def: "barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]." [MP:0006088] subset: pheno_slim synonym: "blood-CSF barrier" EXACT [MP:0006088] relationship: part_of UBERON:0001886 ! choroid plexus [Term] id: UBERON:0003282 name: mesentery of heart namespace: uberon def: "A mesentery that surrounds the heart." [MA:th] synonym: "cardiac mesentery" RELATED [EMAPA:16212] synonym: "heart mesentery" EXACT [OBOL:automatic] synonym: "mesocardium" RELATED [MA:0000098] xref: EHDAA:432 xref: EMAPA:16212 xref: RETIRED_EHDAA2:0000739 xref: VHOG:0000353 relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0003304 name: mesoderm blood island namespace: uberon alt_id: UBERON:0003305 def: "A blood island that is part of a mesoderm." [OBOL:automatic] synonym: "mesenchyme blood island" RELATED [OBOL:automatic] synonym: "mesoderm blood islands" EXACT PLURAL [EHDAA2:0003241] xref: EHDAA2:0003241 xref: EHDAA:170 xref: EMAPA:16115 relationship: part_of UBERON:0007798 {source="EHDAA2"} ! vascular system property_value: UBPROP:0000012 "in EHDAA2, gives rise to blood and dorsal aorta" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0003369 name: fossa ovalis of heart namespace: uberon def: "Found in the right atrium of the heart, the fossa ovalis is an embryonic remnant of the foramen ovale, which normally closes shortly after birth. In a heart specimen of a neonate, the fossa ovalis is translucent, but later in life the membrane thickens." [http://en.wikipedia.org/wiki/Fossa_ovalis_(heart)] synonym: "fossa ovalis" EXACT [FMA:9246] synonym: "oval fossa" EXACT [FMA:9246] xref: FMA:9246 xref: http://en.wikipedia.org/wiki/Fossa_ovalis_(heart) xref: http://www.snomedbrowser.com/Codes/Details/277719009 relationship: develops_from UBERON:0004754 {source="Wikipedia"} ! foramen ovale of heart relationship: part_of UBERON:0002078 ! right cardiac atrium [Term] id: UBERON:0003378 name: cardiac muscle of auricular region namespace: uberon def: "A cardiac muscle tissue that is part of a atrium auricular region." [OBOL:automatic] synonym: "atrium auricular region cardiac muscle" EXACT [EMAPA:36056] synonym: "auricular region heart muscle" EXACT [] synonym: "cardiac muscle tissue of auricle" EXACT [FMA:84279] xref: EMAPA:36056 xref: FMA:84279 is_a: UBERON:0004490 ! cardiac muscle tissue of atrium intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0006618 ! atrium auricular region relationship: part_of UBERON:0006618 ! atrium auricular region [Term] id: UBERON:0003379 name: cardiac muscle of right atrium namespace: uberon def: "A portion of cardiac muscle tissue that is part of a right atrium [Automatically generated definition]." [OBOL:automatic] synonym: "cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium of right atrium" EXACT [] synonym: "right atrium heart muscle" EXACT [EHDAA2:0004155] synonym: "right atrium myocardium" EXACT [VHOG:0001227] synonym: "textus muscularis of myocardium of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of right cardiac atrium" EXACT [OBOL:automatic] xref: EHDAA2:0004155 xref: EMAPA:17326 xref: FMA:7282 xref: http://www.snomedbrowser.com/Codes/Details/362018002 xref: VHOG:0001227 is_a: UBERON:0004490 ! cardiac muscle tissue of atrium intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium [Term] id: UBERON:0003380 name: cardiac muscle of left atrium namespace: uberon def: "A portion of cardiac muscle tissue that is part of a left atrium [Automatically generated definition]." [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "left atrium heart muscle" EXACT [EHDAA2:0004154] synonym: "left atrium myocardium" EXACT [VHOG:0001225] synonym: "myocardium of left atrium" EXACT [] synonym: "textus muscularis of myocardium of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of left cardiac atrium" EXACT [OBOL:automatic] xref: EHDAA2:0004154 xref: EMAPA:17320 xref: FMA:7285 xref: http://www.snomedbrowser.com/Codes/Details/189936008 xref: VHOG:0001225 is_a: UBERON:0004490 ! cardiac muscle tissue of atrium intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002079 ! left cardiac atrium relationship: part_of UBERON:0002079 ! left cardiac atrium [Term] id: UBERON:0003381 name: cardiac muscle of right ventricle namespace: uberon def: "A portion of cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "cardiac muscle tissue of right ventricle" EXACT [FMA:83452] synonym: "right ventricle cardiac muscle" RELATED [VHOG:0001236] synonym: "right ventricular cardiac muscle tissue" EXACT [GO:0003221] xref: EMAPA:17342 xref: FMA:83452 xref: VHOG:0001236 is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0003382 name: cardiac muscle of left ventricle namespace: uberon def: "A portion of cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "cardiac muscle tissue of left ventricle" EXACT [FMA:83453] synonym: "left ventricle cardiac muscle" RELATED [VHOG:0001234] synonym: "left ventricular cardiac muscle tissue" EXACT [GO:0003220] xref: EMAPA:17339 xref: FMA:83453 xref: VHOG:0001234 is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0003383 name: cardiac muscle tissue of interventricular septum namespace: uberon def: "A portion of cardiac muscle tissue that is part of an interventricular septum [Automatically generated definition]." [OBOL:automatic] synonym: "cardiac muscle of interventricular septum" EXACT [] synonym: "cardiac muscle tissue of interventricular septum" EXACT [FMA:84084] synonym: "interventricular septum cardiac muscle" EXACT [VHOG:0000999] synonym: "interventricular septum heart muscle" EXACT [EHDAA2:0004158] synonym: "interventricular septum muscle" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "interventricular septum myocardium" EXACT [VHOG:0000999] xref: EHDAA2:0004158 xref: EMAPA:17335 xref: FMA:84084 xref: VHOG:0000999 is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum is_a: UBERON:0004667 ! interventricular septum muscular part intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002094 ! interventricular septum [Term] id: UBERON:0003388 name: mesothelium of pericardial cavity namespace: uberon def: "A mesothelium that is part of a pericardium [Automatically generated definition]." [OBOL:automatic] synonym: "cavity of pericardial sac meso-epithelium" EXACT [OBOL:automatic] synonym: "cavity of pericardial sac mesothelium" EXACT [OBOL:automatic] synonym: "meso-epithelium of cavity of pericardial sac" EXACT [OBOL:automatic] synonym: "meso-epithelium of pericardial cavity" EXACT [OBOL:automatic] synonym: "mesothelium of cavity of pericardial sac" EXACT [OBOL:automatic] synonym: "pericardial cavity meso-epithelium" EXACT [OBOL:automatic] synonym: "pericardial cavity mesothelium" EXACT [OBOL:automatic] xref: RETIRED_EHDAA2:0001436 relationship: part_of UBERON:0002407 ! pericardium [Term] id: UBERON:0003452 name: trabecula carnea cardiac muscle tissue namespace: uberon def: "A portion of cardiac muscle tissue that is part of a trabecula carnea [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "cardiac muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "trabecula carnea cardiac muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "trabecula carnea myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of myocardium" EXACT [OBOL:automatic] xref: EMAPA:36573 xref: FMA:84428 xref: MA:0002833 is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002511 ! trabecula carnea relationship: part_of UBERON:0002511 ! trabecula carnea [Term] id: UBERON:0003456 name: respiratory system lymphatic vessel namespace: uberon def: "A lymphatic vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius lymph vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymphatic vessel" EXACT [OBOL:automatic] synonym: "lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymph vessel of respiratory system" EXACT [OBOL:automatic] synonym: "lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymphatic vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system lymph vessel" EXACT [OBOL:automatic] xref: EMAPA:37580 {source="MA:th"} xref: MA:0001824 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0003468 name: ureteric segment of renal artery namespace: uberon def: "The ureteral branches of renal artery are small branches which supply the ureter." [http://en.wikipedia.org/wiki/Ureteral_branches_of_renal_artery] synonym: "ureteric artery" BROAD [MA:0002074] xref: EMAPA:37676 {source="MA:th"} xref: FMA:70491 xref: http://en.wikipedia.org/wiki/Ureteral_branches_of_renal_artery xref: http://www.snomedbrowser.com/Codes/Details/65376008 xref: MA:0002074 is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001184 {source="FMA"} ! renal artery relationship: part_of UBERON:0001184 {source="FMA"} ! renal artery [Term] id: UBERON:0003469 name: respiratory system artery namespace: uberon def: "An artery that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37569 {source="MA:th"} xref: MA:0001804 is_a: UBERON:0001637 ! artery is_a: UBERON:0003643 ! respiratory system arterial blood vessel [Term] id: UBERON:0003470 name: artery of upper lip namespace: uberon def: "The superior labial artery (superior labial branch of facial artery) is larger and more tortuous than the inferior labial artery. It follows a similar course along the edge of the upper lip, lying between the mucous membrane and the Orbicularis oris, and anastomoses with the artery of the opposite side. It supplies the upper lip, and gives off in its course two or three vessels which ascend to the nose; a septal branch ramifies on the nasal septum as far as the point of the nose, and an alar branch supplies the ala of the nose." [http://en.wikipedia.org/wiki/Superior_labial_artery] synonym: "arteria labialis superior" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_labial_artery] synonym: "ramus labialis superior arteriae facialis" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_labial_artery] synonym: "superior labial artery" EXACT [FMA:49570] synonym: "superior labial branch of facial artery" EXACT [FMA:49570] xref: EMAPA:37430 {source="MA:th"} xref: FMA:49570 xref: http://en.wikipedia.org/wiki/Superior_labial_artery xref: http://www.snomedbrowser.com/Codes/Details/145137009 xref: MA:0001917 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009657 ! artery of lip relationship: branching_part_of UBERON:0001612 {source="FMA"} ! facial artery relationship: part_of UBERON:0001612 ! facial artery [Term] id: UBERON:0003471 name: artery of lower lip namespace: uberon def: "The Iinferior labial artery (inferior labial branch of facial artery) arises near the angle of the mouth; it passes upward and forward beneath the Triangularis and, penetrating the Orbicularis oris, runs in a tortuous course along the edge of the lower lip between this muscle and the mucous membrane. It supplies the labial glands, the mucous membrane, and the muscles of the lower lip; and anastomoses with the artery of the opposite side, and with the mental branch of the inferior alveolar artery." [http://en.wikipedia.org/wiki/Inferior_labial_artery] synonym: "arteria labialis inferior" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_labial_artery] synonym: "inferior labial artery" EXACT [FMA:49567] synonym: "inferior labial branch of facial artery" EXACT [FMA:49567] synonym: "ramus labialis inferior (arteria facialis)" EXACT [FMA:TA] synonym: "ramus labialis inferior arteriae facialis" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_labial_artery] xref: EMAPA:37429 {source="MA:th"} xref: FMA:49567 xref: http://en.wikipedia.org/wiki/Inferior_labial_artery xref: http://www.snomedbrowser.com/Codes/Details/145036002 xref: MA:0001916 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009657 ! artery of lip relationship: branching_part_of UBERON:0001612 {source="FMA"} ! facial artery relationship: part_of UBERON:0001612 ! facial artery [Term] id: UBERON:0003472 name: cerebellar artery namespace: uberon def: "An artery that supplies blood to the cerebellum." [http://en.wikipedia.org/wiki/Cerebellar_artery] xref: Cerebellar:artery xref: EHDAA2:0000228 xref: EHDAA:5290 xref: EMAPA:37074 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C0226246 xref: http://www.snomedbrowser.com/Codes/Details/278102002 xref: MA:0001933 xref: NCIT:C52845 xref: UMLS:C0226246 {source="ncithesaurus:Cerebellar_Artery"} is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg [Term] id: UBERON:0003473 name: thoracic cavity artery namespace: uberon def: "An artery that is part of a thoracic cavity[cjm]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3317815&group_id=76834&atid=1205376] synonym: "thoracic artery" RELATED [MESH:A07.231.114.891] xref: EMAPA:37241 {source="MA:th"} xref: MA:0001902 xref: MESH:D013895 is_a: UBERON:0001637 ! artery is_a: UBERON:0003519 ! thoracic cavity blood vessel property_value: UBPROP:0000012 "in MA, aorta is classified here - but this is problematic because the abdominal aorta is not in the thoracic cavity" xsd:string {external_ontology="MA"} [Term] id: UBERON:0003474 name: meningeal artery namespace: uberon def: "One of the arteries supplying a meninix[Automatically generated definition]." [http://en.wikipedia.org/wiki/Meningeal_arteries] xref: EMAPA:37104 {source="MA:th"} xref: GAID:499 xref: MA:0002001 xref: Meningeal:arteries xref: MESH:D008576 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0003475 name: ureteric vein namespace: uberon def: "A vein that is part of a ureter [Automatically generated definition]." [OBOL:automatic] synonym: "ureter vein" EXACT [OBOL:automatic] synonym: "vein of ureter" EXACT [OBOL:automatic] xref: EMAPA:37679 {source="MA:th"} xref: MA:0002250 is_a: UBERON:0001638 ! vein is_a: UBERON:0003520 ! pelvis blood vessel [Term] id: UBERON:0003476 name: respiratory system venous blood vessel namespace: uberon def: "A vein that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius vein" EXACT [OBOL:automatic] synonym: "respiratory system vein" EXACT [OBOL:automatic] synonym: "vein of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "vein of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37584 {source="MA:th"} xref: MA:0001809 xref: MA:0001810 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003477 name: vein of upper lip namespace: uberon def: "The inferior labial vein is the vein receiving blood from the upper lip." [http://en.wikipedia.org/wiki/Superior_labial_vein] synonym: "superior labial vein" EXACT [FMA:52538] synonym: "upper lip vein" EXACT [OBOL:automatic] synonym: "vena labialis superior" EXACT LATIN [] xref: EMAPA:37204 {source="MA:th"} xref: FMA:52538 xref: http://en.wikipedia.org/wiki/Superior_labial_vein xref: http://www.snomedbrowser.com/Codes/Details/422755007 xref: MA:0002255 is_a: UBERON:0013136 ! vein of lip [Term] id: UBERON:0003478 name: vein of lower lip namespace: uberon def: "The inferior labial vein is the vein receiving blood from the lower lip." [http://en.wikipedia.org/wiki/Inferior_labial_vein] synonym: "inferior labial vein" EXACT [FMA:52541] synonym: "lower lip vein" EXACT [OBOL:automatic] synonym: "vena labialis inferior" EXACT LATIN [] synonym: "venae labiales inferiores" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_labial_vein] xref: EMAPA:37202 {source="MA:th"} xref: FMA:52541 xref: http://en.wikipedia.org/wiki/Inferior_labial_vein xref: http://www.snomedbrowser.com/Codes/Details/422955002 xref: MA:0002253 is_a: UBERON:0013136 ! vein of lip property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png [Term] id: UBERON:0003479 name: thoracic cavity vein namespace: uberon def: "A vein that is part of a thoracic cavity [Automatically generated definition]." [OBOL:automatic] synonym: "cavity of chest vein" EXACT [OBOL:automatic] synonym: "cavity of thorax vein" EXACT [OBOL:automatic] synonym: "chest cavity vein" EXACT [OBOL:automatic] synonym: "pectoral cavity vein" EXACT [OBOL:automatic] synonym: "vein of cavity of chest" EXACT [OBOL:automatic] synonym: "vein of cavity of thorax" EXACT [OBOL:automatic] synonym: "vein of chest cavity" EXACT [OBOL:automatic] synonym: "vein of pectoral cavity" EXACT [OBOL:automatic] synonym: "vein of thoracic cavity" EXACT [OBOL:automatic] xref: EMAPA:37242 {source="MA:th"} xref: MA:0001903 is_a: UBERON:0001638 ! vein is_a: UBERON:0003519 ! thoracic cavity blood vessel [Term] id: UBERON:0003480 name: vein of clitoris namespace: uberon def: "A vein that is part of a clitoris [Automatically generated definition]." [OBOL:automatic] synonym: "clitoris vein" EXACT [OBOL:automatic] xref: EMAPA:37201 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/360819004 xref: MA:0002252 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003481 name: tail vein namespace: uberon def: "A vein that is part of a tail [Automatically generated definition]." [http://en.wikipedia.org/wiki/Tail_vein, OBOL:automatic] synonym: "caudal vein" RELATED [http://en.wikipedia.org/wiki/Tail_vein] synonym: "post-vent region vein" EXACT [OBOL:automatic] synonym: "vein of post-vent region" EXACT [OBOL:automatic] synonym: "vein of tail" EXACT [OBOL:automatic] xref: AAO:0011105 xref: EMAPA:37761 {source="MA:th"} xref: MA:0002233 xref: Tail:vein xref: XAO:0000393 is_a: UBERON:0001638 ! vein is_a: UBERON:0003524 ! tail blood vessel property_value: IAO:0000116 "see also caudal vein" xsd:string [Term] id: UBERON:0003482 name: vein of trabecular bone namespace: uberon def: "A portion of vein that is part of a trabecular bone tissue [Automatically generated definition]." [OBOL:automatic] synonym: "spongy bone vein" EXACT [OBOL:automatic] synonym: "trabecular bone tissue vein" EXACT [OBOL:automatic] synonym: "trabecular bone vein" EXACT [OBOL:automatic] synonym: "vein of spongy bone" EXACT [OBOL:automatic] synonym: "vein of trabecular bone tissue" EXACT [OBOL:automatic] xref: EMAPA:37203 {source="MA:th"} xref: MA:0002254 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003489 name: respiratory system capillary endothelium namespace: uberon def: "An endothelium of capillary that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius blood capillary endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of capillary vessel" EXACT [OBOL:automatic] synonym: "blood capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood capillary endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "capillary vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of capillary of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system blood capillary endothelium" EXACT [OBOL:automatic] synonym: "respiratory system capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of capillary" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of capillary vessel" EXACT [OBOL:automatic] xref: EMAPA:37575 {source="MA:th"} xref: MA:0001808 is_a: UBERON:0001915 ! endothelium of capillary is_a: UBERON:0004702 ! respiratory system blood vessel endothelium relationship: part_of UBERON:0003526 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system capillary [Term] id: UBERON:0003494 name: respiratory system venule namespace: uberon def: "A venule that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius venule" EXACT [OBOL:automatic] synonym: "venule of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "venule of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37587 {source="MA:th"} xref: MA:0001813 is_a: UBERON:0001979 ! venule is_a: UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0003495 name: respiratory system arteriole namespace: uberon def: "An arteriole that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37568 {source="MA:th"} xref: MA:0001803 is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003643 ! respiratory system arterial blood vessel relationship: part_of UBERON:0003469 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system artery [Term] id: UBERON:0003496 name: head blood vessel namespace: uberon def: "A blood vessel that is part of a head [Automatically generated definition]." [OBOL:automatic] synonym: "adult head blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of adult head" EXACT [OBOL:automatic] synonym: "blood vessel of head" EXACT [OBOL:automatic] xref: EMAPA:36610 xref: http://www.snomedbrowser.com/Codes/Details/127865000 xref: MA:0000575 is_a: UBERON:0001981 ! blood vessel relationship: part_of UBERON:0011362 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! cranial blood vasculature [Term] id: UBERON:0003497 name: abdomen blood vessel namespace: uberon def: "A blood vessel that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of abdomen" EXACT [OBOL:automatic] xref: MA:0000518 is_a: UBERON:0003835 ! abdominal segment blood vessel property_value: seeAlso UBERON:0012254 xsd:string {notes="abdominal aorta artery"} [Term] id: UBERON:0003498 name: heart blood vessel namespace: uberon def: "A blood vessel that is part of a heart [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blood vessel of heart" EXACT [OBOL:automatic] synonym: "cardiac blood vessel" RELATED [EMAPA:35397] xref: EMAPA:35397 xref: MA:0002483 is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0005985 ! coronary vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0018674 ! heart vasculature [Term] id: UBERON:0003499 name: brain blood vessel namespace: uberon def: "A blood vessel that is part of a brain [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blood vessel of brain" EXACT [OBOL:automatic] xref: EMAPA:35182 xref: MA:0002769 is_a: UBERON:0001981 ! blood vessel relationship: part_of UBERON:0008998 ! vasculature of brain [Term] id: UBERON:0003500 name: corneal blood vessel namespace: uberon def: "A blood vessel that is part of a cornea [Automatically generated definition]." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/index.php?func=detail&aid=3564332&group_id=36855&atid=440764] synonym: "blood vessel of cornea" EXACT [OBOL:automatic] synonym: "cornea blood vessel" EXACT [OBOL:automatic] xref: EMAPA:36611 xref: MA:0001241 is_a: UBERON:0003496 ! head blood vessel property_value: IAO:0000116 "follow up on tracker item" xsd:string property_value: RO:0002175 NCBITaxon:9775 {source="http://www.ncbi.nlm.nih.gov/pubmed/17051153"} [Term] id: UBERON:0003501 name: retina blood vessel namespace: uberon def: "A blood vessel that is part of a retina [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blood vessel of inner layer of eyeball" EXACT [OBOL:automatic] synonym: "blood vessel of retina" EXACT [OBOL:automatic] synonym: "blood vessel of tunica interna of eyeball" EXACT [OBOL:automatic] synonym: "inner layer of eyeball blood vessel" EXACT [OBOL:automatic] synonym: "retinal blood vessel" EXACT [OBOL:automatic] synonym: "tunica interna of eyeball blood vessel" EXACT [OBOL:automatic] xref: EMAPA:36520 xref: GAID:509 xref: http://www.snomedbrowser.com/Codes/Details/280692003 xref: MA:0001317 xref: MESH:D012171 xref: XAO:0004153 is_a: UBERON:0003496 ! head blood vessel relationship: part_of UBERON:0004864 ! vasculature of retina [Term] id: UBERON:0003502 name: neck blood vessel namespace: uberon def: "A blood vessel that is part of a neck [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of neck" EXACT [OBOL:automatic] synonym: "blood vessel of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) blood vessel" EXACT [OBOL:automatic] xref: EMAPA:37236 {source="MA:th"} xref: MA:0000583 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003503 name: leg blood vessel namespace: uberon def: "A blood vessel that is part of a leg [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of leg" EXACT [OBOL:automatic] xref: EMAPA:36500 xref: MA:0000669 is_a: UBERON:0003516 ! hindlimb blood vessel [Term] id: UBERON:0003504 name: respiratory system blood vessel namespace: uberon def: "A blood vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood vessel of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:35731 xref: EMAPA:35995 xref: MA:0001799 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003505 name: trachea blood vessel namespace: uberon alt_id: UBERON:0003525 def: "A blood vessel that is part of a trachea." [OBOL:automatic] synonym: "blood vessel of trachea" EXACT [OBOL:automatic] xref: EMAPA:35874 xref: MA:0001852 is_a: UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0003506 name: chest blood vessel namespace: uberon def: "A blood vessel that is part of a chest [Automatically generated definition]." [OBOL:automatic] synonym: "anterior thoracic region blood vessel" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anterior thoracic region" EXACT [OBOL:automatic] synonym: "blood vessel of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "blood vessel of chest" EXACT [OBOL:automatic] synonym: "blood vessel of front of thorax" EXACT [OBOL:automatic] synonym: "front of thorax blood vessel" EXACT [OBOL:automatic] xref: EMAPA:37239 {source="MA:th"} xref: MA:0000549 is_a: UBERON:0003834 ! thoracic segment blood vessel [Term] id: UBERON:0003507 name: arm blood vessel namespace: uberon def: "A blood vessel that is part of an arm [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of arm" EXACT [OBOL:automatic] xref: EMAPA:37293 {source="MA:th"} xref: MA:0000591 is_a: UBERON:0003515 ! forelimb blood vessel [Term] id: UBERON:0003508 name: pedal digit blood vessel namespace: uberon def: "A blood vessel that is part of a toe [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of digit of foot" EXACT [OBOL:automatic] synonym: "blood vessel of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "blood vessel of digitus pedis" EXACT [OBOL:automatic] synonym: "blood vessel of foot digit" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "blood vessel of toe" EXACT [OBOL:automatic] synonym: "digit of foot blood vessel" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb blood vessel" EXACT [OBOL:automatic] synonym: "digitus pedis blood vessel" EXACT [OBOL:automatic] synonym: "foot digit blood vessel" EXACT [MA:0000645] synonym: "foot digit blood vessel" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit blood vessel" EXACT [OBOL:accepted] synonym: "terminal segment of free lower limb digit blood vessel" EXACT [OBOL:automatic] synonym: "toe blood vessel" EXACT [OBOL:automatic] xref: EMAPA:37302 {source="MA:th"} xref: MA:0000645 is_a: UBERON:0003521 ! pes blood vessel [Term] id: UBERON:0003509 name: arterial blood vessel namespace: uberon def: "A blood vessel that is part of the arterial system. Includes artery, arteriole and aorta." [https://orcid.org/0000-0002-6601-2165] comment: only in MA - supertype of artery, arteriole, aorta. subset: pheno_slim xref: EMAPA:35144 xref: MA:0000061 is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0004572 ! arterial system relationship: part_of UBERON:0004572 ! arterial system [Term] id: UBERON:0003510 name: eyelid blood vessel namespace: uberon def: "A blood vessel that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] synonym: "blepharon blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of blepharon" EXACT [OBOL:automatic] synonym: "blood vessel of eyelid" EXACT [OBOL:automatic] xref: EMAPA:37388 {source="MA:th"} xref: MA:0001250 is_a: UBERON:0003496 ! head blood vessel [Term] id: UBERON:0003511 name: iris blood vessel namespace: uberon def: "A blood vessel that is part of a iris [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "blood vessel of iris" EXACT [OBOL:automatic] xref: EMAPA:37387 {source="MA:th"} xref: MA:0001290 xref: ZFA:0005568 is_a: UBERON:0003496 ! head blood vessel relationship: part_of UBERON:0004118 ! vasculature of iris [Term] id: UBERON:0003512 name: lung blood vessel namespace: uberon def: "A blood vessel that is part of a lung [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blood vessel of lung" EXACT [OBOL:automatic] synonym: "pulmonary vascular element" RELATED [EMAPA:32867] xref: EMAPA:32867 xref: MA:0002457 is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003834 ! thoracic segment blood vessel [Term] id: UBERON:0003513 name: trunk blood vessel namespace: uberon def: "A blood vessel that is part of a trunk [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of torso" EXACT [OBOL:automatic] synonym: "blood vessel of trunk" EXACT [OBOL:automatic] synonym: "torso blood vessel" EXACT [OBOL:automatic] xref: EMAPA:37237 {source="MA:th"} xref: MA:0000511 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003514 name: limb blood vessel namespace: uberon def: "A blood vessel that is part of a limb [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of limb" EXACT [OBOL:automatic] xref: EMAPA:36598 xref: MA:0000687 is_a: UBERON:0007301 ! appendage blood vessel [Term] id: UBERON:0003515 name: forelimb blood vessel namespace: uberon def: "A blood vessel that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] synonym: "anteriormost limb blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anteriormost limb" EXACT [OBOL:automatic] synonym: "blood vessel of fore limb" EXACT [OBOL:automatic] synonym: "blood vessel of forelimb" EXACT [OBOL:automatic] synonym: "blood vessel of upper extremity" EXACT [OBOL:automatic] synonym: "fore limb blood vessel" EXACT [OBOL:automatic] synonym: "wing blood vessel" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: EMAPA:37292 {source="MA:th"} xref: MA:0000611 is_a: UBERON:0003514 ! limb blood vessel is_a: UBERON:0007300 ! pectoral appendage blood vessel [Term] id: UBERON:0003516 name: hindlimb blood vessel namespace: uberon def: "A blood vessel that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb blood vessel" EXACT [OBOL:automatic] xref: EMAPA:37298 {source="MA:th"} xref: MA:0000659 is_a: UBERON:0003514 ! limb blood vessel [Term] id: UBERON:0003517 name: kidney blood vessel namespace: uberon def: "A blood vessel that is part of a kidney [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim subset: vertebrate_core synonym: "blood vessel of kidney" EXACT [OBOL:automatic] synonym: "renal blood vessel" EXACT [OBOL:automatic] xref: EMAPA:28457 xref: MA:0001682 xref: TAO:0005306 xref: ZFA:0005306 is_a: UBERON:0003497 ! abdomen blood vessel relationship: part_of UBERON:0006544 ! kidney vasculature [Term] id: UBERON:0003518 name: main bronchus blood vessel namespace: uberon def: "A blood vessel that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of bronchus principalis" EXACT [OBOL:automatic] synonym: "blood vessel of main bronchus" EXACT [OBOL:automatic] synonym: "blood vessel of primary bronchus" EXACT [OBOL:automatic] synonym: "blood vessel of principal bronchus" EXACT [OBOL:automatic] synonym: "bronchus principalis blood vessel" EXACT [OBOL:automatic] synonym: "primary bronchus blood vessel" EXACT [OBOL:automatic] synonym: "primary bronchus vascular element" RELATED [EMAPA:16852] synonym: "principal bronchus blood vessel" EXACT [OBOL:automatic] synonym: "principal bronchus vascular element" RELATED [EMAPA:16852] xref: EMAPA:16852 xref: MA:0001844 is_a: UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0003519 name: thoracic cavity blood vessel namespace: uberon def: "A blood vessel that is part of a thoracic cavity [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of cavity of chest" EXACT [OBOL:automatic] synonym: "blood vessel of cavity of thorax" EXACT [OBOL:automatic] synonym: "blood vessel of chest cavity" EXACT [OBOL:automatic] synonym: "blood vessel of pectoral cavity" EXACT [OBOL:automatic] synonym: "blood vessel of thoracic cavity" EXACT [OBOL:automatic] synonym: "cavity of chest blood vessel" EXACT [OBOL:automatic] synonym: "cavity of thorax blood vessel" EXACT [OBOL:automatic] synonym: "chest cavity blood vessel" EXACT [OBOL:automatic] synonym: "pectoral cavity blood vessel" EXACT [OBOL:automatic] xref: EMAPA:37240 {source="MA:th"} xref: MA:0000554 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003520 name: pelvis blood vessel namespace: uberon def: "A blood vessel that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of pelvis" EXACT [OBOL:automatic] xref: EMAPA:37244 {source="MA:th"} xref: MA:0000531 is_a: UBERON:0003835 ! abdominal segment blood vessel [Term] id: UBERON:0003521 name: pes blood vessel namespace: uberon def: "A blood vessel that is part of a foot [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of foot" EXACT [OBOL:automatic] synonym: "foot blood vessel" EXACT [MA:0000642] xref: EMAPA:37301 {source="MA:th"} xref: MA:0000642 is_a: UBERON:0003516 ! hindlimb blood vessel [Term] id: UBERON:0003522 name: manual digit blood vessel namespace: uberon def: "A blood vessel that is part of a finger [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic] synonym: "finger blood vessel" EXACT [OBOL:automatic] synonym: "hand digit blood vessel" EXACT [MA:0000621] synonym: "hand digit blood vessel" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "terminal segment of free upper limb digit blood vessel" EXACT [OBOL:automatic] xref: EMAPA:37297 {source="MA:th"} xref: MA:0000621 is_a: UBERON:0003523 ! manus blood vessel [Term] id: UBERON:0003523 name: manus blood vessel namespace: uberon def: "A blood vessel that is part of a manus [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of hand" EXACT [OBOL:automatic] synonym: "blood vessel of manus" EXACT [OBOL:automatic] synonym: "hand blood vessel" EXACT [MA:0000618] xref: EMAPA:37296 {source="MA:th"} xref: MA:0000618 is_a: UBERON:0003515 ! forelimb blood vessel [Term] id: UBERON:0003524 name: tail blood vessel namespace: uberon def: "A blood vessel that is part of a tail [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of post-vent region" EXACT [OBOL:automatic] synonym: "blood vessel of tail" EXACT [OBOL:automatic] synonym: "post-vent region blood vessel" EXACT [OBOL:automatic] xref: EMAPA:35848 xref: MA:0000695 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003526 name: respiratory system capillary namespace: uberon def: "A capillary that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius blood capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary vessel" EXACT [OBOL:automatic] synonym: "blood capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood capillary of respiratory system" EXACT [OBOL:automatic] synonym: "capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary of respiratory system" EXACT [OBOL:automatic] synonym: "capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system blood capillary" EXACT [OBOL:automatic] synonym: "respiratory system capillary vessel" EXACT [OBOL:automatic] xref: EMAPA:37574 {source="MA:th"} xref: MA:0001807 is_a: UBERON:0001982 ! capillary is_a: UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0003527 name: kidney capillary namespace: uberon def: "A capillary that is part of a kidney [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blood capillary of kidney" EXACT [OBOL:automatic] synonym: "capillary of kidney" EXACT [OBOL:automatic] synonym: "capillary vessel of kidney" EXACT [OBOL:automatic] synonym: "kidney blood capillary" EXACT [OBOL:automatic] synonym: "kidney capillary vessel" EXACT [OBOL:automatic] synonym: "renal capillary" EXACT [OBOL:automatic] xref: EMAPA:31443 xref: http://www.snomedbrowser.com/Codes/Details/275409003 xref: MA:0002586 is_a: UBERON:0001982 ! capillary is_a: UBERON:0003517 ! kidney blood vessel [Term] id: UBERON:0003529 name: respiratory system lymphatic vessel endothelium namespace: uberon def: "An lymphatic vessel endothelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymph vessel endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymphatic vessel endothelium" EXACT [OBOL:automatic] synonym: "endothelium of lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of lymph vessel of respiratory system" EXACT [OBOL:automatic] synonym: "lymph vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymph vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "lymphatic vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymphatic vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "respiratory system lymph vessel endothelium" EXACT [OBOL:automatic] synonym: "respiratory system lymphatic vessel endothelium" EXACT [OBOL:automatic] xref: EMAPA:37581 {source="MA:th"} xref: MA:0001825 is_a: UBERON:0002042 ! lymphatic vessel endothelium relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel [Term] id: UBERON:0003609 name: aorta elastic tissue namespace: uberon def: "The dense connective tissue which contains predominantly elastic fibers and is found in the tunica media of the aorta wall." [MP:0009862] subset: pheno_slim synonym: "adult aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "adult aorta elastic tissue" EXACT [OBOL:automatic] synonym: "adult aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "aorta elastic lamina" EXACT [MP:0009862] synonym: "aorta elastic laminae" EXACT PLURAL [MP:0009862] synonym: "aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "dorsal aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "dorsal aorta elastic tissue" EXACT [OBOL:automatic] synonym: "dorsal aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of adult aorta" EXACT [OBOL:automatic] synonym: "elastic connective tissue of aorta" EXACT [OBOL:automatic] synonym: "elastic connective tissue of dorsal aorta" EXACT [OBOL:automatic] synonym: "elastic connective tissue of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "elastic tissue of adult aorta" EXACT [OBOL:automatic] synonym: "elastic tissue of aorta" EXACT [OBOL:automatic] synonym: "elastic tissue of dorsal aorta" EXACT [OBOL:automatic] synonym: "elastic tissue of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of adult aorta" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of aorta" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of dorsal aorta" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "trunk of aortic tree elastic connective tissue" EXACT [OBOL:automatic] synonym: "trunk of aortic tree elastic tissue" EXACT [OBOL:automatic] synonym: "trunk of aortic tree textus connectivus elasticus" EXACT [OBOL:automatic] xref: MA:0002859 is_a: UBERON:0003614 ! blood vessel elastic tissue relationship: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0003610 name: heart elastic tissue namespace: uberon def: "The type of heart connective tissue found in the endocardial layer that consists mainly of elastic fibers." [MP:0009863] subset: pheno_slim synonym: "cardiac elastic tissue" EXACT [MP:0009863] synonym: "elastic connective tissue of heart" EXACT [OBOL:automatic] synonym: "elastic tissue of heart" EXACT [OBOL:automatic] synonym: "heart elastic connective tissue" EXACT [OBOL:automatic] synonym: "heart textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of heart" EXACT [OBOL:automatic] xref: MA:0002858 is_a: UBERON:0003613 ! cardiovascular system elastic tissue relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0003613 name: cardiovascular system elastic tissue namespace: uberon def: "An elastic tissue that is part of a circulatory system [Automatically generated definition]." [OBOL:automatic] synonym: "cardiovascular system elastic connective tissue" EXACT [OBOL:automatic] synonym: "cardiovascular system textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "circulatory system elastic connective tissue" EXACT [OBOL:automatic] synonym: "circulatory system elastic tissue" EXACT [OBOL:automatic] synonym: "circulatory system textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of cardiovascular system" EXACT [OBOL:automatic] synonym: "elastic connective tissue of circulatory system" EXACT [OBOL:automatic] synonym: "elastic tissue of cardiovascular system" EXACT [OBOL:automatic] synonym: "elastic tissue of circulatory system" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of cardiovascular system" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of circulatory system" EXACT [OBOL:automatic] xref: MA:0002857 relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0003614 name: blood vessel elastic tissue namespace: uberon def: "Elastic tissue layer that lines a blood vessel layer." [http://orcid.org/0000-0002-6601-2165, https://sourceforge.net/p/obo/mammalian-phenotype-requests/2026/] subset: pheno_slim synonym: "blood vessel elastic connective tissue" EXACT [OBOL:automatic] synonym: "blood vessel textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of blood vessel" EXACT [OBOL:automatic] synonym: "elastic lamina" BROAD [MP:0006083] synonym: "elastic laminae" BROAD PLURAL [MP:0006083] synonym: "elastic tissue of blood vessel" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of blood vessel" EXACT [OBOL:automatic] synonym: "vascular elastic lamina" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "vascular elastic laminae" EXACT PLURAL [http://orcid.org/0000-0002-6601-2165] synonym: "vascular elastic tissue" EXACT [MP:0006083] xref: EMAPA:36300 xref: MA:0002856 is_a: UBERON:0003613 ! cardiovascular system elastic tissue relationship: part_of UBERON:0001981 ! blood vessel [Term] id: UBERON:0003618 name: aorta tunica media namespace: uberon def: "The middle layer of the aorta wall, containing the smooth muscle layer and elastic fibers." [MP:0009873] subset: pheno_slim synonym: "adult aorta tunica media" EXACT [OBOL:automatic] synonym: "dorsal aorta tunica media" EXACT [OBOL:automatic] synonym: "trunk of aortic tree tunica media" EXACT [OBOL:automatic] synonym: "tunica media of adult aorta" EXACT [OBOL:automatic] synonym: "tunica media of aorta" EXACT [OBOL:automatic] synonym: "tunica media of dorsal aorta" EXACT [OBOL:automatic] synonym: "tunica media of trunk of aortic tree" EXACT [OBOL:automatic] xref: EMAPA:35138 xref: FMA:74433 xref: http://www.snomedbrowser.com/Codes/Details/48467007 xref: MA:0002903 is_a: UBERON:0002522 ! tunica media intersection_of: UBERON:0002522 ! tunica media intersection_of: part_of UBERON:0000947 ! aorta relationship: contributes_to_morphology_of UBERON:0004663 ! aorta wall relationship: part_of UBERON:0004663 ! aorta wall [Term] id: UBERON:0003619 name: aorta tunica intima namespace: uberon def: "The innermost layer of the aorta, containing the endothelium and an inner elastic membrane." [MP:0009872] subset: pheno_slim synonym: "adult aorta tunica intima" EXACT [OBOL:automatic] synonym: "dorsal aorta tunica intima" EXACT [OBOL:automatic] synonym: "trunk of aortic tree tunica intima" EXACT [OBOL:automatic] synonym: "tunica intima of adult aorta" EXACT [OBOL:automatic] synonym: "tunica intima of aorta" EXACT [OBOL:automatic] synonym: "tunica intima of dorsal aorta" EXACT [OBOL:automatic] synonym: "tunica intima of trunk of aortic tree" EXACT [OBOL:automatic] xref: BTO:0005553 xref: EMAPA:35137 xref: FMA:74419 xref: http://www.snomedbrowser.com/Codes/Details/362031007 xref: MA:0002904 is_a: UBERON:0004797 ! blood vessel layer relationship: contributes_to_morphology_of UBERON:0004663 ! aorta wall relationship: part_of UBERON:0004663 ! aorta wall [Term] id: UBERON:0003643 name: respiratory system arterial blood vessel namespace: uberon def: "An arterial blood vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37565 {source="MA:th"} xref: MA:0001800 is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003509 ! arterial blood vessel [Term] id: UBERON:0003644 name: kidney arterial blood vessel namespace: uberon def: "An arterial blood vessel that is part of a kidney [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "kidney arterial system" RELATED [EMAPA:31436] xref: EMAPA:31436 xref: MA:0002578 is_a: UBERON:0003509 ! arterial blood vessel is_a: UBERON:0003517 ! kidney blood vessel [Term] id: UBERON:0003707 name: sinus of Valsalva namespace: uberon def: "one of the anatomic dilations of the ascending aorta, which occurs just above the aortic valve." [http://en.wikipedia.org/wiki/Aortic_sinus] subset: pheno_slim synonym: "aortic sinus" EXACT [MP:0010483] synonym: "Petit sinus" EXACT [MP:0010483] synonym: "Petit's sinus" EXACT [http://en.wikipedia.org/wiki/Aortic_sinus] synonym: "sinus aorta" RELATED [http://en.wikipedia.org/wiki/Aortic_sinus] synonym: "sinus aortae" RELATED [http://en.wikipedia.org/wiki/Aortic_sinus] synonym: "sinus aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Aortic_sinus] synonym: "sinus of Morgagni" RELATED [http://en.wikipedia.org/wiki/Aortic_sinus] synonym: "sinus of Otto" RELATED [http://en.wikipedia.org/wiki/Aortic_sinus] synonym: "Valsalva sinus" EXACT [MP:0010483] xref: Aortic:sinus xref: EMAPA:18625 xref: FMA:3745 xref: GAID:472 xref: http://linkedlifedata.com/resource/umls/id/C0503361 xref: http://www.snomedbrowser.com/Codes/Details/277732004 xref: MA:0003051 xref: MESH:D012850 xref: NCIT:C33557 xref: UMLS:C0503361 {source="ncithesaurus:Sinus_of_Valsava"} relationship: contributes_to_morphology_of UBERON:0010172 ! bulb of aorta relationship: part_of UBERON:0010172 {source="FMA", source="MP"} ! bulb of aorta property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/54/Gray497.png [Term] id: UBERON:0003708 name: carotid sinus namespace: uberon def: "A localized dilation of the internal carotid artery at its origin, the common carotid artery bifurcation." [http://en.wikipedia.org/wiki/Carotid_sinus] synonym: "carotid bulb" RELATED [http://en.wikipedia.org/wiki/Carotid_sinus] synonym: "sinus caroticus" RELATED LATIN [http://en.wikipedia.org/wiki/Carotid_sinus] xref: Carotid:sinus xref: EMAPA:19320 xref: FMA:50094 xref: GAID:482 xref: http://www.snomedbrowser.com/Codes/Details/281137000 xref: MESH:D002346 is_a: UBERON:0001530 ! common carotid artery plus branches property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png [Term] id: UBERON:0003709 name: circle of Willis namespace: uberon def: "A circle of arteries that supply blood to the brain. The Circle of Willis comprises the following arteries: Anterior cerebral artery (left and right); Anterior communicating artery; Internal carotid artery (left and right); Posterior cerebral artery (left and right); Posterior communicating artery (left and right).The basilar artery and middle cerebral arteries, supplying the brain, are also considered part of the circle" [http://en.wikipedia.org/wiki/Circle_of_Willis] subset: pheno_slim synonym: "arterial circle" BROAD [http://en.wikipedia.org/wiki/Circle_of_Willis] synonym: "arterial circle of Willis" EXACT [] synonym: "cerebral arterial circle" EXACT [GAID:486] synonym: "circulus arteriosus cerebri" RELATED LATIN [http://en.wikipedia.org/wiki/Circle_of_Willis] synonym: "Willis circle" RELATED [GAID:486] xref: EHDAA2:0000252 xref: EHDAA:9758 xref: EMAPA:37829 {source="MA:th"} xref: FMA:50454 xref: GAID:486 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1468 xref: http://en.wikipedia.org/wiki/Circle_of_Willis xref: http://www.snomedbrowser.com/Codes/Details/362047009 xref: MESH:D002941 xref: OpenCyc:Mx4rwSrCwJwpEbGdrcN5Y29ycA is_a: UBERON:0004573 ! systemic artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg property_value: UBPROP:0000008 "In zebrafish, the circle of vessels comprised of the basal communicating artery (BCA) and posterior communicating segments (PCS) superficially resemble but are not homologous to the human circle of Willis" xsd:string {source="http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html"} [Term] id: UBERON:0003710 name: vasa vasorum namespace: uberon def: "Nutrient blood vessels which supply the walls of large arteries or veins." [http://en.wikipedia.org/wiki/Vasa_vasorum, MESH:A07.231.836] synonym: "vas vasorum" EXACT LATIN [FMA:77433, FMA:TA] xref: FMA:77433 xref: GAID:526 xref: http://linkedlifedata.com/resource/umls/id/C0042367 xref: http://www.snomedbrowser.com/Codes/Details/7524009 xref: MESH:D014651 xref: NCIT:C33852 xref: UMLS:C0042367 {source="ncithesaurus:Vasa_Vasorum"} is_a: UBERON:0001981 ! blood vessel property_value: UBPROP:0000008 "The aorta of swine contains a vaso vasorum like humans - http://www.nal.usda.gov/awic/pubs/swine/swine.htm#art" xsd:string [Term] id: UBERON:0003711 name: brachiocephalic vein namespace: uberon def: "The left and right brachiocephalic veins in the upper chest are formed by the union of each corresponding internal jugular vein and subclavian vein. This is at the level of the sternoclavicular joint. These great vessels merge to form the superior vena cava. The brachiocephalic veins are the major veins returning blood to the superior vena cava." [http://en.wikipedia.org/wiki/Brachiocephalic_vein] synonym: "brachiocephalic venous tree" EXACT [FMA:4723] synonym: "innomiate vein" RELATED [http://en.wikipedia.org/wiki/Brachiocephalic_vein] synonym: "innominate trunk" RELATED [http://en.wikipedia.org/wiki/Brachiocephalic_vein] synonym: "innominate vein" EXACT [FMA:4723] synonym: "innominate vein" RELATED [GAID:529] synonym: "innominate vein" RELATED [http://en.wikipedia.org/wiki/Brachiocephalic_vein] synonym: "innominate veins" RELATED [http://en.wikipedia.org/wiki/Brachiocephalic_vein] synonym: "vena brachiocephalica" RELATED [http://en.wikipedia.org/wiki/Brachiocephalic_vein] synonym: "vena brachiocephalica" RELATED LATIN [http://en.wikipedia.org/wiki/Brachiocephalic_vein] synonym: "venae anonyma" RELATED LATIN [http://en.wikipedia.org/wiki/Brachiocephalic_vein] xref: Brachiocephalic:vein xref: EHDAA2:0000182 xref: EHDAA:9868 xref: FMA:4723 xref: GAID:529 xref: galen:BrachiocephalicVein xref: http://linkedlifedata.com/resource/umls/id/C0006095 xref: http://www.snomedbrowser.com/Codes/Details/181371003 xref: MESH:D016121 xref: NCIT:C32816 xref: OpenCyc:Mx4rvz3aUJwpEbGdrcN5Y29ycA xref: UMLS:C0006095 {source="ncithesaurus:Innominate_Vein"} is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0007204 ! brachiocephalic vasculature property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png [Term] id: UBERON:0003712 name: cavernous sinus namespace: uberon def: "The cavernous sinus (or lateral sellar compartment), within the human head, is a large collection of thin-walled veins creating a cavity bordered by the temporal bone of the skull and the sphenoid bone, lateral to the sella turcica." [http://en.wikipedia.org/wiki/Cavernous_sinus] synonym: "cavernous" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] synonym: "cavernous sinus syndrome" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] synonym: "cavernous sinuses" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] synonym: "cavernus sinus vein" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] synonym: "parasellar syndrome" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] synonym: "sinus cavernosus" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] xref: Cavernous:sinus xref: EMAPA:19059 xref: FMA:50772 xref: GAID:532 xref: http://linkedlifedata.com/resource/umls/id/C0007473 xref: http://www.snomedbrowser.com/Codes/Details/244402005 xref: MESH:D002426 xref: NCIT:C12690 xref: OpenCyc:Mx4rwKAVGJwpEbGdrcN5Y29ycA xref: UMLS:C0007473 {source="ncithesaurus:Cavernous_Sinus"} is_a: UBERON:0005486 ! venous dural sinus property_value: UBPROP:0000001 "An irregularly shaped venous space in the dura mater at either side of the sphenoid bone[MESH:A07.231.908.224.334]." xsd:string {source="MESH:A07.231.908.224.334"} [Term] id: UBERON:0003713 name: splenic vein namespace: uberon def: "A vein arising from the splenic trabecular vein in the hilum of the spleen that drains into the portal vein." [ncithesaurus:Splenic_Vein] synonym: "lienal vein" RELATED [http://en.wikipedia.org/wiki/Splenic_vein, MA:0002164] synonym: "vena lienalis" RELATED LATIN [http://en.wikipedia.org/wiki/Splenic_vein] synonym: "vena splenica" EXACT LATIN [FMA:14331, FMA:TA] xref: EMAPA:37226 {source="MA:th"} xref: FMA:14331 xref: GAID:541 xref: galen:SplenicVein xref: http://linkedlifedata.com/resource/umls/id/C0038001 xref: http://www.snomedbrowser.com/Codes/Details/278029005 xref: MA:0002164 xref: MESH:D013162 xref: NCIT:C33608 xref: OpenCyc:Mx4rwCt0eZwpEbGdrcN5Y29ycA xref: Splenic:vein xref: UMLS:C0038001 {source="ncithesaurus:Splenic_Vein"} is_a: UBERON:0001638 ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5b/Gray1189.png property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e4/Bilebladder.png [Term] id: UBERON:0003834 name: thoracic segment blood vessel namespace: uberon def: "A blood vessel that is part of a thorax [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of thorax" EXACT [OBOL:automatic] synonym: "thorax blood vessel" EXACT [OBOL:automatic] synonym: "upper body blood vessel" RELATED [MA:0000558] xref: EMAPA:37238 {source="MA:th"} xref: MA:0000558 is_a: UBERON:0003513 ! trunk blood vessel [Term] id: UBERON:0003835 name: abdominal segment blood vessel namespace: uberon def: "A blood vessel that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] synonym: "abdominal segment of trunk blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic] xref: EMAPA:37057 {source="MA:th"} xref: MA:0000524 is_a: UBERON:0003513 ! trunk blood vessel [Term] id: UBERON:0003847 name: thyroid artery namespace: uberon def: "A artery that supplies a thyroid gland." [OBOL:automatic] xref: AAO:0010490 xref: EHDAA2:0002029 xref: EHDAA:7372 xref: EMAPA:18622 xref: http://linkedlifedata.com/resource/umls/id/C1711424 xref: MA:0002066 xref: NCIT:C53020 xref: UMLS:C1711424 {source="ncithesaurus:Thyroid_Artery"} xref: VHOG:0001366 is_a: UBERON:0001637 ! artery property_value: UBPROP:0000001 "Part of the external carotid which supplies blood to the thyroid gland.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010490", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000002 "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010490", ontology="AAO"} [Term] id: UBERON:0003848 name: gonadal vein namespace: uberon def: "In medicine, gonadal vein refers to the blood vessel that carrying blood away from the gonad (testis, ovary) toward the heart. Females : ovarian vein Males : testicular vein [WP,unvetted]." [http://en.wikipedia.org/wiki/Gonadal_vein] synonym: "gonad vein" EXACT [OBOL:automatic] synonym: "gonada vein" EXACT [OBOL:automatic] synonym: "vein of gonad" EXACT [OBOL:automatic] synonym: "vein of gonada" EXACT [OBOL:automatic] xref: EHDAA2:0000719 xref: EHDAA:8703 xref: Gonadal:vein xref: http://www.snomedbrowser.com/Codes/Details/278192008 xref: OpenCyc:Mx4rvlWYh5wpEbGdrcN5Y29ycA xref: VHOG:0001340 is_a: UBERON:0001638 ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png [Term] id: UBERON:0003906 name: cardiac jelly namespace: uberon def: "Portion of extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [ZFA:0001318] subset: pheno_slim subset: vertebrate_core synonym: "heart cardiac jelly" EXACT [VHOG:0000936] xref: EHDAA:1271 xref: EHDAA:1279 xref: EHDAA:1922 xref: EHDAA:1930 xref: EHDAA:426 xref: EHDAA:442 xref: EHDAA:450 xref: EHDAA:458 xref: EHDAA:466 xref: EHDAA:474 xref: EHDAA:772 xref: EHDAA:780 xref: EHDAA:788 xref: EHDAA:800 xref: EHDAA:808 xref: EMAPA:32687 xref: http://linkedlifedata.com/resource/umls/id/C1516293 xref: NCIT:C34115 xref: RETIRED_EHDAA2:0000212 xref: TAO:0001318 xref: UMLS:C1516293 {source="ncithesaurus:Cardiac_Jelly"} xref: VHOG:0000936 xref: XAO:0004120 xref: ZFA:0001318 relationship: adjacent_to UBERON:0002165 ! endocardium relationship: adjacent_to UBERON:0002349 ! myocardium relationship: part_of UBERON:0000948 ! heart property_value: UBPROP:0000001 "The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001318", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0003907 name: left atrioventricular canal namespace: uberon def: "An atrioventricular canal that is in the left side of a atrioventricular region." [OBOL:automatic] synonym: "left atrio-ventricular canal" EXACT [EHDAA2:0000935] synonym: "left AVC" EXACT [] xref: EHDAA2:0000935 xref: EHDAA:5336 xref: FMA:71123 is_a: UBERON:0002087 ! atrioventricular canal intersection_of: UBERON:0002087 ! atrioventricular canal intersection_of: in_left_side_of UBERON:0011820 ! atrioventricular region relationship: in_left_side_of UBERON:0011820 ! atrioventricular region property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI property_value: UBPROP:0000012 "EHDAA2 represents lumen" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0003908 name: right atrioventricular canal namespace: uberon def: "An atrioventricular canal that is in the right side of a atrioventricular region." [OBOL:automatic] synonym: "right atrio-ventricular canal" EXACT [EHDAA2:0001719] synonym: "right AVC" EXACT [] xref: EHDAA2:0001719 xref: EHDAA:5338 xref: FMA:71122 is_a: UBERON:0002087 ! atrioventricular canal intersection_of: UBERON:0002087 ! atrioventricular canal intersection_of: in_right_side_of UBERON:0011820 ! atrioventricular region relationship: in_right_side_of UBERON:0011820 ! atrioventricular region property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI property_value: UBPROP:0000012 "EHDAA2 represents lumen" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0003909 name: sinusoid namespace: uberon def: "small blood vessel similar to a capillary but with a fenestrated endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]." [http://en.wikipedia.org/wiki/Sinusoid_(blood_vessel)] subset: vertebrate_core synonym: "endothelium of irregular blood filled space" RELATED [] synonym: "sinusoidal blood vessel" EXACT [] synonym: "sinusoidal blood vessel endothelium" EXACT [ZFA:0005261] synonym: "sinusoidal capillary" RELATED [http://www.medilexicon.com/medicaldictionary.php?t=13986] synonym: "sinusoidal endothelium" RELATED [] xref: FMA:63131 xref: http://en.wikipedia.org/wiki/Sinusoid_(blood_vessel) xref: http://www.snomedbrowser.com/Codes/Details/340163004 xref: TAO:0005261 xref: ZFA:0005261 is_a: UBERON:2005260 {source="Wikipedia", source="ZFA"} ! fenestrated capillary property_value: UBPROP:0000001 "Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass. The basal lamina and gap junctions may be discontinuous.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005261", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000007 "sinusoidal" xsd:string property_value: UBPROP:0000012 "some sources give discontinuous capillary as synonym but this may be a subtype - see FMA:63198 discontinuous sinusoid (undefined)." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0003910 name: splenic sinusoid namespace: uberon def: "wide vessels in the spleen that drain into trabecular veins[WP]." [http://en.wikipedia.org/wiki/Red_pulp#Sinusoids] synonym: "sinusoid of red pulp of spleen" RELATED [FMA:63199] synonym: "sinusoidal blood vessel of spleen" EXACT [OBOL:automatic] xref: FMA:63199 xref: http://www.snomedbrowser.com/Codes/Details/9081000 xref: Sinusoids is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0003909 ! sinusoid property_value: RO:0002175 NCBITaxon:10114 {source="http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml"} property_value: UBPROP:0000008 "Whereas man and the rat are in the 'sinusal' group, the mouse belongs in the 'nonsinusal' group. The red pulp of spleens of rat, dog, man, and many other mammals contains an elaborate plexus of sinuses; that of mouse, cat, pig and others has no true sinuses and relatively few veins leading from the meshes into collecting veins - http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml" xsd:string [Term] id: UBERON:0003911 name: choroid plexus epithelium namespace: uberon def: "The epithelial component of the choroid plexus. Consists of cuboidal epithelial cells surrounding a core of capillaries and loose connective tissue." [http://en.wikipedia.org/wiki/Choroid_plexus, UBERON:cjm] synonym: "choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus" EXACT [FMA:242811] xref: EMAPA:36608 xref: FMA:242811 xref: http://linkedlifedata.com/resource/umls/id/C1516506 xref: MA:0000824 xref: NCIT:C42079 xref: UMLS:C1516506 {source="ncithesaurus:Choroid_Plexus_Epithelium"} relationship: part_of UBERON:0001886 ! choroid plexus property_value: UBPROP:0000010 "The CP epithelial layer is continuous with the ependymal cell layer that lines the ventricles, but unlike the ependyma, the epithelial layer has tight gap junctions between the cells on the side facing the ventricle (apical surface). These gap junctions prevent the majority of substances from crossing the cell layer into the CSF; thus the CP acts as a blood-CSF barrier" xsd:string [Term] id: UBERON:0003920 name: venous blood vessel namespace: uberon def: "A blood vessel that carries blood from the capillaries toward the heart" [http://www.thefreedictionary.com/venous+blood+vessel] comment: Compare to: vein synonym: "segment of venous tree organ" EXACT [FMA:86188] synonym: "venous tree organ segment" EXACT [FMA:86188] xref: EMAPA:35932 xref: FMA:86188 xref: MA:0000066 is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0004582 ! venous system relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0003930 name: atrioventricular canal endocardium namespace: uberon def: "Endocardium that is part of the atrioventricular canal[ZFA,vetted]." [ZFA:0001616] synonym: "AV canal endocardium" EXACT [OBOL:automatic] synonym: "AVC endocardium" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "endocardium of atrioventricular canal" EXACT [OBOL:automatic] synonym: "endocardium of AV canal" EXACT [OBOL:automatic] xref: TAO:0002170 xref: XAO:0004124 xref: ZFA:0001616 is_a: UBERON:0002165 ! endocardium intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002087 ! atrioventricular canal relationship: part_of UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0003957 name: Bruch's membrane namespace: uberon def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina." [https://github.com/obophenotype/uberon/issues/14, MP:0005239] subset: pheno_slim subset: vertebrate_core synonym: "basal lamina of choroid" RELATED [FMA:58438] synonym: "Bruch membrane" EXACT [MESH:A09.371.894.223.250] synonym: "Bruch's basal membrane" EXACT [FMA:58438] synonym: "lamina basalis (choroid)" EXACT [FMA:58438] synonym: "lamina basilis" BROAD [FMA:58438] synonym: "lamina choroideae basalis" EXACT LATIN [FMA:58438, FMA:TA] synonym: "vitreous lamina" EXACT [ZFA:0005562] xref: Bruch's:membrane xref: EMAPA:37450 {source="MA:th"} xref: FMA:58438 xref: GAID:914 xref: http://www.snomedbrowser.com/Codes/Details/280652000 xref: MESH:D016570 xref: ZFA:0005562 relationship: part_of UBERON:0013399 ! blood vessel layer of choroid property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/gkoutos property_value: seeAlso https://github.com/obophenotype/uberon/issues/14 property_value: UBPROP:0000010 "Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid[WP]" xsd:string property_value: UBPROP:0000011 "Bruch's membrane is present by midterm in fetal development as an elastic sheet." xsd:string [Term] id: UBERON:0003970 name: placental labyrinth vasculature namespace: uberon def: "blood vessels of the layer of the placenta where embryonic and maternal blood vessels interdigitate" [MP:0008803] subset: pheno_slim synonym: "placental labyrinth vascular network" EXACT [] synonym: "placental vasculature" RELATED [OBOL:automatic] synonym: "vasculature of placenta labyrinth" EXACT [] is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0003983 name: conus arteriosus namespace: uberon def: "A conical pouch formed from the upper and left angle of the right ventricle in the chordate heart, from which the pulmonary artery arises[WP]. the anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminates in the pulmonary trunk[MP]." [http://en.wikipedia.org/wiki/Conus_arteriosus, MP:0009464] xref: AAO:0010250 xref: Conus:arteriosus is_a: UBERON:0004151 ! cardiac chamber relationship: part_of UBERON:0002080 ! heart right ventricle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png property_value: UBPROP:0000001 "Receives blood from the left atrium and becomes the median truncus arteriosus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010250", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000008 "Kardong says absent in adult tetrapods, check AAO" xsd:string property_value: UBPROP:0000013 "we use the term CA for the anterior chamber if it is composed of cardiac muscle, contractile, and contains conal valves internally" xsd:string {source="ISBN:0073040584"} [Term] id: UBERON:0004019 name: baroreceptor namespace: uberon def: "The sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure" [MP:0004118] comment: WP classifies as mechanoreceptor subset: pheno_slim synonym: "baroceptor" RELATED [http://en.wikipedia.org/wiki/Baroreceptor] synonym: "pressoreceptor" RELATED [http://en.wikipedia.org/wiki/Baroreceptor] synonym: "stretch receptor" RELATED [] synonym: "vascular stretch receptor" RELATED [MESH:A08.800.050.800.900.700] xref: EMAPA:36597 xref: FMA:85601 xref: http://en.wikipedia.org/wiki/Baroreceptor xref: MA:0003009 xref: MESH:D011311 relationship: located_in UBERON:0001981 ! blood vessel relationship: part_of UBERON:0007798 ! vascular system property_value: seeAlso https://github.com/obophenotype/uberon/issues/510 [Term] id: UBERON:0004029 name: canal of Schlemm namespace: uberon def: "The vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation" [http://en.wikipedia.org/wiki/Schlemm's_canal, MP:0005204] subset: pheno_slim synonym: "Schlemm's canal" EXACT [] synonym: "scleral sinus" EXACT [FMA:51873] synonym: "scleral venous sinus" EXACT [FMA:51873] synonym: "sinus venosus of sclera" EXACT [FMA:51873] synonym: "sinus venosus sclerae" EXACT LATIN [http://en.wikipedia.org/wiki/Schlemm's_canal] xref: EMAPA:37456 {source="MA:th"} xref: FMA:51873 xref: http://linkedlifedata.com/resource/umls/id/C0229108 xref: http://www.snomedbrowser.com/Codes/Details/280605006 xref: NCIT:C32256 xref: Schlemm's:canal xref: UMLS:C0229108 {source="ncithesaurus:Canal_of_Schlemm"} xref: ZFA:0005829 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0003712 ! cavernous sinus relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus [Term] id: UBERON:0004030 name: aqueous vein namespace: uberon def: "A vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm)" [MP:0005207] comment: a mixture of episcleral venous blood and aqueous humor mix in this combined channel[http://www.atlasophthalmology.com] subset: pheno_slim xref: EMAPA:37428 {source="MA:th"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: depicted:by http://www.atlasophthalmology.com/media/Aqeous+Vein+Prep.m4v [Term] id: UBERON:0004087 name: vena cava namespace: uberon def: "Any of the veins that carries deoxygenated blood from a part of the body into the right atrium of the heart." [http://en.wikipedia.org/wiki/Venae_cavae, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "caval vein" RELATED [] synonym: "venae cavae" RELATED PLURAL [http://en.wikipedia.org/wiki/Venae_cavae] xref: AAO:0010215 xref: BTO:0001438 xref: EMAPA:18415 xref: FMA:321896 xref: GAID:547 xref: http://linkedlifedata.com/resource/umls/id/C0042460 xref: http://www.snomedbrowser.com/Codes/Details/244405007 xref: MA:0000068 xref: MESH:D014684 xref: NCIT:C12817 xref: OpenCyc:Mx4rkJQ4U6gEEdudWQACs5b6Bw xref: UMLS:C0042460 {source="ncithesaurus:Vena_Cava"} xref: Venae:cavae is_a: UBERON:0003479 ! thoracic cavity vein is_a: UBERON:0013768 ! great vessel of heart property_value: depicted:by Heart:numlabels.png property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/35/Relations_of_the_aorta,_trachea,_esophagus_and_other_heart_structures.png [Term] id: UBERON:0004115 name: blood vessel of tympanic cavity namespace: uberon def: "A blood vessel that is part of a tympanic cavity [Automatically generated definition]." [OBOL:automatic] synonym: "anatomical cavity of middle ear blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "blood vessel of cavity of middle ear" EXACT [OBOL:automatic] synonym: "blood vessel of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "blood vessel of middle ear cavity" EXACT [OBOL:automatic] synonym: "cavity of middle ear blood vessel" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity blood vessel" EXACT [OBOL:automatic] synonym: "middle ear blood vessel" EXACT [] synonym: "middle ear cavity blood vessel" EXACT [OBOL:automatic] synonym: "tympanic cavity blood vessel" EXACT [] xref: EMAPA:37775 {source="MA:th"} xref: MA:0001219 is_a: UBERON:0003496 ! head blood vessel [Term] id: UBERON:0004118 name: vasculature of iris namespace: uberon def: "A vasculature that is part of a iris [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "iris blood vessels" EXACT [ZFA:0005568] synonym: "iris vascular network" EXACT [OBOL:automatic] synonym: "iris vasculature" EXACT [] synonym: "vascular network of iris" EXACT [OBOL:automatic] xref: ZFA:0005568 is_a: UBERON:0002203 ! vasculature of eye [Term] id: UBERON:0004123 name: myocardial layer namespace: uberon def: "Any of the layers of the myocardium. Example: compact layer, trabecular layer." [http://orcid.org/0000-0002-6601-2165] subset: non_informative subset: pheno_slim synonym: "layer of myocardium" EXACT [] synonym: "myocardium layer" EXACT [] xref: EMAPA:37475 {source="MA:th"} xref: MA:0000080 is_a: UBERON:0005983 ! heart layer relationship: layer_part_of UBERON:0002349 ! myocardium relationship: part_of UBERON:0002349 ! myocardium [Term] id: UBERON:0004124 name: myocardium trabecular layer namespace: uberon def: "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. In zebrafish, unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae have more strut-like character, and are more uniform without apparent regional differences[ZFA]." [ZFA:0005059] subset: efo_slim subset: vertebrate_core synonym: "heart muscle trabecula" RELATED [] synonym: "heart muscle trabeculae" RELATED PLURAL [] synonym: "myocardial trabeculae carneae" RELATED PLURAL [] synonym: "myocardial trabecular layer" EXACT [] synonym: "trabecula of heart muscle" RELATED [] synonym: "trabeculae" RELATED [TAO:0005059] synonym: "trabecular layer" EXACT [ZFA:0005059] xref: EFO:0003706 xref: MA:0002866 xref: TAO:0005059 xref: ZFA:0005059 is_a: UBERON:0004123 ! myocardial layer relationship: adjacent_to UBERON:0002165 ! endocardium property_value: UBPROP:0000001 "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the the endocardium. Unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae of the zebrafish have more strut-like character, and are more uniform without apparent regional differences Hu et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005059", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0004125 name: myocardial compact layer namespace: uberon def: "outer dense layer of the myocardium uniting the epicardium and myocardium[MP]." [MP:0004056] subset: pheno_slim synonym: "compact subepicardial layer" EXACT [MP:0004056] synonym: "compact subepicardial myocardium" RELATED [MP:0004056] synonym: "heart compact layer" EXACT [MP:0004056] synonym: "myocardial compact layer" EXACT [MP:0004056] synonym: "myocardium compact layer" EXACT [MA:0002865] synonym: "subepicardial layer" EXACT [MP:0004056] synonym: "subepicardium" EXACT [MP:0004056] synonym: "subepicardium layer" RELATED [MP:0004056] xref: MA:0002865 is_a: UBERON:0004123 ! myocardial layer relationship: contributes_to_morphology_of UBERON:0002349 ! myocardium [Term] id: UBERON:0004126 name: trabecular layer of ventricle namespace: uberon def: "A myocardium trabecular layer that is part of a cardiac ventricle." [OBOL:automatic] subset: vertebrate_core synonym: "myocardium of region of ventricle" EXACT [FMA:83511] synonym: "trabecular cardiac ventricle muscle" EXACT [GO:0003222] synonym: "ventricular trabecular myocardium" EXACT [GO:0003222] xref: FMA:83511 xref: TAO:0005060 xref: ZFA:0005060 is_a: UBERON:0004124 ! myocardium trabecular layer intersection_of: UBERON:0004124 ! myocardium trabecular layer intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0001083 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! myocardium of ventricle property_value: IAO:0000116 "TODO - check FMA" xsd:string [Term] id: UBERON:0004127 name: compact layer of ventricle namespace: uberon def: "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle." [ZFA:0005062] subset: pheno_slim synonym: "compact cardiac ventricle muscle" EXACT [] synonym: "ventricle myocardium compact zone" EXACT [MP:0010556] synonym: "ventricular compact myocardium" EXACT [] synonym: "ventricular myocardial compact layer" EXACT [MP:0010556] synonym: "ventricular myocardial compact zone" EXACT [MP:0010556] xref: EMAPA:37833 {source="MA:th"} xref: TAO:0005062 xref: ZFA:0005062 is_a: UBERON:0004125 ! myocardial compact layer intersection_of: UBERON:0004125 ! myocardial compact layer intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0001083 {source="ZFA"} ! myocardium of ventricle property_value: UBPROP:0000001 "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005062", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0004142 name: outflow tract septum namespace: uberon def: "The outflow tract septum is a partition in the outflow tract" [GO:0003148] is_a: UBERON:0002099 ! cardiac septum intersection_of: UBERON:0002099 ! cardiac septum intersection_of: part_of UBERON:0004145 ! outflow tract relationship: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0004145 name: outflow tract namespace: uberon def: "The outflow tract is the portion of the heart through which blood flows into the arteries" [GO:0003151] subset: pheno_slim synonym: "arterial (outflow) pole" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/20735616] synonym: "cardiac outflow tract" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/20735616] synonym: "heart outflow tract" EXACT [] xref: EHDAA2:0001351 xref: EHDAA:464 xref: EHDAA:798 xref: EMAPA:16346 xref: MA:0000100 xref: VHOG:0000670 xref: XAO:0004139 relationship: channels_from UBERON:0000948 ! heart relationship: channels_into UBERON:0001637 ! artery relationship: part_of UBERON:0000948 ! heart property_value: UBPROP:0000008 "Depending on the species, attached at the cardiac outflow are described the conus arteriosus, the truncus arteriosus and, or the bulbus arteriosus. At the distal limit of these outflow structures, but lying outside the pericardial cavity, is the ventral aorta[PMID:20735616]" xsd:string [Term] id: UBERON:0004146 name: His-Purkinje system namespace: uberon def: "The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles" [GO:0003164, https://github.com/geneontology/go-ontology/issues/12451] synonym: "His-Purkinji network" EXACT [] synonym: "HPS" EXACT ABBREVIATION [] is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle relationship: part_of UBERON:0002350 {source="GO"} ! conducting system of heart property_value: UBPROP:0000001 "the intraventricular conduction system from the bundle of His to the distal Purkinje fibers, which carries the impulse to the ventricles." xsd:string {source="http://medical-dictionary.thefreedictionary.com/His-Purkinje+system"} [Term] id: UBERON:0004148 name: cardiac vein namespace: uberon def: "Vein of heart that drains the myocardium" [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "cardiac vein" EXACT [FMA:12846] synonym: "coronary vein" EXACT [ZFA:0005814] synonym: "coronary vein" RELATED [http://en.wikipedia.org/wiki/Coronary_circulation] synonym: "heart vein" EXACT [OBOL:automatic] synonym: "vein of heart" EXACT [OBOL:automatic] xref: Coronary:circulation xref: EHDAA2:0004507 xref: EMAPA:37137 {source="MA:th"} xref: FMA:12846 xref: galen:CoronaryVein xref: http://linkedlifedata.com/resource/umls/id/C0226654 xref: http://linkedlifedata.com/resource/umls/id/C0226737 xref: http://www.snomedbrowser.com/Codes/Details/277726009 xref: NCIT:C12878 xref: NCIT:C12882 xref: UMLS:C0226654 {source="ncithesaurus:Cardiac_Vein"} xref: UMLS:C0226737 {source="ncithesaurus:Coronary_Vein"} xref: ZFA:0005814 is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0005194 ! thoracic vein is_a: UBERON:0013140 {source="FMA"} ! systemic vein intersection_of: UBERON:0001638 ! vein intersection_of: drains UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0000948 ! heart relationship: drains UBERON:0002349 ! myocardium [Term] id: UBERON:0004149 name: ventriculo bulbo valve namespace: uberon def: "A heart valve located between the ventricle and bulbus arteriosus." [GO:0003173] synonym: "bulboventricular valve" EXACT [ZFA:0001375] xref: TAO:0001375 xref: ZFA:0001375 is_a: UBERON:0000946 ! cardial valve [Term] id: UBERON:0004150 name: coronary sinus valve namespace: uberon def: "Vestigial cardiac valve which is continuous with the valve of the inferior vena cava[FMA]." [GO:0003178] subset: pheno_slim synonym: "thebesian valve" EXACT [] synonym: "thebesius valve" EXACT [] synonym: "valve of coronary sinus" EXACT [] xref: FMA:9242 xref: http://en.wikipedia.org/wiki/Valve_of_coronary_sinus xref: http://www.snomedbrowser.com/Codes/Details/277723001 is_a: UBERON:0000946 ! cardial valve property_value: IAO:0000116 "TODO - development" xsd:string [Term] id: UBERON:0004151 name: cardiac chamber namespace: uberon def: "A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205] comment: generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus synonym: "chamber of heart" EXACT [] synonym: "heart chamber" EXACT [] xref: FMA:7095 xref: http://www.snomedbrowser.com/Codes/Details/276456008 xref: OpenCyc:Mx4rmexpjPdAEduAAAAOpmP6tw relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0004152 name: bulbus arteriosus namespace: uberon def: "The bulbus arteriosus is an elastic heart chamber[GO]. Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches[ZFA]." [GO:0003232, http://www.ncbi.nlm.nih.gov/pubmed/15108157] subset: efo_slim synonym: "truncus" EXACT [ZFA:0000173] xref: EFO:0003505 xref: TAO:0000173 xref: ZFA:0000173 is_a: UBERON:0004151 ! cardiac chamber property_value: UBPROP:0000001 "A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000173", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "replaces conus arteriosis in cartilaginous fish" xsd:string [Term] id: UBERON:0004153 name: ventricular septum intermedium namespace: uberon def: "Endocardial cushions project into the atrial canal, and, meeting in the middle line, unite to form the septum intermedium which divides the canal into two channels, the future right and left atrioventricular orifices[Gray's via WP]." [GO:0003282, http://en.wikipedia.org/wiki/Septum_intermedium] synonym: "septum intermedium" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/361468003 xref: Septum:intermedium is_a: UBERON:0002094 ! interventricular septum relationship: develops_from UBERON:0002062 {source="Wikipedia"} ! endocardial cushion property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray467.png [Term] id: UBERON:0004154 name: atrial septum primum namespace: uberon alt_id: UBERON:0004157 def: "In the developing heart, the cavity of the primitive atrium becomes subdivided into right and left chambers by a septum, the septum primum, which grows downward into the cavity. The increasingly smaller gap below it (before it fuses with the endocardial cushion) is known as the ostium primum. The septum primum eventually fuses with the endocardial cushion, closing the ostium primum off completely. Meanwhile, perforations appear in the superior part of the septum primum, forming the ostium secundum. This will eventually form part of the fossa ovalis." [GO:0003284] synonym: "atrial septum primum" EXACT [GO:0003289] synonym: "interatrial septum primum" EXACT [EHDAA2:0001825] synonym: "septum primum" EXACT [FMA:63909] xref: EHDAA2:0001825 xref: EHDAA:1900 xref: EMAPA:17013 xref: FMA:63909 xref: http://linkedlifedata.com/resource/umls/id/C0225837 xref: http://www.snomedbrowser.com/Codes/Details/362017007 xref: NCIT:C34294 xref: Septum:primum xref: UMLS:C0225837 {source="ncithesaurus:Septum_Primum"} xref: VHOG:0000020 is_a: UBERON:0002085 ! interatrial septum property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png property_value: UBPROP:0000001 "The first of the two membranous sheets which partially separate the two atria during embryonic development. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000020", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/interatrial+septum+primum"} property_value: UBPROP:0000003 "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000020", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} property_value: UBPROP:0000012 "part_of IAS in EHDAA2" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0004155 name: atrial septum secundum namespace: uberon alt_id: UBERON:0004158 def: "." [GO:0003285, http://en.wikipedia.org/wiki/Septum_secondum] comment: The septum secundum, semilunar in shape, grows downward from the upper wall of the atrium immediately to the right of the primary septum and ostium secundum. Shortly after birth it fuses with the septum primum, and consequently the foramen ovale is closed, but sometimes the fusion is incomplete and the upper part of the foramen remains patent. The limbus fossae ovalis denotes the free margin of the septum secundum. synonym: "interatrial septum secundum" EXACT [EHDAA2:0001827] synonym: "septum secundum" EXACT [FMA:63910] xref: EHDAA2:0001827 xref: EHDAA:3406 xref: EMAPA:17864 xref: FMA:63910 xref: http://linkedlifedata.com/resource/umls/id/C0225838 xref: http://www.snomedbrowser.com/Codes/Details/308850005 xref: NCIT:C34295 xref: Septum:secondum xref: UMLS:C0225838 {source="ncithesaurus:Septum_Secundum"} xref: VHOG:0000021 is_a: UBERON:0002085 ! interatrial septum property_value: UBPROP:0000001 "The second of the two membranous sheets which partially separate the two atria during embryonic development. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000021", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/interatrial+septum+secundum"} property_value: UBPROP:0000003 "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000021", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} [Term] id: UBERON:0004159 name: atrial septum intermedium namespace: uberon def: "." [GO:0003291] is_a: UBERON:0002085 ! interatrial septum [Term] id: UBERON:0004160 name: proepicardium namespace: uberon def: "An embryonic group of progenitor cells that forms from an outpouching of the septum transversum near the venous pole of the heart and gives rise to the epicardium" [GO:0003342, http://en.wiktionary.org/wiki/proepicardium] synonym: "proepicardial cluster" EXACT [ZFA:0005808] synonym: "proepicardial organ" EXACT [ZFIN:ZDB-PUB-080218-16] xref: EMAPA:36025 xref: ZFA:0005808 relationship: part_of UBERON:0004535 {source="ZFA"} ! cardiovascular system property_value: UBPROP:0000007 "propepicardial" xsd:string property_value: UBPROP:0000008 "Proepicardial clusters in Zebrafish form on the pericardial wall, adjacent to the atrioventricular (AV) junction and near the venous pole[ZFA]" xsd:string [Term] id: UBERON:0004162 name: pulmonary myocardium namespace: uberon def: "The pulmonary myocardium is the myocardial tissue present in the pulmonary vein" [GO:0003350] relationship: part_of UBERON:0002016 ! pulmonary vein relationship: part_of UBERON:0002349 ! myocardium [Term] id: UBERON:0004178 name: aorta smooth muscle tissue namespace: uberon def: "the nonstriated, involuntary muscle tissue located in the wall of the aorta" [MGI:csmith, MP:0009865] subset: efo_slim subset: pheno_slim synonym: "aorta non-striated muscle" EXACT [OBOL:automatic] synonym: "aorta smooth muscle" EXACT [OBOL:automatic] synonym: "aortic smooth muscle" EXACT [BTO:0001685] xref: BTO:0001685 xref: CALOHA:TS-0048 xref: EFO:0002775 xref: EMAPA:35135 xref: http://linkedlifedata.com/resource/umls/id/C1706825 xref: MA:0000702 xref: NCIT:C49191 xref: UMLS:C1706825 {source="ncithesaurus:Aorta_Smooth_Muscle_Tissue"} is_a: UBERON:0004237 ! blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle relationship: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0004183 name: placental labyrinth blood vessel namespace: uberon def: "The embryonic vessels grow through the layer to come in close contact with the maternal blood supply" [GO:0060716] synonym: "blood vessel of labyrinthine layer" EXACT [OBOL:automatic] synonym: "blood vessel of labyrinthine layer of placenta" EXACT [OBOL:automatic] synonym: "blood vessel of placenta labyrinth" EXACT [OBOL:automatic] synonym: "labyrinthine layer blood vessel" EXACT [GO:0060716] synonym: "labyrinthine layer of placenta blood vessel" EXACT [OBOL:automatic] synonym: "placenta labyrinth blood vessel" EXACT [OBOL:automatic] is_a: UBERON:0022358 ! placenta blood vessel relationship: part_of UBERON:0003970 ! placental labyrinth vasculature [Term] id: UBERON:0004189 name: glomerular endothelium namespace: uberon def: "The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus" [GO:0072011] synonym: "endothelium of renal glomerulus" EXACT [OBOL:automatic] synonym: "renal glomerulus endothelium" EXACT [OBOL:automatic] xref: BTO:0004631 is_a: UBERON:0004852 ! cardiovascular system endothelium relationship: part_of UBERON:0004190 ! renal glomerulus vasculature [Term] id: UBERON:0004190 name: renal glomerulus vasculature namespace: uberon def: "The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus" [GO:0072012] synonym: "glomerulus vasculature" EXACT [OBOL:automatic] synonym: "renal glomerulus vascular network" EXACT [OBOL:automatic] synonym: "renal glomerulus vasculature" EXACT [OBOL:automatic] synonym: "vascular network of renal glomerulus" EXACT [OBOL:automatic] synonym: "vasculature of renal glomerulus" EXACT [OBOL:automatic] is_a: UBERON:0006544 ! kidney vasculature [Term] id: UBERON:0004212 name: glomerular capillary namespace: uberon def: "the small branching blood vessels in the kidney glomerulus that receives blood from the kidney afferent arterioles; these capillaries are under high pressure for filtering within the glomerulus" [MGI:csmith, MP:0011320] subset: pheno_slim subset: vertebrate_core synonym: "blood capillary of renal glomerulus" EXACT [OBOL:automatic] synonym: "capillary of renal glomerulus" EXACT [OBOL:automatic] synonym: "capillary vessel of renal glomerulus" EXACT [OBOL:automatic] synonym: "glomerular capillaries" RELATED PLURAL [] synonym: "glomerular capillary system" RELATED [MA:0002587] synonym: "renal glomerulus blood capillary" EXACT [OBOL:automatic] synonym: "renal glomerulus capillary" EXACT [OBOL:automatic] synonym: "renal glomerulus capillary vessel" EXACT [OBOL:automatic] xref: EMAPA:28245 xref: FMA:274259 xref: http://linkedlifedata.com/resource/umls/id/C0226356 xref: http://www.snomedbrowser.com/Codes/Details/362049007 xref: MA:0002587 xref: NCIT:C32684 xref: TAO:0005284 xref: UMLS:C0226356 {source="ncithesaurus:Glomerular_Capillary"} xref: ZFA:0005284 is_a: UBERON:0003527 ! kidney capillary relationship: part_of UBERON:0004190 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! renal glomerulus vasculature property_value: UBPROP:0000001 "Capillary that is part of the renal glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005284", ontology="TAO", source="ZFIN:ZDB-PUB-000824-1", source="ZFIN:curator"} [Term] id: UBERON:0004232 name: lymphatic vessel smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of a lymphatic vessel [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "involuntary muscle of lymph vessel" EXACT [OBOL:automatic] synonym: "involuntary muscle of lymphatic vessel" EXACT [OBOL:automatic] synonym: "lymph vessel involuntary muscle" EXACT [OBOL:automatic] synonym: "lymph vessel non-striated muscle" EXACT [OBOL:automatic] synonym: "lymph vessel smooth muscle" EXACT [OBOL:automatic] synonym: "lymph vessel smooth muscle tissue" EXACT [OBOL:automatic] synonym: "lymphatic vessel involuntary muscle" EXACT [OBOL:automatic] synonym: "lymphatic vessel non-striated muscle" EXACT [OBOL:automatic] synonym: "lymphatic vessel smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of lymph vessel" EXACT [OBOL:automatic] synonym: "non-striated muscle of lymphatic vessel" EXACT [OBOL:automatic] synonym: "smooth muscle of lymph vessel" EXACT [OBOL:automatic] synonym: "smooth muscle of lymphatic vessel" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lymph vessel" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lymphatic vessel" EXACT [OBOL:automatic] xref: EMAPA:36313 xref: FMA:262026 xref: http://linkedlifedata.com/resource/umls/id/C1708791 xref: MA:0000751 xref: NCIT:C49260 xref: UMLS:C1708791 {source="ncithesaurus:Lymphatic_Vessel_Smooth_Muscle_Tissue"} relationship: contributes_to_morphology_of UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0004236 name: arteriole smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of an arteriole [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:36287 xref: FMA:312251 xref: MA:0000706 is_a: UBERON:0004237 ! blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle relationship: part_of UBERON:0001980 ! arteriole [Term] id: UBERON:0004237 name: blood vessel smooth muscle namespace: uberon alt_id: UBERON:0010508 def: "smooth muscle found within, and composing the majority of the wall of blood vessels." [http://en.wikipedia.org/wiki/Vascular_smooth_muscle] subset: pheno_slim synonym: "blood vessel involuntary muscle" EXACT [OBOL:automatic] synonym: "blood vessel non-striated muscle" EXACT [OBOL:automatic] synonym: "blood vessel smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of blood vessel" EXACT [OBOL:automatic] synonym: "non-striated muscle of blood vessel" EXACT [OBOL:automatic] synonym: "smooth muscle of blood vessel" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of blood vessel" EXACT [OBOL:automatic] synonym: "vascular smooth muscle" EXACT [ZFA:0005321] synonym: "vascular smooth muscle tissue" EXACT [] xref: BTO:0001431 xref: CALOHA:TS-1107 xref: EMAPA:35177 xref: http://en.wikipedia.org/wiki/Vascular_smooth_muscle xref: http://linkedlifedata.com/resource/umls/id/C1519956 xref: MA:0000710 xref: MESH:D009131 xref: NCIT:C33853 xref: TAO:0005321 xref: UMLS:C1519956 {source="ncithesaurus:Vascular_Smooth_Muscle_Tissue"} xref: ZFA:0005321 relationship: part_of UBERON:0001981 ! blood vessel property_value: UBPROP:0000009 "Vascular smooth muscle contracts or relaxes to both change the volume of blood vessels and the local blood pressure, a mechanism that is responsible for the redistribution of the blood within the body to areas where it is needed (i.e. areas with temporarily enhanced oxygen consumption). Thus the main function of vascular smooth muscle tonus is to regulate the caliber of the blood vessels in the body. Excessive vasoconstriction leads to hypertension, while excessive vasodilation as in shock leads to hypotension." xsd:string [Term] id: UBERON:0004246 name: outflow tract smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] synonym: "involuntary muscle of outflow tract" EXACT [OBOL:automatic] synonym: "non-striated muscle of outflow tract" EXACT [OBOL:automatic] synonym: "outflow tract involuntary muscle" EXACT [OBOL:automatic] synonym: "outflow tract non-striated muscle" EXACT [OBOL:automatic] synonym: "outflow tract smooth muscle tissue" EXACT [OBOL:automatic] synonym: "smooth muscle of outflow tract" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of outflow tract" EXACT [OBOL:automatic] xref: EMAPA:37708 {source="MA:th"} xref: MA:0000492 relationship: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0004257 name: upper leg blood vessel namespace: uberon def: "A blood vessel that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of stylopod of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of thigh" EXACT [OBOL:automatic] synonym: "blood vessel of upper leg" EXACT [OBOL:automatic] synonym: "hind limb stylopod blood vessel" EXACT [OBOL:automatic] synonym: "hindlimb stylopod blood vessel" EXACT [OBOL:automatic] synonym: "thigh blood vessel" EXACT [OBOL:automatic] xref: EMAPA:37299 {source="MA:th"} xref: MA:0000681 is_a: UBERON:0003503 ! leg blood vessel [Term] id: UBERON:0004258 name: back blood vessel namespace: uberon def: "A blood vessel that is part of a back [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of back" EXACT [OBOL:automatic] xref: EMAPA:37243 {source="MA:th"} xref: MA:0000493 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0004259 name: lower arm blood vessel namespace: uberon def: "A blood vessel that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] synonym: "forelimb zeugopod blood vessel" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37295 {source="MA:th"} xref: MA:0000597 is_a: UBERON:0003507 ! arm blood vessel [Term] id: UBERON:0004260 name: upper arm blood vessel namespace: uberon def: "A blood vessel that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] synonym: "forelimb stylopod blood vessel" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37294 {source="MA:th"} xref: MA:0000603 is_a: UBERON:0003507 ! arm blood vessel [Term] id: UBERON:0004261 name: lower leg blood vessel namespace: uberon def: "A blood vessel that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] synonym: "hindlimb zeugopod blood vessel" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37300 {source="MA:th"} xref: MA:0000675 is_a: UBERON:0003503 ! leg blood vessel [Term] id: UBERON:0004265 name: outflow tract myocardium namespace: uberon def: "A myocardium that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] synonym: "cardiac muscle of outflow tract" EXACT [OBOL:automatic] synonym: "heart muscle of outflow tract" EXACT [OBOL:automatic] synonym: "heart myocardium of outflow tract" EXACT [OBOL:automatic] synonym: "muscle of heart of outflow tract" EXACT [OBOL:automatic] synonym: "myocardium of outflow tract" EXACT [OBOL:automatic] synonym: "outflow tract cardiac muscle" EXACT [OBOL:automatic] synonym: "outflow tract heart muscle" EXACT [OBOL:automatic] synonym: "outflow tract heart myocardium" EXACT [OBOL:automatic] synonym: "outflow tract muscle of heart" EXACT [OBOL:automatic] xref: EHDAA2:0001358 xref: EMAPA:35623 xref: MA:0000489 xref: VHOG:0000603 is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0004145 ! outflow tract relationship: part_of UBERON:0004145 ! outflow tract property_value: UBPROP:0000003 "(...) (theme) is how the vertebrate cardiovascular system differs from that of the presumptive evolutionary chordate ancestor. (...) At best we can tell there are two essential new ingredients: (1) vertebrates all have a continuous endothelial lining to the heart and vessels and (2) vertebrates have developed a second chamber in the heart, one designed for generating high systemic blood pressure.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000603", ontology="VHOG", source="http://bgee.unil.ch/", source="PMID:9187138 Fishman MC, Chien KR, Fashioning the vertebrate heart: earliest embryonic decisions. Development (1997)"} [Term] id: UBERON:0004271 name: outflow tract pericardium namespace: uberon def: "A pericardium that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] synonym: "pericardium of outflow tract" EXACT [OBOL:automatic] xref: EMAPA:37707 {source="MA:th"} xref: MA:0000491 is_a: UBERON:0002407 ! pericardium intersection_of: UBERON:0002407 ! pericardium intersection_of: part_of UBERON:0004145 ! outflow tract relationship: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0004274 name: lateral ventricle choroid plexus epithelium namespace: uberon def: "A choroid plexus epithelium that is part of a lateral ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of lateral ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of lateral ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of lateral ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelium of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelium of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus of lateral ventricle" EXACT [OBOL:automatic] synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] synonym: "lateral ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] xref: EHDAA2:0004450 xref: FMA:242815 xref: http://linkedlifedata.com/resource/umls/id/C1711323 xref: MA:0000962 xref: NCIT:C49248 xref: UMLS:C1711323 {source="ncithesaurus:Choroid_Plexus_Epithelium_of_the_Lateral_Ventricle"} is_a: UBERON:0003911 ! choroid plexus epithelium relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle [Term] id: UBERON:0004275 name: third ventricle choroid plexus epithelium namespace: uberon def: "A choroid plexus epithelium that is part of a third ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of third ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of third ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of third ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelium of third ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus of third ventricle" EXACT [OBOL:automatic] synonym: "epithelium of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus of third ventricle" EXACT [OBOL:automatic] synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] synonym: "third ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "third ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "third ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "third ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "third ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] xref: EMAPA:37055 {source="MA:th"} xref: FMA:242821 xref: MA:0000880 is_a: UBERON:0003911 ! choroid plexus epithelium relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle [Term] id: UBERON:0004276 name: fourth ventricle choroid plexus epithelium namespace: uberon def: "A choroid plexus epithelium that is part of a fourth ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of fourth ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of fourth ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of fourth ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelium of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelium of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus of fourth ventricle" EXACT [OBOL:automatic] synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] synonym: "fourth ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] xref: FMA:242823 xref: http://linkedlifedata.com/resource/umls/id/C1707392 xref: MA:0000984 xref: NCIT:C49230 xref: UMLS:C1707392 {source="ncithesaurus:Choroid_Plexus_Epithelium_of_the_Fourth_Ventricle"} is_a: UBERON:0003911 ! choroid plexus epithelium relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle [Term] id: UBERON:0004292 name: cardiac skeleton namespace: uberon def: "Dense connective tissue that separates the atria from the ventricles and provides physical support for the heart." [GO:0003204, http://en.wikipedia.org/wiki/Cardiac_skeleton] synonym: "anulus fibrosus dexter cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Cardiac_skeleton] synonym: "anulus fibrosus sinister cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Cardiac_skeleton] synonym: "cardiac fibrous skeleton" EXACT [EMAPA:36645] synonym: "fibrous skeleton of heart" EXACT [] synonym: "heart fibrous skeleton" EXACT [GO:0003204] synonym: "skeleton of heart" EXACT [FMA:9496] synonym: "trigona fibrosa" RELATED LATIN [http://en.wikipedia.org/wiki/Cardiac_skeleton] synonym: "trigonum fibrosum dextrum cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Cardiac_skeleton] synonym: "trigonum fibrosum sinistrum cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Cardiac_skeleton] xref: Cardiac:skeleton xref: EMAPA:36645 xref: FMA:9496 relationship: adjacent_to UBERON:0002081 ! cardiac atrium relationship: adjacent_to UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0000948 ! heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png property_value: UBPROP:0000009 "It is not a true skeleton, but it does provide structure and support for the heart, as well as isolating the atria from the ventricles. This allows the AV node and AV bundle to delay the wave of depolarisation such that the atria can contract and assist in ventricular filling before the ventricles themselves depolarise and contract (the AV bundle is the only part of the conduction system that passes from the atria to the ventricles in a normal heart). It also allows the valves (bicuspid, tricuspid, semilunar) to keep open by giving them structural support[WP]" xsd:string [Term] id: UBERON:0004294 name: glomerular capillary endothelium namespace: uberon def: "An endothelium that is part of a glomerular capillary." [OBOL:automatic] subset: pheno_slim synonym: "renal glomerulus capillary endothelium" EXACT [OBOL:automatic] xref: http://linkedlifedata.com/resource/umls/id/C0227647 xref: http://www.snomedbrowser.com/Codes/Details/243993006 xref: MA:0001658 xref: NCIT:C32522 xref: UMLS:C0227647 {source="ncithesaurus:Endothelium_of_the_Glomerular_Capillary"} is_a: UBERON:0001915 ! endothelium of capillary is_a: UBERON:0004189 ! glomerular endothelium relationship: contributes_to_morphology_of UBERON:0004212 ! glomerular capillary relationship: part_of UBERON:0004212 ! glomerular capillary [Term] id: UBERON:0004296 name: respiratory system lymphatic vessel smooth muscle namespace: uberon def: "A lymphatic vessel smooth muscle that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "smooth muscle of lymph vessel of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37582 {source="MA:th"} xref: MA:0001826 is_a: UBERON:0004232 ! lymphatic vessel smooth muscle relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel [Term] id: UBERON:0004297 name: respiratory system blood vessel smooth muscle namespace: uberon def: "A blood vessel smooth muscle that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "smooth muscle tissue of blood vessel of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37573 {source="MA:th"} xref: MA:0001806 is_a: UBERON:0004237 ! blood vessel smooth muscle relationship: part_of UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0004344 name: cardinal vein namespace: uberon def: "Any of the four veins in the developing vertebrate embryo which run along each side of the vertebral column" [MP:0004783] subset: pheno_slim synonym: "cardinal sinus" RELATED [BTO:0004385] synonym: "cardinal vein system" RELATED [EHDAA2:0000213] synonym: "Cuvierian vein" RELATED [BTO:0004385] xref: AAO:0011022 xref: BTO:0004385 xref: EHDAA2:0000213 xref: EHDAA:1310 xref: EMAPA:16354 xref: http://linkedlifedata.com/resource/umls/id/C0231085 xref: http://www.snomedbrowser.com/Codes/Details/362860004 xref: NCIT:C34116 xref: UMLS:C0231085 {source="ncithesaurus:Cardinal_Vein"} xref: VHOG:0001197 xref: XAO:0000052 is_a: UBERON:0001638 ! vein property_value: IAO:0000232 "current we conflate the cardinal vein and cardinal vein system" xsd:string property_value: UBPROP:0000003 "In primitive vertebrates, the basic early embryonic pattern is retained, and blood from anterior and posterior systemic tissues is returned in anterior and posterior cardinal veins, both pairs of veins uniting in common cardinal veins near the heart. In derived vertebrates, the cardinals appear but usually persist only in the embryo, being functionally replaced by alternative adult vessels, the precava and postcava (anterior and posterior venae cavae).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001197", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.462"} [Term] id: UBERON:0004363 name: pharyngeal arch artery namespace: uberon alt_id: UBERON:0004342 def: "One of a series of paired embryological vascular structures formed within a pharyngeal arch; in the adult, some of these vessels give rise to the great vessels[MP]" [MP:0002672] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "a. arcuum pharyngeorum" RELATED LATIN [http://en.wikipedia.org/wiki/Aortic_arches] synonym: "aortic arch" EXACT [ZFA:0005004] synonym: "aortic arch artery" RELATED [EMAPA:16684] synonym: "aortic arches" EXACT PLURAL [ZFA:0005004] synonym: "arteriae arcuum pharyngeorum" RELATED LATIN [http://en.wikipedia.org/wiki/Aortic_arches] synonym: "branchial aortic arches" EXACT PLURAL [ZFIN:ZDB-PUB-080512-6] synonym: "branchial aortic arches" RELATED PLURAL [ZFA:0005004, ZFIN:ZDB-PUB-080512-6] synonym: "branchial arch artery" EXACT [EMAPA:16684] synonym: "embryonic aortic arch artery" EXACT [EMAPA:16684, MP:0002672] synonym: "PAA" EXACT ABBREVIATION [MP:0002672] synonym: "pharyngeal arch arteries" RELATED PLURAL [] synonym: "pharyngeal arch artery" EXACT [MP:0002672] synonym: "pharyngeal arch artery" RELATED [VHOG:0000122] xref: AAO:0010414 xref: Aortic:arches xref: EFO:0003695 xref: EHDAA2:0000186 xref: EHDAA:398 xref: EHDAA:7327 xref: EMAPA:16684 xref: http://linkedlifedata.com/resource/umls/id/C0003489 xref: NCIT:C32123 xref: TAO:0005004 xref: UMLS:C0003489 {source="ncithesaurus:Aortic_Arch"} xref: VHOG:0000122 xref: XAO:0000341 xref: ZFA:0005004 is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003496 ! head blood vessel relationship: has_potential_to_develop_into UBERON:0001637 ! artery relationship: part_of UBERON:0007303 {source="ZFA"} ! pharyngeal vasculature property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/84/Gray473.png property_value: IAO:0000116 "add specific artery derivatives" xsd:string property_value: IAO:0000232 "Do not confuse with arch of aorta." xsd:string property_value: UBPROP:0000001 "Paired vessels arching from the ventral to the dorsal aorta through the pharyngeal arches. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000122", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/aortic+arches"} property_value: UBPROP:0000003 "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000122", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} property_value: UBPROP:0000008 "Number varies - Lampreys have 8, hagfishes 15; only up to 6 appear in embryonic development in most gnathostome fishes and all tetrapods" xsd:string property_value: UBPROP:0000011 "The third, fourth, and sixth arches, along with the seventh intersegmental arteries and the left dorsal aorta, are the primary contributors to the normal aortic arch and its major thoracic branches" xsd:string [Term] id: UBERON:0004365 name: vitelline blood vessel namespace: uberon def: "blood vessel that is connected to the yolk sac." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim xref: EMAPA:36494 is_a: UBERON:0001981 ! blood vessel relationship: part_of UBERON:0004374 ! vitelline vasculature [Term] id: UBERON:0004374 name: vitelline vasculature namespace: uberon def: "vascular network that is connected to the yolk sac." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "omphalomesenteric system" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "vitelline bloos vessel system" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "vitelline system" RELATED [https://orcid.org/0000-0002-6601-2165] xref: Vitelline:circulation is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0004449 name: cerebral artery namespace: uberon def: "One of three main pairs of arteries and their branches, which irrigate the cerebrum of the brain." [http://en.wikipedia.org/wiki/Cerebral_artery] subset: pheno_slim xref: AAO:0010493 xref: BTO:0005205 xref: CALOHA:TS-0126 xref: Cerebral:artery xref: EHDAA2:0000233 xref: EHDAA:5294 xref: EMAPA:18613 xref: GAID:484 xref: http://linkedlifedata.com/resource/umls/id/C0007770 xref: http://www.snomedbrowser.com/Codes/Details/181308008 xref: MA:0002562 xref: MESH:D002536 xref: NCIT:C12691 xref: UMLS:C0007770 {source="ncithesaurus:Cerebral_Artery"} xref: XAO:0000367 is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0003709 ! circle of Willis property_value: UBPROP:0000001 "Part of the internal carotid containing many branches supplying blood to the chorioid plexuses of the brain.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010493", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000002 "relationship loss: part_of internal carotid (AAO:0010219)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010493", ontology="AAO"} property_value: UBPROP:0000012 "in AAO this is part_of the internal carotid, but in humans the PCA intervenes for some cerebral arteries. Proper comparative review required" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0004450 name: gastric vein namespace: uberon def: "A laterally paired vein that drains blood away from the lesser curvature of the stomach." [ncithesaurus:Gastric_Vein, UBERON:cjm] synonym: "vena gastrica" EXACT LATIN [http://en.wikipedia.org/wiki/Gastric_vein] xref: AAO:0011046 xref: EMAPA:37146 {source="MA:th"} xref: Gastric:vein xref: http://linkedlifedata.com/resource/umls/id/C0750610 xref: http://www.snomedbrowser.com/Codes/Details/281060006 xref: MA:0002128 xref: NCIT:C32665 xref: UMLS:C0750610 {source="ncithesaurus:Gastric_Vein"} xref: XAO:0000389 is_a: UBERON:0001638 ! vein is_a: UBERON:0003513 ! trunk blood vessel [Term] id: UBERON:0004490 name: cardiac muscle tissue of atrium namespace: uberon def: "A portion of cardiac muscle tissue that is part of an atrium [Automatically generated definition]." [OBOL:automatic] synonym: "atrial cardiac muscle tissue" EXACT [GO:0055009] synonym: "atrial heart muscle" EXACT [GO:0055009] synonym: "atrial myocardium" RELATED [GO:0055009, GOC:mtg_heart] synonym: "cardiac atrium muscle" EXACT [GO:0055009] xref: FMA:7283 is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002302 ! myocardium of atrium property_value: UBPROP:0000012 "in GO, this is equivalent to the atrial myocardium, but FMA distinguishes these two. Consider merging." xsd:string {external_ontology="GO"} [Term] id: UBERON:0004491 name: cardiac muscle tissue of interatrial septum namespace: uberon def: "A portion of cardiac muscle tissue that is part of a interatrial septum [Automatically generated definition]." [OBOL:automatic] synonym: "interatrial septum cardiac muscle tissue" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "interatrial septum heart muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "interatrial septum muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "interatrial septum myocardium" EXACT [http://orcid.org/0000-0002-6601-2165] xref: FMA:84083 is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002085 ! interatrial septum relationship: part_of UBERON:0002085 ! interatrial septum [Term] id: UBERON:0004492 name: cardiac muscle tissue of cardiac septum namespace: uberon def: "A portion of cardiac muscle tissue that is part of a cardiac septum [Automatically generated definition]." [OBOL:automatic] synonym: "cardiac septum cardiac muscle tissue" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cardiac septum heart muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cardiac septum muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cardiac septum myocardium" EXACT [http://orcid.org/0000-0002-6601-2165] xref: FMA:226279 is_a: UBERON:0001133 ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002099 ! cardiac septum relationship: part_of UBERON:0002099 ! cardiac septum [Term] id: UBERON:0004493 name: cardiac muscle tissue of myocardium namespace: uberon def: "A portion of cardiac muscle tissue that is part of a myocardium [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim xref: EMAPA:32688 xref: FMA:261726 xref: MA:0002441 is_a: UBERON:0001133 ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002349 ! myocardium relationship: part_of UBERON:0002349 {source="MA"} ! myocardium property_value: IAO:0000116 "Note placement of MA class based on parthood relationship" xsd:string [Term] id: UBERON:0004494 name: cardiac muscle tissue of papillary muscle namespace: uberon def: "A portion of cardiac muscle tissue that is part of a papillary muscle [Automatically generated definition]." [OBOL:automatic] xref: FMA:84425 is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002494 ! papillary muscle of heart relationship: part_of UBERON:0002494 ! papillary muscle of heart [Term] id: UBERON:0004521 name: vasculature of muscle organ namespace: uberon def: "A vasculature that is part of a muscle organ [Automatically generated definition]." [OBOL:automatic] synonym: "muscular organ vasculature" EXACT [FMA:87123] xref: FMA:87123 is_a: UBERON:0004522 ! vasculature of musculoskeletal system is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0004522 name: vasculature of musculoskeletal system namespace: uberon def: "A vasculature that is part of a musculoskeletal system [Automatically generated definition]." [OBOL:automatic] xref: FMA:239607 is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0004523 name: papillary muscle of right ventricle namespace: uberon def: "A papillary muscle that is part of a right ventricle [Automatically generated definition]." [OBOL:automatic] xref: EHDAA2:0004544 xref: FMA:7259 xref: http://www.snomedbrowser.com/Codes/Details/244356004 is_a: UBERON:0002494 ! papillary muscle of heart intersection_of: UBERON:0002494 ! papillary muscle of heart intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0004524 name: papillary muscle of left ventricle namespace: uberon def: "A papillary muscle that is part of a left ventricle [Automatically generated definition]." [OBOL:automatic] xref: EHDAA2:0001398 xref: FMA:9352 xref: http://www.snomedbrowser.com/Codes/Details/244347007 is_a: UBERON:0002494 ! papillary muscle of heart intersection_of: UBERON:0002494 ! papillary muscle of heart intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0004525 name: cardiac muscle tissue of trabecula carnea of right ventricle namespace: uberon def: "A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]." [OBOL:automatic] xref: FMA:84429 is_a: UBERON:0003381 ! cardiac muscle of right ventricle is_a: UBERON:0003452 ! trabecula carnea cardiac muscle tissue intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0006570 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! trabecula carnea of right ventricle [Term] id: UBERON:0004526 name: cardiac muscle tissue of trabecula carnea of left ventricle namespace: uberon def: "A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]." [OBOL:automatic] xref: FMA:84430 is_a: UBERON:0003382 ! cardiac muscle of left ventricle is_a: UBERON:0003452 ! trabecula carnea cardiac muscle tissue intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0006571 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! trabecula carnea of left ventricle [Term] id: UBERON:0004535 name: cardiovascular system namespace: uberon def: "Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "CV system" RELATED [BTO:0000088] synonym: "Herz und Gefaesssystem" RELATED [BTO:0000088] xref: AAO:0011001 xref: BILA:0000016 xref: BTO:0000088 xref: CALOHA:TS-1297 xref: EFO:0000791 xref: EHDAA2:0000216 xref: EHDAA:394 xref: EMAPA:16104 xref: EMAPA:16370 xref: EV:0100017 xref: FMA:7161 xref: GAID:467 xref: http://linkedlifedata.com/resource/umls/id/C0007226 xref: http://www.snomedbrowser.com/Codes/Details/278198007 xref: MA:0000010 xref: MAT:0000016 xref: MESH:D002319 xref: MIAA:0000016 xref: NCIT:C12686 xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA xref: TAO:0000010 xref: UMLS:C0007226 {source="ncithesaurus:Cardiovascular_System"} xref: VHOG:0000302 xref: WikipediaCategory:Cardiovascular_system xref: XAO:0000100 xref: XAO:0001010 xref: ZFA:0000010 is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: has_part UBERON:0000948 ! heart intersection_of: has_part UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001009 ! circulatory system relationship: has_part UBERON:0000948 ! heart relationship: has_part UBERON:0001981 ! blood vessel relationship: part_of UBERON:0001009 ! circulatory system property_value: IAO:0000232 "we treat cardiovascular as part of circulatory system, with the latter including other kinds of circulation, including lymph." xsd:string property_value: UBPROP:0000003 "The vessels of the cardiovascular system are as varied as the diverse organs they supply. However, these variations are based on modifications of a fundamental plan of organization common to vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000302", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.451"} [Term] id: UBERON:0004536 name: lymph vasculature namespace: uberon def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105] subset: vertebrate_core synonym: "lymph vessels" RELATED PLURAL [ZFA:0005105] synonym: "lymphatic trunks and ducts" EXACT [FMA:63815] synonym: "lymphatic vasculature" EXACT [] synonym: "lymphatic vessel network" EXACT [] synonym: "lymphatic vessels set" EXACT [FMA:63815] synonym: "set of lymphatic vessels" EXACT [] synonym: "trunci et ductus lymphatici" EXACT LATIN [FMA:63815, FMA:TA] xref: FMA:63815 xref: TAO:0005105 xref: ZFA:0005105 is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: has_part UBERON:0002391 ! lymph relationship: has_part UBERON:0002391 ! lymph relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system property_value: IAO:0000116 "consider merging with parent" xsd:string property_value: UBPROP:0000001 "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005105", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0004537 name: blood vasculature namespace: uberon def: "A vascular network consisting of blood vessels." [https://orcid.org/0000-0002-6601-2165] synonym: "blood system" RELATED [] synonym: "blood vascular network" EXACT [] synonym: "blood vessel system" RELATED [] synonym: "blood vessels" RELATED [TAO:0001079] synonym: "set of blood vessels" EXACT [] xref: TAO:0001079 xref: ZFA:0001079 is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: composed_primarily_of UBERON:0001981 ! blood vessel relationship: composed_primarily_of UBERON:0001981 ! blood vessel [Term] id: UBERON:0004540 name: proper plantar digital artery namespace: uberon def: "." [http://en.wikipedia.org/wiki/Proper_plantar_digital_arteries] synonym: "arteriae digitales plantares propriae" EXACT LATIN [FMA:71564, FMA:TA] synonym: "arteriae digitales plantares propriae" RELATED LATIN [http://en.wikipedia.org/wiki/Proper_plantar_digital_arteries] synonym: "plantar digital artery proper" EXACT [] synonym: "proper plantar digital arteries" EXACT [MA:0001968] synonym: "set of plantar digital arteries proper" RELATED [FMA:71564] xref: EMAPA:37219 {source="MA:th"} xref: FMA:71564 xref: http://en.wikipedia.org/wiki/Proper_plantar_digital_arteries xref: MA:0001968 is_a: UBERON:0006138 ! plantar digital artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg property_value: UBPROP:0000012 "the MA term, even though plural, represents the singular, as it is an isa child of artery. We use the FMA set term as it is the closest match, but the semantics of set terms are unclear" xsd:string {external_ontology="MA"} [Term] id: UBERON:0004552 name: digital artery namespace: uberon def: "An artery that is part of a digit [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37076 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/181335004 xref: MA:0001941 is_a: UBERON:0001637 ! artery is_a: UBERON:0003514 ! limb blood vessel property_value: IAO:0000116 "check part_of - do we need term for digit + metacarpal/tarsal bones?" xsd:string [Term] id: UBERON:0004553 name: forelimb digital artery namespace: uberon def: "A digital artery that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] synonym: "digital artery of manus" EXACT [] synonym: "forelimb digital arteries" EXACT [MA:0001953] synonym: "wing digital artery" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: EMAPA:37210 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/265791006 xref: MA:0001953 is_a: UBERON:0003522 ! manual digit blood vessel is_a: UBERON:0004552 ! digital artery [Term] id: UBERON:0004554 name: hindlimb digital artery namespace: uberon def: "A digital artery that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] synonym: "digital artery of foot" EXACT [FMA:69713] synonym: "hindlimb digital arteries" EXACT [MA:0001964] xref: EMAPA:37214 {source="MA:th"} xref: FMA:69713 xref: MA:0001964 is_a: UBERON:0003516 ! hindlimb blood vessel is_a: UBERON:0004552 ! digital artery [Term] id: UBERON:0004561 name: proper palmar digital vein namespace: uberon comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. synonym: "common palmar digital venous tributary" EXACT [FMA:22926] synonym: "distal palmar digital vein" EXACT [http://en.wikipedia.org/wiki/Palmar_digital_veins] synonym: "proper palmal vein" EXACT [MA:0002126] synonym: "proper palmar vein" EXACT [MA:0002126] synonym: "tributary of common palmar digital vein" EXACT [FMA:22926] xref: EMAPA:37229 {source="MA:th"} xref: FMA:22926 xref: MA:0002126 is_a: UBERON:0004563 ! forelimb digital vein relationship: part_of UBERON:0001412 ! common palmar digital vein relationship: tributary_of UBERON:0001412 {source="FMA/obol"} ! common palmar digital vein [Term] id: UBERON:0004562 name: digital vein namespace: uberon def: "Any vein containing deoxygenated blood that is located in a finger or toe." [ncithesaurus:Digital_Vein] xref: EMAPA:37141 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C0447128 xref: MA:0002101 xref: NCIT:C53043 xref: UMLS:C0447128 {source="ncithesaurus:Digital_Vein"} is_a: UBERON:0001638 ! vein is_a: UBERON:0003514 ! limb blood vessel property_value: IAO:0000116 "check part_of - do we need term for digit + metacarpal/tarsal bones?" xsd:string [Term] id: UBERON:0004563 name: forelimb digital vein namespace: uberon def: "A digital vein that is part of a forelimb." [OBOL:automatic] synonym: "forelimb digital veins" EXACT [MA:0002120] synonym: "vein of finger" EXACT [] synonym: "vein of manual digit" EXACT [] synonym: "wing digital vein" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: EMAPA:37223 {source="MA:th"} xref: MA:0002120 is_a: UBERON:0003523 ! manus blood vessel is_a: UBERON:0004562 ! digital vein [Term] id: UBERON:0004564 name: hindlimb digital vein namespace: uberon def: "A digital vein that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] synonym: "hindlimb digital veins" EXACT [MA:0002133] synonym: "vein of pedal digit" EXACT [] synonym: "vein of toe" EXACT [] xref: EMAPA:37224 {source="MA:th"} xref: MA:0002133 is_a: UBERON:0003521 ! pes blood vessel is_a: UBERON:0004562 ! digital vein [Term] id: UBERON:0004571 name: systemic arterial system namespace: uberon def: "The part of the arterial system which carries oxygenated blood away from the heart to the body, and returns deoxygenated blood back to the heart." [http://en.wikipedia.org/wiki/Systemic_circulation#Arteries, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "systemic arterial circulatory system" EXACT [FMA:45623] xref: Arteries xref: FMA:45623 is_a: UBERON:0007798 {source="MA-inferred"} ! vascular system relationship: part_of UBERON:0004572 ! arterial system [Term] id: UBERON:0004572 name: arterial system namespace: uberon def: "The part of the cardiovascular system consisting of all arteries." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim xref: BTO:0004690 xref: EHDAA2:0000143 xref: EHDAA:396 xref: EMAPA:16201 xref: EMAPA:16371 xref: http://www.snomedbrowser.com/Codes/Details/362030008 xref: MA:0002719 xref: VHOG:0000273 is_a: UBERON:0007798 {source="MA"} ! vascular system relationship: has_member UBERON:0001637 ! artery property_value: UBPROP:0000003 "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000273", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2005)"} [Term] id: UBERON:0004573 name: systemic artery namespace: uberon def: "An artery of the systemic circulation, which is the part of the cardiovascular system which carries oxygenated blood away from the heart, to the body, and returns deoxygenated blood back to the heart." [http://en.wikipedia.org/wiki/Artery#Systemic_arteries, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "systemic arterial subtree" EXACT [FMA:66464] xref: EMAPA:37126 {source="MA:th"} xref: FMA:66464 xref: Systemic_arteries is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0004571 ! systemic arterial system relationship: part_of UBERON:0004571 ! systemic arterial system [Term] id: UBERON:0004581 name: systemic venous system namespace: uberon def: "The part of the venous system that drains the general body tissues[Kardong]" [http://en.wikipedia.org/wiki/Systemic_venous_system, ISBN:0073040584] synonym: "systemic venous circulatory system" EXACT [FMA:45626] xref: FMA:45626 xref: http://en.wikipedia.org/wiki/Systemic_venous_system is_a: UBERON:0002049 ! vasculature relationship: part_of UBERON:0004582 ! venous system property_value: UBPROP:0000001 "In human anatomy, the systemic venous system refers to veins that drain into the right atrium without passing through two vascular beds (i.e. they originate from a set of capillaries and do not pass through a second set of capillaries before reaching the right side of the heart). The term systemic venous system is often used to differentiate veins from veins that drain the pulmonary system (the pulmonary venous system) and veins that drain the digestive tract (the portal venous system). Large veins that are considered part of the systemic venous system are the: Superior vena cava; Inferior vena cava[WP]" xsd:string {source="http://en.wikipedia.org/wiki/Systemic_venous_system"} property_value: UBPROP:0000001 "Subdivision of cardiovascular system which has as its parts the right side of heart, the superior vena cava and the inferior vena cava[FMA]" xsd:string {ontology="FMA", source="FMA:45626"} property_value: UBPROP:0000003 "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000277", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2005)"} [Term] id: UBERON:0004582 name: venous system namespace: uberon def: "The part of the cardiovascular system consisting of all venous vessels. In vertebrates with a double circulation, this can be divided into systemic and pulmonary portions." [https://orcid.org/0000-0002-6601-2165] synonym: "vein system" EXACT [] xref: BTO:0004692 xref: EHDAA2:0002171 xref: EHDAA:486 xref: EMAPA:16240 xref: http://linkedlifedata.com/resource/umls/id/C1267406 xref: http://www.snomedbrowser.com/Codes/Details/362060003 xref: MA:0002720 xref: NCIT:C33858 xref: UMLS:C1267406 {source="ncithesaurus:Venous_System"} xref: VHOG:0000277 is_a: UBERON:0007798 {source="MA"} ! vascular system relationship: composed_primarily_of UBERON:0001638 ! vein property_value: UBPROP:0000003 "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000277", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2005)"} [Term] id: UBERON:0004638 name: blood vessel endothelium namespace: uberon def: "An endothelium that lines the blood vasculature. Other endothelia may line lymph vessels, the heart" [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: vertebrate_core xref: BTO:0000766 xref: CALOHA:TS-2155 xref: EMAPA:35176 xref: http://linkedlifedata.com/resource/umls/id/C1706972 xref: MA:0000709 xref: NCIT:C53395 xref: TAO:0005257 xref: UMLS:C1706972 {source="ncithesaurus:Blood_Vessel_Endothelium"} xref: ZFA:0005257 is_a: UBERON:0004852 ! cardiovascular system endothelium relationship: part_of UBERON:0001981 ! blood vessel [Term] id: UBERON:0004639 name: renal afferent arteriole namespace: uberon def: "the blood vessels that branch from the kidney interlobular artery, convey blood to the glomerular capillaries, and play an important role in the regulation of blood pressure as a part of the tubuloglomerular feedback mechanism" [ISBN:0-683-40008-8, MGI:csmith, MP:0011312] subset: pheno_slim subset: vertebrate_core synonym: "afferent arteriole" EXACT [MA:0002579] synonym: "afferent glomerular arteriole" EXACT [ZFA:0005307] synonym: "afferent glomerular arteriole of kidney" EXACT [FMA:77042] synonym: "arteriola glomerularis afferens" RELATED LATIN [http://en.wikipedia.org/wiki/Afferent_arterioles] synonym: "arteriola glomerularis afferens renis" EXACT LATIN [FMA:77042, FMA:TA] synonym: "kidney afferent arteriole" EXACT [MP:0011312] xref: Afferent:arterioles xref: EMAPA:28230 xref: EMAPA:28266 xref: FMA:77042 xref: http://www.snomedbrowser.com/Codes/Details/67498004 xref: MA:0002579 xref: TAO:0002139 xref: ZFA:0005307 is_a: UBERON:0001637 ! artery is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003644 ! kidney arterial blood vessel relationship: branching_part_of UBERON:0004723 ! interlobular artery relationship: part_of UBERON:0004723 ! interlobular artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png [Term] id: UBERON:0004640 name: renal efferent arteriole namespace: uberon def: "the blood vessels that convey blood from the glomerulocapillary network to the capillary bed of the proximal convoluted tubule" [ISBN:0-683-40008-8, MGI:csmith, MP:0011313] subset: pheno_slim subset: vertebrate_core synonym: "arteriola glomerularis efferens capsulae renalis" RELATED LATIN [http://en.wikipedia.org/wiki/Efferent_arteriole] synonym: "arteriola glomerularis efferens renis" EXACT LATIN [FMA:77043, FMA:TA] synonym: "efferent arteriole" EXACT [MA:0002585] synonym: "efferent glomerular arteriole" EXACT [ZFA:0005308] synonym: "efferent glomerular arteriole of kidney" EXACT [FMA:77043] synonym: "kidney efferent arteriole" EXACT [MP:0011313] xref: Efferent:arteriole xref: EMAPA:28233 xref: EMAPA:28275 xref: FMA:77043 xref: http://www.snomedbrowser.com/Codes/Details/29926005 xref: MA:0002585 xref: TAO:0002140 xref: ZFA:0005308 is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003644 ! kidney arterial blood vessel property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png [Term] id: UBERON:0004646 name: infraorbital artery namespace: uberon def: "The infraorbital artery is an artery in the head that runs in the maxilla, emerging through the infraorbital foramen, just under the orbit of the eye. [WP,unvetted]." [http://en.wikipedia.org/wiki/Infraorbital_artery] synonym: "a. infraorbitalis" RELATED LATIN [http://en.wikipedia.org/wiki/Infraorbital_artery] synonym: "infra-orbital artery" EXACT [FMA:49767] xref: EMAPA:37090 {source="MA:th"} xref: FMA:49767 xref: http://linkedlifedata.com/resource/umls/id/C0226153 xref: http://www.snomedbrowser.com/Codes/Details/148167004 xref: Infraorbital:artery xref: MA:0001977 xref: NCIT:C52940 xref: UMLS:C0226153 {source="ncithesaurus:Infraorbital_Artery"} is_a: UBERON:0001637 ! artery relationship: branching_part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray511.png [Term] id: UBERON:0004663 name: aorta wall namespace: uberon def: "An anatomical wall that is part of an aorta, enclosing the luminal space." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "aortic wall" EXACT [FMA:14156] synonym: "wall of aorta" EXACT [FMA:14156] xref: EMAPA:35139 xref: FMA:14156 xref: MA:0002901 is_a: UBERON:0035965 ! wall of blood vessel relationship: contributes_to_morphology_of UBERON:0000947 ! aorta relationship: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0004664 name: aorta tunica adventitia namespace: uberon def: "the outermost layer of the aorta wall, containing connective tissue and collagen and elastic fibers" [ISBN:0-683-40008-8, MP:0009871] subset: pheno_slim synonym: "tunica adventitia of aorta" EXACT [FMA:14283] xref: EMAPA:35136 xref: FMA:14283 xref: http://www.snomedbrowser.com/Codes/Details/24996002 xref: MA:0002902 is_a: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: part_of UBERON:0000947 ! aorta relationship: contributes_to_morphology_of UBERON:0004663 ! aorta wall relationship: part_of UBERON:0004663 ! aorta wall [Term] id: UBERON:0004666 name: interventricular septum membranous part namespace: uberon alt_id: UBERON:0004143 def: "The membranous portion of the wall between the two lower chambers of the heart" [MP:0008823] subset: pheno_slim synonym: "cardiac ventricular membranous septum" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "membranous interventricular septum" EXACT [FMA:7135] synonym: "membranous interventricular septum" RELATED [MA:0002939] synonym: "membranous part interventricular septum" EXACT [VHOG:0000927] synonym: "membranous part of interventricular septum" EXACT [FMA:7135] synonym: "membranous portion of interventricular septum" EXACT [FMA:7135] synonym: "membranous septum" BROAD [GO:0003149] synonym: "pars membranacea (septi interventricularis)" EXACT [FMA:7135] synonym: "pars membranacea septi interventricularis" EXACT LATIN [FMA:7135, FMA:TA] synonym: "ventricle membranous septum" BROAD [VT:0000018] synonym: "ventricular membranous septum" BROAD [MP:0008823] xref: EHDAA2:0004596 xref: EMAPA:18246 xref: FMA:7135 xref: http://www.snomedbrowser.com/Codes/Details/278228007 xref: MA:0002939 xref: VHOG:0000927 is_a: UBERON:0005983 ! heart layer relationship: contributes_to_morphology_of UBERON:0002094 ! interventricular septum relationship: part_of UBERON:0002094 ! interventricular septum property_value: UBPROP:0000001 "The membranous septum is the upper part of ventricular septum[GO:0003149]." xsd:string {source="GO:0003149"} [Term] id: UBERON:0004667 name: interventricular septum muscular part namespace: uberon alt_id: UBERON:0004144 def: "The muscular portion of the wall between the two lower chambers of the heart" [http://en.wikipedia.org/wiki/Interventricular_septum#Portions, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "cardiac ventricular muscular septum" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "muscular interventricular septum" EXACT [FMA:7134] synonym: "muscular interventricular septum" RELATED [MA:0002940] synonym: "muscular part interventricular septum" EXACT [] synonym: "muscular part of interventricular septum" EXACT [FMA:7134] synonym: "muscular septum" BROAD [GO:0003150] synonym: "pars muscularis (septi interventricularis)" EXACT [FMA:7134] synonym: "pars muscularis septi interventricularis" EXACT LATIN [FMA:7134, FMA:TA] synonym: "septum membranaceum" EXACT LATIN [] synonym: "ventricular muscular septum" EXACT [] xref: EHDAA2:0000885 xref: EHDAA:2607 xref: EMAPA:18247 xref: FMA:7134 xref: MA:0002940 xref: RETIRED_EHDAA2:0000888 relationship: contributes_to_morphology_of UBERON:0002094 ! interventricular septum relationship: part_of UBERON:0002094 ! interventricular septum property_value: UBPROP:0000001 "The muscular septum is the lower part of the ventricular septum[GO]" xsd:string {source="GO:0003150"} [Term] id: UBERON:0004688 name: costo-cervical trunk namespace: uberon def: "The costocervical trunk arises from the upper and back part of the subclavian artery, behind the scalenus anterior on the right side, and medial to that muscle on the left side. Passing backward, it splits into the deep cervical artery and the supreme intercostal artery (or the Highest intercostal artery), which descends behind the pleura in front of the necks of the first and second ribs, and anastomoses with the first aortic intercostal (3rd posterior intercostal artery). As it crosses the neck of the first rib it lies medial to the anterior division of the first thoracic nerve, and lateral to the first thoracic ganglion of the sympathetic trunk. In the first intercostal space, it gives off a branch which is distributed in a manner similar to the distribution of the aortic intercostals. The branch for the second intercostal space usually joins with one from the highest aortic intercostal artery. This branch is not constant, but is more commonly found on the right side; when absent, its place is supplied by an intercostal branch from the aorta. Each intercostal gives off a posterior branch which goes to the posterior vertebral muscles, and sends a small spinal branch through the corresponding intervertebral foramen to the medulla spinalis and its membranes. [WP,unvetted]." [http://en.wikipedia.org/wiki/Costocervical_trunk] synonym: "costocervical trunk" EXACT [FMA:10636] synonym: "truncus costocervicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Costocervical_trunk] synonym: "trunk of costocervical artery" EXACT [FMA:10636] xref: Costocervical:trunk xref: EMAPA:37496 {source="MA:th"} xref: FMA:10636 xref: http://www.snomedbrowser.com/Codes/Details/244225009 xref: MA:0001939 is_a: UBERON:0001637 ! artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b3/Costocervical_trunk_with_branches.png [Term] id: UBERON:0004689 name: naso-frontal vein namespace: uberon def: "The nasofrontal vein is a vein in the eye which drains to the superior ophthalmic vein." [http://en.wikipedia.org/wiki/Nasofrontal_vein] synonym: "nasofrontal vein" EXACT [FMA:51729] xref: EMAPA:37227 {source="MA:th"} xref: FMA:51729 xref: http://www.snomedbrowser.com/Codes/Details/44840002 xref: MA:0002182 xref: Nasofrontal:vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0003712 ! cavernous sinus relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus [Term] id: UBERON:0004690 name: pancreaticoduodenal vein namespace: uberon def: "A vein running parallel to the superior and inferior pancreatico-duodenal arteries that drains blood from the pancreas and duodenum into the superior mesenteric or portal veins." [ncithesaurus:Pancreatico-Duodenal_Vein] synonym: "pancreatico-duodenal vein" EXACT [MA:0002190] synonym: "pancreaticoduodenal vein" EXACT [FMA:15398] synonym: "Superior posterior pancreaticoduodenal vein" EXACT [FMA:15398] synonym: "vena pancreaticoduodenalis" EXACT [] synonym: "vena pancreaticoduodenalis superior posterior" EXACT LATIN [FMA:15398, FMA:TA] xref: EMAPA:37177 {source="MA:th"} xref: FMA:15398 xref: http://linkedlifedata.com/resource/umls/id/C0226751 xref: http://www.snomedbrowser.com/Codes/Details/76262002 xref: MA:0002190 xref: NCIT:C53060 xref: Pancreaticoduodenal:veins xref: UMLS:C0226751 {source="ncithesaurus:Pancreatico-Duodenal_Vein"} is_a: UBERON:0001214 ! pancreatic tributary of splenic vein relationship: part_of UBERON:0001138 ! superior mesenteric vein relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein [Term] id: UBERON:0004695 name: arterial system smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of an arterial system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:36503 xref: MA:0000704 relationship: part_of UBERON:0004572 ! arterial system [Term] id: UBERON:0004696 name: venous system smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of a venous system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:36613 xref: MA:0000715 is_a: UBERON:0004237 ! blood vessel smooth muscle relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0004698 name: vena cava endothelium namespace: uberon def: "An endothelium that is part of a vena cava [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37800 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C1710623 xref: MA:0000713 xref: NCIT:C49318 xref: UMLS:C1710623 {source="ncithesaurus:Vena_Cava_Endothelium"} is_a: UBERON:0001919 ! endothelium of vein relationship: part_of UBERON:0004087 ! vena cava [Term] id: UBERON:0004699 name: outflow tract endothelium namespace: uberon def: "An endothelium that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] xref: MA:0000490 xref: VHOG:0001524 is_a: UBERON:0008307 ! heart endothelium relationship: part_of UBERON:0004145 ! outflow tract property_value: UBPROP:0000003 "It is assumed that during evolution, a circulatory system composed of the heart and endothelial tubular system first formed in vertebrates, medial smooth muscle then appeared for regulation of the system, and innervation of the muscle tissue took place. This sequence of development assumed for phylogenesis is actually realized in the ontogenetic processes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001524", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1254/jjp.87.253 Shigei T, Tsuru H, Ishikawa N, Yoshioka K, Absence of endothelium in invertebrate blood vessels: significance of endothelium and sympathetic nerve/medial smooth muscle in the vertebrate vascular system. Japanese Journal of Pharmacology (2001)"} [Term] id: UBERON:0004700 name: arterial system endothelium namespace: uberon def: "An endothelium that is part of an arterial system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:35145 xref: http://linkedlifedata.com/resource/umls/id/C1706849 xref: MA:0000703 xref: NCIT:C49329 xref: UMLS:C1706849 {source="ncithesaurus:Arterial_System_Endothelium"} is_a: UBERON:0004852 ! cardiovascular system endothelium relationship: part_of UBERON:0004572 ! arterial system [Term] id: UBERON:0004701 name: venous system endothelium namespace: uberon def: "An endothelium that is part of a venous system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:35907 xref: http://linkedlifedata.com/resource/umls/id/C1710626 xref: MA:0000714 xref: NCIT:C49320 xref: UMLS:C1710626 {source="ncithesaurus:Venous_System_Endothelium"} is_a: UBERON:0004852 ! cardiovascular system endothelium relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0004702 name: respiratory system blood vessel endothelium namespace: uberon def: "A blood vessel endothelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:35732 xref: MA:0001805 is_a: UBERON:0004638 ! blood vessel endothelium relationship: part_of UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0004706 name: bulbus cordis namespace: uberon def: "a transient fetal dilation of the distal (or cranial) heart tube located where the arterial trunk joins the ventral roots of the aortic arches" [ISBN:0-683-40008-8, MP:0010568] subset: pheno_slim subset: vertebrate_core synonym: "primitive right ventricle endocardium" EXACT [EHDAA2:0000197, JB:def] xref: Bulbus:cordis xref: EHDAA2:0000197 xref: EHDAA:438 xref: EHDAA:768 xref: EMAPA:16333 xref: FMA:70300 xref: http://linkedlifedata.com/resource/umls/id/C1284055 xref: http://www.snomedbrowser.com/Codes/Details/361525002 xref: NCIT:C34114 xref: UMLS:C1284055 {source="ncithesaurus:Bulbus_Cordis"} relationship: part_of UBERON:0000948 ! heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray466.png property_value: IAO:0000116 "TODO - check relationship to bulbus arteriosus" xsd:string property_value: UBPROP:0000001 "A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000173", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0004711 name: jugular vein namespace: uberon def: "The jugular veins are veins that bring deoxygenated blood from the head back to the heart via the superior vena cava." [http://en.wikipedia.org/wiki/Jugular_vein] synonym: "jugular" RELATED [] synonym: "vena jugularis" RELATED [BTO:0001744] xref: BTO:0001744 xref: CALOHA:TS-0497 xref: EMAPA:18638 xref: GAID:536 xref: http://linkedlifedata.com/resource/umls/id/C0022427 xref: http://www.snomedbrowser.com/Codes/Details/244403000 xref: Jugular:vein xref: MA:0002154 xref: MESH:D007601 xref: NCIT:C12738 xref: UMLS:C0022427 {source="ncithesaurus:Jugular_Vein"} is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png [Term] id: UBERON:0004719 name: kidney arcuate vein namespace: uberon def: "Any of the veins that parallel the arcuate arteries, receive blood from the interlobular veins and straight venules, and terminate in the interlobar veins." [ISBN:0-683-40008-8, MP:0011325] subset: pheno_slim synonym: "arciform vein of kidney" EXACT [MP:0011325] synonym: "arcuate vein" BROAD [MA:0002593] synonym: "arcuate vein of kidney" EXACT [MP:0011325] synonym: "arcuate veins" RELATED [http://en.wikipedia.org/wiki/Arcuate_vein] synonym: "renal arcuate vein" EXACT [MP:0011325] synonym: "venae arcuatae renis" EXACT LATIN [http://en.wikipedia.org/wiki/Arcuate_vein] xref: Arcuate:vein xref: EMAPA:28221 xref: FMA:272193 xref: FMA:321527 xref: MA:0002593 is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel property_value: depicted:by Kidney:PioM.png property_value: UBPROP:0000202 FMA:71632 [Term] id: UBERON:0004722 name: deep cervical lymph node namespace: uberon def: "The deep cervical lymph nodes are a group of cervical lymph nodes found near the internal jugular vein. They can be divided into upper and lower groups, or superior and inferior groups. Alternatively, they can be divided into deep anterior cervical lymph nodes and deep lateral cervical lymph nodes. They can also be divided into three groups: superior deep jugular, middle deep jugular, and 'inferior deep jugular'." [http://en.wikipedia.org/wiki/Deep_cervical_lymph_nodes] synonym: "lower jugular nodes" RELATED [http://en.wikipedia.org/wiki/Deep_cervical_lymph_nodes] synonym: "middle jugular nodes" RELATED [http://en.wikipedia.org/wiki/Deep_cervical_lymph_nodes] synonym: "upper jugular nodes" RELATED [http://en.wikipedia.org/wiki/Deep_cervical_lymph_nodes] xref: EMAPA:37510 {source="MA:th"} xref: http://en.wikipedia.org/wiki/Deep_cervical_lymph_nodes xref: http://linkedlifedata.com/resource/umls/id/C0458298 xref: http://www.snomedbrowser.com/Codes/Details/279145002 xref: MA:0002885 xref: NCIT:C32431 xref: UMLS:C0458298 {source="ncithesaurus:Deep_Cervical_Lymph_Node"} is_a: UBERON:0015918 ! deep lymph node property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b6/Illu_lymph_chain02.jpg [Term] id: UBERON:0004723 name: interlobular artery namespace: uberon def: "The branches of the arcuate arteries of the kidney that radiate outward throught the renal columns and supply the glomeruli[MP]. The first set of renal bloodvessels, the interlobular arteries (or cortical radiate arteries, or cortical radial arteries), are given off at right angles from the side of the arcuate arteries looking toward the cortical substance, and pass directly outward between the medullary rays to reach the fibrous tunic, where they end in the capillary network of this part. These vessels do not anastomose with each other, but form what are called end-arteries. In their outward course they give off lateral branches; these are the afferent vessels for the renal corpuscles; they enter the capsule, and end in the glomerulus. From each tuft the corresponding efferent vessel arises, and, having made its egress from the capsule near to the point where the afferent vessel enters, breaks up into a number of branches, which form a dense plexus within Bowman's capsule." [http://en.wikipedia.org/wiki/Interlobular_arteries, MP:0011316] subset: pheno_slim synonym: "arteriae corticales radiatae" RELATED LATIN [http://en.wikipedia.org/wiki/Interlobular_arteries] synonym: "arteriae interlobulares renis" RELATED LATIN [http://en.wikipedia.org/wiki/Interlobular_arteries] synonym: "cortical radial arteries" RELATED [http://en.wikipedia.org/wiki/Interlobular_arteries] synonym: "interlobular" RELATED [http://en.wikipedia.org/wiki/Interlobular_arteries] synonym: "interlobular renal artery" EXACT [FMA:70498] synonym: "kidney interlobular artery" EXACT [MP:0011316] synonym: "renal interlobular artery" RELATED [FMA:70498] xref: EMAPA:28212 xref: FMA:70498 xref: http://linkedlifedata.com/resource/umls/id/C1512856 xref: http://www.snomedbrowser.com/Codes/Details/76147008 xref: Interlobular:arteries xref: MA:0002584 xref: NCIT:C32826 xref: UMLS:C1512856 {source="ncithesaurus:Interlobular_Artery"} is_a: UBERON:0003644 ! kidney arterial blood vessel disjoint_from: UBERON:0009885 {source="Renal:circulation"} ! interlobar artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png [Term] id: UBERON:0004726 name: vasa recta namespace: uberon def: "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle." [http://en.wikipedia.org/wiki/Vasa_recta] subset: pheno_slim synonym: "arteria recta" RELATED [http://en.wikipedia.org/wiki/Vasa_recta] synonym: "arteriae rectae" RELATED [http://en.wikipedia.org/wiki/Vasa_recta] synonym: "arteriolae rectae renis" EXACT LATIN [FMA:72006, FMA:TA] synonym: "arteriolae rectae renis" RELATED LATIN [http://en.wikipedia.org/wiki/Vasa_recta] synonym: "arteriolae recti" RELATED [http://en.wikipedia.org/wiki/Vasa_recta] synonym: "kidney vasa recta" EXACT [MP:0011324] synonym: "renal medullary capillary" EXACT [EMAPA:30043] synonym: "set of straight arterioles of kidney" EXACT [FMA:72006] synonym: "straight arterioles of kidney" EXACT [FMA:72006] synonym: "vasa recta of kidney" EXACT [FMA:72006] synonym: "vasa recta renis" EXACT LATIN [FMA:72006, FMA:TA] synonym: "vasa rectae" RELATED [http://en.wikipedia.org/wiki/Vasa_recta] xref: EMAPA:30043 xref: FMA:72006 xref: galen:ArteriaeRectae xref: MA:0002595 xref: Vasa:recta is_a: UBERON:0001140 ! renal vein property_value: depicted:by Kidney:nephron.png property_value: IAO:0000116 "TODO - is this a vein or set of veins? in MA it is a venous blood vessel" xsd:string [Term] id: UBERON:0004754 name: foramen ovale of heart namespace: uberon def: "An anatomical space in the fetal heart that allows blood to enter the left atrium from the right atrium." [http://en.wikipedia.org/wiki/Foramen_ovale_(heart)] comment: It is one of two fetal cardiac shunts, the other being the ductus arteriosus (which allows blood that still escapes to the right ventricle to bypass the pulmonary circulation). Another similar adaptation in the fetus is the ductus venosus[WP] synonym: "Bottalo's foramen" EXACT [FMA:86043] synonym: "falx septi" EXACT [http://en.wikipedia.org/wiki/Foramen_ovale_(heart)] synonym: "foramen ovale" NARROW [galen:ForamenOvale, MA:0001873] synonym: "foramen ovale cordis" EXACT [galen:ForamenOvaleCordis] synonym: "ostium secundum of Born" EXACT [http://en.wikipedia.org/wiki/Foramen_ovale_(heart)] xref: EHDAA2:0004142 xref: EMAPA:18244 xref: FMA:86043 xref: galen:ForamenOvaleCordis xref: http://en.wikipedia.org/wiki/Foramen_ovale_(heart) xref: http://linkedlifedata.com/resource/umls/id/C0016521 xref: http://www.snomedbrowser.com/Codes/Details/362015004 xref: MA:0001873 xref: NCIT:C34241 xref: UMLS:C0016521 {source="ncithesaurus:Oval_Foramen"} disjoint_from: UBERON:0006678 ! foramen secundum relationship: part_of UBERON:0002085 ! interatrial septum property_value: UBPROP:0000011 "In most individuals, the foramen ovale closes at birth. It later forms the fossa ovalis" xsd:string [Term] id: UBERON:0004775 name: outer renal medulla vasa recta namespace: uberon def: "A vasa recta that is part of a outer medulla of kidney [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "kidney outer medulla vasa recta" EXACT [MP:0011330] synonym: "kidney outer renal medulla vasa recta" EXACT [MP:0011330] synonym: "outer medulla of kidney vasa recta" EXACT [OBOL:automatic] synonym: "outer zone of medulla of kidney vasa recta" EXACT [OBOL:automatic] synonym: "outer zone of renal medulla vasa recta" EXACT [OBOL:automatic] synonym: "vasa recta of outer medulla of kidney" EXACT [OBOL:automatic] synonym: "vasa recta of outer renal medulla" EXACT [OBOL:automatic] synonym: "vasa recta of outer zone of medulla of kidney" EXACT [OBOL:automatic] synonym: "vasa recta of outer zone of renal medulla" EXACT [OBOL:automatic] xref: EMAPA:36560 xref: MA:0002597 is_a: UBERON:0004726 ! vasa recta is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel [Term] id: UBERON:0004776 name: inner renal medulla vasa recta namespace: uberon def: "A vasa recta that is part of a inner medulla of kidney [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "inner medulla of kidney vasa recta" EXACT [OBOL:automatic] synonym: "inner zone of medulla of kidney vasa recta" EXACT [OBOL:automatic] synonym: "inner zone of renal medulla vasa recta" EXACT [OBOL:automatic] synonym: "set of inner region of renal pyramids vasa recta" EXACT [OBOL:automatic] synonym: "vasa recta of inner medulla of kidney" EXACT [OBOL:automatic] synonym: "vasa recta of inner renal medulla" EXACT [OBOL:automatic] synonym: "vasa recta of inner zone of medulla of kidney" EXACT [OBOL:automatic] synonym: "vasa recta of inner zone of renal medulla" EXACT [OBOL:automatic] synonym: "vasa recta of set of inner region of renal pyramids" EXACT [OBOL:automatic] xref: EMAPA:36559 xref: MA:0002596 is_a: UBERON:0004726 ! vasa recta is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel [Term] id: UBERON:0004784 name: heart ventricle wall namespace: uberon def: "An anatomical wall that is part of a cardiac ventricle [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "anatomical wall of cardiac ventricle" EXACT [OBOL:automatic] synonym: "anatomical wall of heart ventricle" EXACT [OBOL:automatic] synonym: "anatomical wall of lower chamber of heart" EXACT [OBOL:automatic] synonym: "anatomical wall of ventricle of heart" EXACT [OBOL:automatic] synonym: "cardiac ventricle anatomical wall" EXACT [OBOL:automatic] synonym: "cardiac ventricle wall" EXACT [OBOL:automatic] synonym: "heart ventricle anatomical wall" EXACT [OBOL:automatic] synonym: "lower chamber of heart anatomical wall" EXACT [OBOL:automatic] synonym: "lower chamber of heart wall" EXACT [OBOL:automatic] synonym: "ventricle of heart anatomical wall" EXACT [OBOL:automatic] synonym: "ventricle of heart wall" EXACT [OBOL:automatic] synonym: "ventricular wall" EXACT [FMA:13884] synonym: "wall of cardiac ventricle" EXACT [OBOL:automatic] synonym: "wall of heart ventricle" EXACT [OBOL:automatic] synonym: "wall of lower chamber of heart" EXACT [OBOL:automatic] synonym: "wall of ventricle" RELATED [MA:0002791] synonym: "wall of ventricle of heart" EXACT [OBOL:automatic] xref: FMA:13884 xref: MA:0002791 xref: NCIT:C119295 relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0004797 name: blood vessel layer namespace: uberon def: "Any of the tissue layers that comprise a blood vessel. Examples: tunica media, tunica adventitia." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:36296 xref: MA:0002854 relationship: part_of UBERON:0035965 ! wall of blood vessel property_value: depicted:by Blood:vessels.svg [Term] id: UBERON:0004848 name: respiratory system arterial endothelium namespace: uberon def: "An endothelium of artery that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius arterial endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius artery endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of artery" EXACT [OBOL:automatic] synonym: "arterial endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "arterial endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "artery endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "artery endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of artery of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of artery of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system artery endothelium" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of artery" EXACT [OBOL:automatic] xref: EMAPA:37566 {source="MA:th"} xref: MA:0001801 is_a: UBERON:0001917 ! endothelium of artery is_a: UBERON:0004702 ! respiratory system blood vessel endothelium relationship: part_of UBERON:0003469 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system artery [Term] id: UBERON:0004849 name: respiratory system venous endothelium namespace: uberon def: "An endothelium of vein that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius endothelium of vein" EXACT [OBOL:automatic] synonym: "apparatus respiratorius vein endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius venous endothelium" EXACT [OBOL:automatic] synonym: "endothelium of vein of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of vein of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of vein" EXACT [OBOL:automatic] synonym: "respiratory system vein endothelium" EXACT [OBOL:automatic] synonym: "vein endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "vein endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "venous endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "venous endothelium of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37585 {source="MA:th"} xref: MA:0001811 is_a: UBERON:0001919 ! endothelium of vein is_a: UBERON:0004702 ! respiratory system blood vessel endothelium relationship: part_of UBERON:0003476 ! respiratory system venous blood vessel [Term] id: UBERON:0004851 name: aorta endothelium namespace: uberon def: "the thin layer of flat cells that line the aorta and form a barrier between circulating blood in the lumen and the rest of the vessel wall" [MGI:csmith, MP:0009864] subset: efo_slim subset: pheno_slim synonym: "adult aorta endothelium" EXACT [OBOL:automatic] synonym: "aortic endothelium" RELATED [BTO:0000394] synonym: "endothelium of adult aorta" EXACT [OBOL:automatic] synonym: "endothelium of aorta" EXACT [OBOL:automatic] synonym: "endothelium of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "endothelium of trunk of systemic arterial tree" EXACT [OBOL:automatic] synonym: "trunk of aortic tree endothelium" EXACT [OBOL:automatic] synonym: "trunk of systemic arterial tree endothelium" EXACT [OBOL:automatic] xref: BTO:0000394 xref: CALOHA:TS-0047 xref: EFO:0002597 xref: EMAPA:35134 xref: http://linkedlifedata.com/resource/umls/id/C1706824 xref: MA:0000701 xref: NCIT:C49190 xref: UMLS:C1706824 {source="ncithesaurus:Aorta_Endothelium"} is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004700 ! arterial system endothelium relationship: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0004852 name: cardiovascular system endothelium namespace: uberon def: "An endothelium that is part of the cardiovascular system." [https://orcid.org/0000-0002-6601-2165] subset: vertebrate_core synonym: "endothelia" RELATED PLURAL [ZFA:0001639] synonym: "vascular endothelia" RELATED PLURAL [XAO:0000356] xref: BTO:0001853 xref: EMAPA:35201 xref: GAID:519 xref: http://linkedlifedata.com/resource/umls/id/C0014261 xref: MA:0000717 xref: MESH:D004730 xref: NCIT:C13053 xref: TAO:0002171 xref: UMLS:C0014261 {source="ncithesaurus:Vascular_Endothelium"} xref: VHOG:0001217 xref: XAO:0000356 xref: ZFA:0001639 relationship: part_of UBERON:0004535 ! cardiovascular system property_value: IAO:0000116 "consider merging with 'endothelium'" xsd:string property_value: UBPROP:0000003 "Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001217", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.207"} [Term] id: UBERON:0004864 name: vasculature of retina namespace: uberon def: "A vasculature that is part of a retina [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "retina vasculature" EXACT [GO:0061298] synonym: "retina vasculature of camera-type eye" EXACT [GO:0061298] synonym: "retinal blood vessels" EXACT [FMA:76552] synonym: "retinal blood vessels set" EXACT [FMA:76552] synonym: "retinal vasculature" EXACT [OBOL:automatic] synonym: "set of blood vessels of retina" EXACT [OBOL:automatic] synonym: "set of retinal blood vessels" EXACT [FMA:76552] synonym: "vasa sanguinea retinae" EXACT LATIN [FMA:76552, FMA:TA] xref: FMA:76552 xref: MESH:D012171 xref: XAO:0004153 is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0036302 ! vasculature of central nervous system plus retina [Term] id: UBERON:0004870 name: superficial cervical lymph node namespace: uberon def: "A group of nodes lying along the external jugular vein; they drain the skin and superficial structures over the region of the sternocleidomastoid muscle and anterior cervical regions. Efferent vessels drain to the deep cervical lymph nodes. Lymph nodes can be further subdivided into anterior and lateral groupings." [CL:tm, http://en.wikipedia.org/wiki/Superficial_cervical_lymph_nodes, https://github.com/obophenotype/uberon/issues/5, ref:Stedmans] synonym: "nodi lymphoidei cervicales" RELATED LATIN [http://en.wikipedia.org/wiki/Superficial_cervical_lymph_nodes] synonym: "prescapular lymph node" RELATED [CL:tm] xref: EMAPA:37725 {source="MA:th"} xref: http://en.wikipedia.org/wiki/Superficial_cervical_lymph_nodes xref: http://linkedlifedata.com/resource/umls/id/C0458297 xref: http://www.snomedbrowser.com/Codes/Details/279144003 xref: MA:0002886 xref: NCIT:C33659 xref: UMLS:C0458297 {source="ncithesaurus:Superficial_Cervical_Lymph_Node"} is_a: UBERON:0015917 ! superficial lymph node property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4e/Illu_quiz_hn_03.jpg property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan property_value: RO:0002174 NCBITaxon:10090 {source="http://www.ncbi.nlm.nih.gov/pubmed/16624319"} [Term] id: UBERON:0004889 name: lobar bronchus vasculature namespace: uberon def: "Vasculature that is composed of the tubule structures that carry blood or lymph in the lungs" [LG:0012616] is_a: UBERON:0000102 ! lung vasculature [Term] id: UBERON:0005007 name: mucosa of major calyx namespace: uberon def: "A mucosa that is part of a major calyx [Automatically generated definition]." [OBOL:automatic] synonym: "major calix mucosa" EXACT [OBOL:automatic] synonym: "major calix mucosa of organ" EXACT [OBOL:automatic] synonym: "major calix mucous membrane" EXACT [OBOL:automatic] synonym: "major calix organ mucosa" EXACT [OBOL:automatic] synonym: "major calyx mucosa" EXACT [OBOL:automatic] synonym: "major calyx mucosa of organ" EXACT [OBOL:automatic] synonym: "major calyx mucous membrane" EXACT [OBOL:automatic] synonym: "major calyx organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of major calix" EXACT [OBOL:automatic] synonym: "mucosa of organ of major calix" EXACT [OBOL:automatic] synonym: "mucosa of organ of major calyx" EXACT [OBOL:automatic] synonym: "mucous membrane of major calix" EXACT [OBOL:automatic] synonym: "mucous membrane of major calyx" EXACT [OBOL:automatic] synonym: "organ mucosa of major calix" EXACT [OBOL:automatic] synonym: "organ mucosa of major calyx" EXACT [OBOL:automatic] xref: FMA:17934 is_a: UBERON:0004797 ! blood vessel layer relationship: part_of UBERON:0001226 ! major calyx [Term] id: UBERON:0005008 name: mucosa of minor calyx namespace: uberon def: "A mucosa that is part of a minor calyx [Automatically generated definition]." [OBOL:automatic] synonym: "minor calix mucosa" EXACT [OBOL:automatic] synonym: "minor calix mucosa of organ" EXACT [OBOL:automatic] synonym: "minor calix mucous membrane" EXACT [OBOL:automatic] synonym: "minor calix organ mucosa" EXACT [OBOL:automatic] synonym: "minor calyx mucosa" EXACT [OBOL:automatic] synonym: "minor calyx mucosa of organ" EXACT [OBOL:automatic] synonym: "minor calyx mucous membrane" EXACT [OBOL:automatic] synonym: "minor calyx organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of minor calix" EXACT [OBOL:automatic] synonym: "mucosa of organ of minor calix" EXACT [OBOL:automatic] synonym: "mucosa of organ of minor calyx" EXACT [OBOL:automatic] synonym: "mucous membrane of minor calix" EXACT [OBOL:automatic] synonym: "mucous membrane of minor calyx" EXACT [OBOL:automatic] synonym: "organ mucosa of minor calix" EXACT [OBOL:automatic] synonym: "organ mucosa of minor calyx" EXACT [OBOL:automatic] xref: FMA:17937 is_a: UBERON:0004797 ! blood vessel layer relationship: part_of UBERON:0001227 ! minor calyx [Term] id: UBERON:0005063 name: left ventricular compact myocardium namespace: uberon def: "." [GO:0003224] is_a: UBERON:0004127 ! compact layer of ventricle intersection_of: UBERON:0004127 ! compact layer of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left ventricle relationship: part_of UBERON:0006566 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! left ventricle myocardium [Term] id: UBERON:0005064 name: left ventricular trabecular myocardium namespace: uberon def: "." [GO:0003225] is_a: UBERON:0004126 ! trabecular layer of ventricle intersection_of: UBERON:0004126 ! trabecular layer of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left ventricle [Term] id: UBERON:0005065 name: right ventricular compact myocardium namespace: uberon def: "." [GO:0003226] is_a: UBERON:0004127 ! compact layer of ventricle intersection_of: UBERON:0004127 ! compact layer of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0003381 {source="GO"} ! cardiac muscle of right ventricle relationship: part_of UBERON:0006567 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! right ventricle myocardium [Term] id: UBERON:0005066 name: right ventricular trabecular myocardium namespace: uberon def: "." [GO:0003227] is_a: UBERON:0004126 ! trabecular layer of ventricle intersection_of: UBERON:0004126 ! trabecular layer of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0003381 {source="GO"} ! cardiac muscle of right ventricle [Term] id: UBERON:0005091 name: left horn of sinus venosus namespace: uberon synonym: "sinus venosus left horn" EXACT [VHOG:0000488] xref: EHDAA2:0001840 xref: EHDAA:482 xref: EMAPA:16238 xref: FMA:70321 xref: VHOG:0000488 relationship: in_left_side_of UBERON:0002063 ! sinus venosus relationship: part_of UBERON:0002063 ! sinus venosus property_value: UBPROP:0000003 "Three major adaptations, or 'novel cardiac components', that were not present in the ancestor chordate heart tube can be distinguished in the lower vertebrate heart: the atrium, ventricle, and possibly the muscular sinus venosus.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000488", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1152/physrev.00006.2003 Moorman AFM, Christoffels VM, Cardiac Chamber Formation: Development, Genes, and Evolution. Physiological Reviews (2003)"} [Term] id: UBERON:0005092 name: right horn of sinus venosus namespace: uberon synonym: "sinus venosus right horn" EXACT [VHOG:0000489] xref: EHDAA2:0001841 xref: EHDAA:484 xref: EMAPA:16239 xref: FMA:70318 xref: VHOG:0000489 relationship: in_right_side_of UBERON:0002063 ! sinus venosus relationship: part_of UBERON:0002063 ! sinus venosus property_value: UBPROP:0000003 "Three major adaptations, or 'novel cardiac components', that were not present in the ancestor chordate heart tube can be distinguished in the lower vertebrate heart: the atrium, ventricle, and possibly the muscular sinus venosus.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000489", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1152/physrev.00006.2003 Moorman AFM, Christoffels VM, Cardiac Chamber Formation: Development, Genes, and Evolution. Physiological Reviews (2003"} [Term] id: UBERON:0005119 name: metanephric glomerular mesangium namespace: uberon def: "The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]." [GO:0072223] is_a: UBERON:0002320 ! glomerular mesangium relationship: part_of UBERON:0005133 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric glomerulus vasculature [Term] id: UBERON:0005133 name: metanephric glomerulus vasculature namespace: uberon alt_id: UBERON:0005143 def: "The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]." [GO:0072239] is_a: UBERON:0004190 ! renal glomerulus vasculature [Term] id: UBERON:0005136 name: metanephric glomerular endothelium namespace: uberon def: "The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros[GO]." [GO:0072264] is_a: UBERON:0004189 ! glomerular endothelium relationship: part_of UBERON:0005133 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric glomerulus vasculature [Term] id: UBERON:0005144 name: metanephric glomerular capillary namespace: uberon def: "This process pertains to the initial formation of a structure from unspecified parts[GO]." [GO:0072277] is_a: UBERON:0004212 ! glomerular capillary [Term] id: UBERON:0005168 name: renal interlobular vein namespace: uberon def: "Any of the veins that parallel the interlobular arteries, receiving blood from the peritubular capillary plexus and empty into the arcuate veins" [ISBN:0-683-40008-8, MP:0011326] subset: pheno_slim synonym: "interlobular vein" EXACT [MA:0002594] synonym: "interlobular veins of kidney" RELATED [FMA:71634] synonym: "set of interlobular veins of kidney" RELATED [FMA:71634] synonym: "venae interlobulares renis" EXACT LATIN [FMA:71634, FMA:TA] synonym: "venae interlobulares renis" RELATED LATIN [http://en.wikipedia.org/wiki/Interlobular_veins] xref: EMAPA:28218 xref: FMA:71634 xref: Interlobular:veins xref: MA:0002594 is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel disjoint_from: UBERON:0009887 ! interlobar vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png [Term] id: UBERON:0005192 name: deferent duct artery namespace: uberon def: "An artery in males that provides blood to the vas deferens. The artery usually arises from the anterior trunk of the superior vesical artery. It accompanies the vas deferens into the testis, where it anastomoses with the testicular artery. In this way it also supplies blood to the testis and epididymis. A small branch supplies the ureter[WP]." [http://en.wikipedia.org/wiki/Artery_to_the_ductus_deferens] synonym: "arteria ductus deferentis" EXACT LATIN [http://en.wikipedia.org/wiki/Artery_to_the_ductus_deferens] synonym: "artery of ductus deferens" EXACT [FMA:18930] synonym: "ductus deferens artery" EXACT [FMA:18930] synonym: "vas deferens artery" EXACT [] xref: EMAPA:37513 {source="MA:th"} xref: FMA:18930 xref: http://en.wikipedia.org/wiki/Artery_to_the_ductus_deferens xref: http://www.snomedbrowser.com/Codes/Details/279659005 xref: MA:0001940 is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001310 {source="FMA"} ! umbilical artery relationship: branching_part_of UBERON:0001312 {source="Wikipedia"} ! superior vesical artery relationship: part_of UBERON:0001310 ! umbilical artery relationship: part_of UBERON:0001312 ! superior vesical artery [Term] id: UBERON:0005193 name: ethmoidal artery namespace: uberon def: "One of: anterior or posterior ethmoidal arteries." [http://en.wikipedia.org/wiki/Ethmoidal_arteries] subset: grouping_class synonym: "ethmoid artery" EXACT [] xref: EMAPA:37081 {source="MA:th"} xref: Ethmoidal:arteries xref: http://linkedlifedata.com/resource/umls/id/C0226184 xref: http://www.snomedbrowser.com/Codes/Details/244222007 xref: MA:0001949 xref: NCIT:C52855 xref: UMLS:C0226184 {source="ncithesaurus:Ethmoidal_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery union_of: UBERON:0012318 ! anterior ethmoidal artery union_of: UBERON:0012319 ! posterior ethmoidal artery relationship: branching_part_of UBERON:0001619 {source="FMA-abduced"} ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery [Term] id: UBERON:0005194 name: thoracic vein namespace: uberon def: "A vein that is part of a thorax [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37197 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C0226629 xref: http://www.snomedbrowser.com/Codes/Details/281472008 xref: MA:0002235 xref: NCIT:C53142 xref: UMLS:C0226629 {source="ncithesaurus:Thoracic_Vein"} is_a: UBERON:0001638 ! vein is_a: UBERON:0003834 ! thoracic segment blood vessel [Term] id: UBERON:0005195 name: deferent duct vein namespace: uberon def: "A vein that is part of a vas deferens [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37514 {source="MA:th"} xref: MA:0002100 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0005206 name: choroid plexus stroma namespace: uberon def: "Stromal matrix surrounding blood vessels within the choroid plexus." [PMCID:PMC3496674] synonym: "choroid plexus stromal matrix" EXACT [PMCID:PMC3496674] xref: EMAPA:36609 xref: MA:0000825 relationship: part_of UBERON:0001886 ! choroid plexus [Term] id: UBERON:0005208 name: right atrium valve namespace: uberon def: "A valve that is part of a right atrium [Automatically generated definition]." [OBOL:automatic] synonym: "right atrium valves" RELATED PLURAL [EHDAA2:0000302] synonym: "superior vena cava valve" RELATED [EMAPA:17327] synonym: "valve of right atrium" EXACT [EMAPA:17327] xref: EHDAA2:0000302 xref: EMAPA:17327 xref: MA:0001871 relationship: part_of UBERON:0002078 ! right cardiac atrium [Term] id: UBERON:0005243 name: interventricular septum endocardium namespace: uberon def: "An endocardium that is part of a interventricular septum [Automatically generated definition]." [OBOL:automatic] synonym: "endocardium of interventricular septum" EXACT [FMA:83584] synonym: "interventricular septum endocardial tissue" RELATED [VHOG:0000615] xref: EHDAA2:0000886 xref: EHDAA2:0000887 xref: FMA:83584 xref: VHOG:0000615 is_a: UBERON:0002165 ! endocardium intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002094 ! interventricular septum relationship: part_of UBERON:0002094 ! interventricular septum property_value: IAO:0000116 "TODO - split?" xsd:string [Term] id: UBERON:0005248 name: bulbus cordis myocardium namespace: uberon def: "A myocardium that is part of a bulbus cordis [Automatically generated definition]." [OBOL:automatic] synonym: "bulbus cordis cardiac muscle" RELATED [VHOG:0000609] xref: EMAPA:36488 xref: VHOG:0000609 is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0004706 ! bulbus cordis relationship: part_of UBERON:0004706 ! bulbus cordis [Term] id: UBERON:0005261 name: atrium cardiac jelly namespace: uberon def: "A cardiac jelly that is part of an atrium [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:16343 xref: EMAPA:16814 xref: EMAPA:16821 xref: VHOG:0000941 is_a: UBERON:0003906 ! cardiac jelly intersection_of: UBERON:0003906 ! cardiac jelly intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium property_value: UBPROP:0000001 "Cardiac jelly that is part of the atrium. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000941", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005262 name: ventricle cardiac jelly namespace: uberon def: "A cardiac jelly that is part of a ventricle [Automatically generated definition]." [OBOL:automatic] xref: VHOG:0000943 is_a: UBERON:0003906 ! cardiac jelly intersection_of: UBERON:0003906 ! cardiac jelly intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002082 ! cardiac ventricle property_value: UBPROP:0000001 "Cardiac jelly that is part of the ventricle. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000943", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005263 name: outflow tract cardiac jelly namespace: uberon def: "A cardiac jelly that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] xref: EHDAA2:0001354 xref: EMAPA:16347 xref: VHOG:0000940 is_a: UBERON:0003906 ! cardiac jelly intersection_of: UBERON:0003906 ! cardiac jelly intersection_of: part_of UBERON:0004145 ! outflow tract relationship: part_of UBERON:0004145 ! outflow tract property_value: UBPROP:0000001 "Cardiac jelly that is part of the outflow tract. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000940", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005268 name: renal cortex artery namespace: uberon def: "An artery that supplies the renal cortex." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "kidney cortex artery" EXACT [MP:0011314] synonym: "renal cortex arterial system" RELATED [MA:0002582] synonym: "renal cortex artery" EXACT [MA:0002582] xref: EMAPA:28147 xref: MA:0002582 is_a: UBERON:0001637 ! artery is_a: UBERON:0003644 ! kidney arterial blood vessel [Term] id: UBERON:0005269 name: renal cortex vein namespace: uberon def: "Artery that receives blood from the renal cortex[MP, modified]" [MGI:csmith] subset: pheno_slim synonym: "kidney cortex vein" RELATED [MP:0011322] synonym: "renal cortex venous system" RELATED [MA:0002592] xref: EMAPA:28152 xref: MA:0002592 is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel [Term] id: UBERON:0005272 name: peritubular capillary namespace: uberon def: "the tiny blood vessels that receive blood from the efferent arterioles of the glomerulus, and interact with superficial cortical nephrons allowing reabsorption and secretion between blood and the inner lumen of the nephron; peritubular capillaries are situated around the tubule and are at low pressure" [MGI:csmith, MP:0011321] subset: pheno_slim xref: EMAPA:36558 xref: MA:0002588 xref: Peritubular:capillaries is_a: UBERON:0003527 ! kidney capillary [Term] id: UBERON:0005316 name: endocardial endothelium namespace: uberon def: "The endothelial lining of the endocardium." [UBERON:cjm] synonym: "endocardium endothelium" EXACT [FMA:83596] synonym: "endothelium of endocardium" EXACT [FMA:83596] xref: FMA:83596 is_a: UBERON:0008307 ! heart endothelium relationship: part_of UBERON:0002165 ! endocardium [Term] id: UBERON:0005317 name: pulmonary artery endothelium namespace: uberon def: "An pulmonary artery endothelium is an epithelium that lines the pulmonary artery[GO]." [GO:0061155] synonym: "pulmonary artery endothelial tube" EXACT [GO:0061155] xref: BTO:0000137 is_a: UBERON:0001917 ! endothelium of artery relationship: part_of UBERON:0002012 ! pulmonary artery [Term] id: UBERON:0005326 name: mesonephric glomerulus vasculature namespace: uberon def: "The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]." [GO:0061231] is_a: UBERON:0004190 ! renal glomerulus vasculature [Term] id: UBERON:0005336 name: capillary layer of choroid namespace: uberon def: "The capillary lamina of choroid or choriocapillaris is a layer of capillaries that is immediately adjacent to Bruch's membrane in the choroid." [http://en.wikipedia.org/wiki/Capillary_lamina_of_choroid] synonym: "capillary lamina of choroid" EXACT [FMA:58437] synonym: "capillary lamina of choroid or choriocapillaris" RELATED [] synonym: "capillary layer of choroid" EXACT [FMA:58437] synonym: "choriocapillaris" RELATED [http://en.wikipedia.org/wiki/Capillary_lamina_of_choroid] synonym: "inner layer of choroid proper" EXACT [FMA:58437] synonym: "lamina choriocapillaris" RELATED [] synonym: "lamina choroidocapillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Capillary_lamina_of_choroid] xref: FMA:58437 xref: http://en.wikipedia.org/wiki/Capillary_lamina_of_choroid xref: http://www.snomedbrowser.com/Codes/Details/280899009 relationship: composed_primarily_of UBERON:0001982 ! capillary relationship: part_of UBERON:0013399 ! blood vessel layer of choroid [Term] id: UBERON:0005337 name: outflow tract of ventricle namespace: uberon def: "A ventricular outflow tract is a portion of either the left ventricle or right ventricle of the heart through which blood passes in order to enter the great arteries. The right ventricular outflow tract (RVOT) is an infundibular extension of the ventricular cavity which connects to the pulmonary artery. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]." [http://en.wikipedia.org/wiki/Ventricular_outflow_tract] synonym: "heart ventricle outflow tract" EXACT [MP:0010224] synonym: "outflow part of ventricle" EXACT [] synonym: "ventricular outflow tract" EXACT [http://en.wikipedia.org/wiki/Ventricular_outflow_tract] xref: FMA:13225 xref: http://en.wikipedia.org/wiki/Ventricular_outflow_tract xref: XAO:0004140 is_a: UBERON:0004145 ! outflow tract intersection_of: UBERON:0004145 ! outflow tract intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0005338 name: outflow tract aortic component namespace: uberon def: "An outflow tract that is part of a aorta." [OBOL:automatic] xref: EHDAA2:0001353 xref: EMAPA:17329 xref: MA:0000101 xref: VHOG:0001394 is_a: UBERON:0004145 ! outflow tract intersection_of: UBERON:0004145 ! outflow tract intersection_of: part_of UBERON:0000947 ! aorta relationship: part_of UBERON:0000947 ! aorta property_value: IAO:0000116 "merge with LVOT?" xsd:string [Term] id: UBERON:0005339 name: outflow tract pulmonary component namespace: uberon xref: EHDAA2:0001359 xref: EHDAA:4401 xref: EMAPA:17330 xref: MA:0000102 xref: VHOG:0001395 is_a: UBERON:0004145 ! outflow tract property_value: IAO:0000116 "merge with RVOT?" xsd:string [Term] id: UBERON:0005396 name: carotid artery segment namespace: uberon def: "One of: the common carotid artery, or its branches, the external and internal carotid arteries." [http://en.wikipedia.org/wiki/Carotid_artery, https://sourceforge.net/tracker/?func=detail&aid=3486870&group_id=76834&atid=994764] subset: efo_slim subset: grouping_class subset: pheno_slim subset: vertebrate_core synonym: "carotid" EXACT [AAO:0010217] synonym: "carotid artery" EXACT [MA:0001925] synonym: "common carotid arterial subdivision" RELATED [FMA:70504] synonym: "subdivision of common carotid artery" EXACT [FMA:70504] xref: AAO:0010217 xref: BTO:0000168 xref: CALOHA:TS-0116 xref: Carotid:artery xref: EFO:0000818 xref: EHDAA:6385 xref: EMAPA:18609 xref: EV:0100379 xref: FMA:70504 xref: GAID:478 xref: galen:CarotidArtery xref: http://linkedlifedata.com/resource/umls/id/C0007272 xref: http://www.snomedbrowser.com/Codes/Details/362040006 xref: http://www.snomedbrowser.com/Codes/Details/69105007 xref: MA:0001925 xref: MAT:0000501 xref: MESH:D002339 xref: NCIT:C12687 xref: OpenCyc:Mx4rvg7rcJwpEbGdrcN5Y29ycA xref: TAO:0000097 xref: UMLS:C0007272 {source="ncithesaurus:Carotid_Artery"} xref: VHOG:0000266 xref: ZFA:0000097 is_a: UBERON:0004573 {source="FMA"} ! systemic artery property_value: IAO:0000116 "This is a generic grouping class that is the superclass of the trunks/branches of the common carotid artery. Note that AOs vary widely in how they divide up and generalize arteries" xsd:string property_value: UBPROP:0000001 "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000097", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0005431 name: anterior spinal artery namespace: uberon def: "A blood vessel that supplies the anterior portion of the spinal cord. It arises from branches of the vertebral arteries and is supplied by the anterior segmental medullary arteries, including the artery of Adamkiewicz, and courses along the anterior aspect of the spinal cord." [http://en.wikipedia.org/wiki/Anterior_spinal_artery] synonym: "anterior medial spinal artery" EXACT [FMA:50531] synonym: "anterior spinal arteries" RELATED [http://en.wikipedia.org/wiki/Anterior_spinal_artery] synonym: "arteria spinalis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_spinal_artery] synonym: "arteria spinalis anterior" RELATED [http://en.wikipedia.org/wiki/Anterior_spinal_artery] synonym: "ventral artery of the spinal cord" RELATED [http://en.wikipedia.org/wiki/Anterior_spinal_artery] synonym: "ventral spinal artery" EXACT [FMA:50531] xref: EHDAA2:0000131 xref: EHDAA:6382 xref: EMAPA:18242 xref: FMA:50531 xref: http://en.wikipedia.org/wiki/Anterior_spinal_artery xref: http://linkedlifedata.com/resource/umls/id/C0149603 xref: http://www.snomedbrowser.com/Codes/Details/181329004 xref: NCIT:C12833 xref: UMLS:C0149603 {source="ncithesaurus:Anterior_Spinal_Artery"} is_a: UBERON:0002458 ! spinal artery is_a: UBERON:0035307 ! branch of vertebral artery disjoint_from: UBERON:0007146 {source="lexical"} ! posterior spinal artery relationship: develops_from UBERON:0005599 {source="EHDAA2"} ! common dorsal aorta property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/73/Anterior_spinal_cord_-_very_low_mag.jpg [Term] id: UBERON:0005432 name: aortic sac namespace: uberon def: "The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates" [MP:0012510] subset: pheno_slim synonym: "saccus aorticus" EXACT LATIN [] xref: EHDAA2:0004145 xref: EHDAA:9826 xref: EMAPA:36461 xref: FMA:71008 xref: http://www.snomedbrowser.com/Codes/Details/361527005 xref: RETIRED_EHDAA2:0000133 is_a: UBERON:0001637 {source="EHDAA2"} ! artery is_a: UBERON:0003498 ! heart blood vessel relationship: develops_from UBERON:0004363 {source="EHDAA2"} ! pharyngeal arch artery relationship: part_of UBERON:0004145 ! outflow tract property_value: UBPROP:0000001 "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD][http://medical-dictionary.thefreedictionary.com/aortic+sac]." xsd:string {source="http://medical-dictionary.thefreedictionary.com/aortic+sac"} [Term] id: UBERON:0005435 name: upper part of cisterna chyli namespace: uberon def: "A dilated sac at the lower end of the thoracic duct into which lymph from the intestinal trunk and two lumbar lymphatic trunks flow." [http://en.wikipedia.org/wiki/Cisterna_chyli] synonym: "atypical confluence of lymph trunks" EXACT [FMA:5835] synonym: "chyle cistern" EXACT [FMA:5835] synonym: "chyle cistern" RELATED [http://en.wikipedia.org/wiki/Cisterna_chyli] synonym: "cistern of Pecquet" EXACT [FMA:5835] synonym: "cisterna chyli" EXACT [FMA:5835] synonym: "cysterna chyli" RELATED LATIN [http://en.wikipedia.org/wiki/Cisterna_chyli] synonym: "receptaculum chyli" RELATED LATIN [http://en.wikipedia.org/wiki/Cisterna_chyli] xref: Cisterna:chyli xref: EHDAA2:0000253 xref: EHDAA:8679 xref: FMA:5835 xref: http://linkedlifedata.com/resource/umls/id/C0008840 xref: http://www.snomedbrowser.com/Codes/Details/279088007 xref: NCIT:C34126 xref: UMLS:C0008840 {source="ncithesaurus:Chyle_Cistern"} relationship: develops_from UBERON:0036260 ! embryonic cisterna chyli relationship: part_of UBERON:0001631 ! thoracic duct property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/75/Gray599.png property_value: UBPROP:0000008 "In dogs, it is located to the left and often ventral to the aorta; in cats it is left and dorsal; in guinea pigs it runs to the left and drains into the left innominate vein" xsd:string [Term] id: UBERON:0005436 name: common hepatic artery namespace: uberon def: "In anatomy, the common hepatic artery is a short blood vessel that supplies oxygenated blood to the liver, pylorus (a part of the stomach), duodenum (a part of the small intestine) and pancreas. It arises from the celiac artery and has the following branches:" [http://en.wikipedia.org/wiki/Common_hepatic_artery] synonym: "arteria hepatica communis" RELATED LATIN [http://en.wikipedia.org/wiki/Common_hepatic_artery] synonym: "common hepatic" RELATED [http://en.wikipedia.org/wiki/Common_hepatic_artery] xref: EHDAA2:0000308 xref: EHDAA:8570 xref: EMAPA:37206 {source="MA:th"} xref: FMA:14771 xref: galen:CommonHepaticArtery xref: http://en.wikipedia.org/wiki/Common_hepatic_artery xref: http://www.snomedbrowser.com/Codes/Details/244263001 xref: MA:0003094 is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001640 ! celiac artery relationship: part_of UBERON:0001640 ! celiac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png [Term] id: UBERON:0005438 name: coronary sinus namespace: uberon def: "the short trunk that recieves most of the cardiac veins carrying the blood from the myocardium and delivers it to the right atrium, with the sinoatrial connection occurring between the inferior vena cava and the atrioventricular orifice" [ISBN:0-683-40008-8, MP:0010436] subset: pheno_slim synonym: "sinus coronarius" EXACT [] synonym: "sinus coronarius" RELATED LATIN [http://en.wikipedia.org/wiki/Coronary_sinus] xref: Coronary:sinus xref: EHDAA2:0000320 xref: EHDAA:9884 xref: EMAPA:37836 {source="MA:th"} xref: FMA:4706 xref: http://linkedlifedata.com/resource/umls/id/C0456944 xref: http://www.snomedbrowser.com/Codes/Details/244386006 xref: NCIT:C32378 xref: UMLS:C0456944 {source="ncithesaurus:Coronary_Sinus"} is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0003920 ! venous blood vessel relationship: part_of UBERON:0004581 ! systemic venous system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray491.png property_value: UBPROP:0000010 "The sinus, before entering the auricle, is considerably dilated - nearly to the size of the end of the little finger. Its wall is partly muscular, and at its junction with the great coronary vein is somewhat constricted and furnished with a valve consisting of two unequal segments" xsd:string {source="WP"} [Term] id: UBERON:0005440 name: ductus arteriosus namespace: uberon def: "A fetal blood vessel connecting the pulmonary artery with the descending aorta[MESH]. In the developing fetus, the ductus arteriosus is a shunt connecting the pulmonary artery to the aortic arch. It allows most of the blood from the right ventricle to bypass the fetus' fluid-filled lungs, protecting the lungs from being overworked and allowing the left ventricle to strengthen. There are two other fetal shunts, the ductus venosus and the foramen ovale[MP]. the fetal vessel that connects the left pulmonary artery with the descending aorta; the ductus arteriosus normally regresses into a fibrous cord, the ligamentum arteriousum after birth[MP]" [http://en.wikipedia.org/wiki/Ductus_arteriosus, MESH:A07.541.278.395, MP:0010564] subset: efo_slim subset: pheno_slim synonym: "arterial canal" RELATED [MP:0010564] synonym: "arterial duct" RELATED [MP:0010564] synonym: "Botallo's duct" RELATED [http://en.wikipedia.org/wiki/Ductus_arteriosus] synonym: "ductus arteriosis" RELATED [http://en.wikipedia.org/wiki/Ductus_arteriosus] synonym: "ductus arteriosum" RELATED [http://en.wikipedia.org/wiki/Ductus_arteriosus] synonym: "ductus botalli" RELATED [http://en.wikipedia.org/wiki/Ductus_arteriosus] synonym: "ductus Botallo" EXACT [MP:0010564] synonym: "ductus layton" RELATED [http://en.wikipedia.org/wiki/Ductus_arteriosus] synonym: "fetal ductus arteriosus" RELATED [MP:0010564] xref: Ductus:arteriosus xref: EFO:0002515 xref: EHDAA2:0000420 xref: EHDAA:6462 xref: EMAPA:17858 xref: FMA:79871 xref: galen:DuctusArteriosus xref: http://linkedlifedata.com/resource/umls/id/C0013273 xref: http://www.snomedbrowser.com/Codes/Details/253684002 xref: MA:0001947 xref: MESH:D004373 xref: NCIT:C52854 xref: UMLS:C0013273 {source="ncithesaurus:Ductus_Arteriosus"} xref: VHOG:0000923 is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0004573 ! systemic artery relationship: continuous_with UBERON:0002012 ! pulmonary artery relationship: continuous_with UBERON:0003123 ! pharyngeal arch artery 6 relationship: develops_from UBERON:0003123 {notes="left branch", source="embryology.ch"} ! pharyngeal arch artery 6 relationship: part_of UBERON:0004145 {source="EHDAA2"} ! outflow tract relationship: part_of UBERON:0011695 ! embryonic cardiovascular system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png property_value: UBPROP:0000001 "The temporary channel or blood vessel between the aorta and pulmonary artery in the fetus. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000923", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/ductus+arteriosus"} property_value: UBPROP:0000003 "On the other hand, in the sister clade of the actinopterygians, the sarcopterygians, the gill circulation is supplemented with lung ventilation. As a result, the pulmonary artery and vein and a functional ductus arteriosus arose as a major evolutionary innovation from the sixth arch, giving the organism a flexible shunt to balance blood supply to and from gills and lungs according to environmental conditions.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000923", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} [Term] id: UBERON:0005455 name: interventricular groove namespace: uberon def: "Either of the anterior and posterior grooves on the surface of the heart that lie over the interventricular septum and join at the apex." [http://www.merriam-webster.com/medical/interventricular%20sulcus] subset: pheno_slim synonym: "interventricular sulcus" RELATED [FMA:7223] xref: EHDAA:1918 xref: EMAPA:17336 xref: FMA:7223 xref: http://www.snomedbrowser.com/Codes/Details/277708006 xref: RETIRED_EHDAA2:0000884 xref: VHOG:0000790 relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0005458 name: left umbilical artery namespace: uberon synonym: "embryonic left umbilical artery" EXACT [VHOG:0000522] xref: EHDAA2:0000966 xref: EMAPA:16544 xref: FMA:18822 xref: VHOG:0000522 is_a: UBERON:0001310 ! umbilical artery relationship: develops_from UBERON:0005613 {notes="check this", source="EHDAA2"} ! left dorsal aorta relationship: develops_from UBERON:0011696 {notes="check this", source="EHDAA2"} ! left extraembryonic umbilical artery [Term] id: UBERON:0005459 name: left umbilical vein namespace: uberon def: "An umbilical vein that is in the left side of a multicellular organism." [OBOL:automatic] xref: EHDAA2:0000967 xref: EMAPA:16358 xref: EMAPA:16377 xref: FMA:70320 xref: http://www.snomedbrowser.com/Codes/Details/308833008 is_a: UBERON:0002066 ! umbilical vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0005460 name: left vitelline vein namespace: uberon def: "A vitelline vein that is in the left side of a multicellular organism." [OBOL:automatic] xref: EHDAA2:0000971 xref: EMAPA:16380 xref: EMAPA:16698 xref: FMA:70307 xref: http://www.snomedbrowser.com/Codes/Details/361446008 is_a: UBERON:0005487 ! vitelline vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0005464 name: median sacral artery namespace: uberon def: "The median sacral artery (or middle sacral artery) is a small vessel, which arises from the back of the aorta, a little above its bifurcation. It descends in the middle line in front of the fourth and fifth lumbar vertebræ, the sacrum and coccyx, and ends in the glomus coccygeum (coccygeal gland). From it, minute branches are said to pass to the posterior surface of the rectum. On the last lumbar vertebra it anastomoses with the lumbar branch of the iliolumbar artery; in front of the sacrum it anastomoses with the lateral sacral arteries, and sends offsets into the anterior sacral foramina. It is crossed by the left common iliac vein, and is accompanied by a pair of venæ comitantes; these unite to form a single vessel, which opens into the left common iliac vein." [http://en.wikipedia.org/wiki/Median_sacral_artery] synonym: "arteria sacralis mediana" RELATED LATIN [http://en.wikipedia.org/wiki/Median_sacral_artery] synonym: "coccygeal branches" RELATED [http://en.wikipedia.org/wiki/Median_sacral_artery] synonym: "middle sacral" RELATED [http://en.wikipedia.org/wiki/Median_sacral_artery] synonym: "Middle sacral artery" EXACT [FMA:14757] synonym: "middle sacral artery" RELATED [http://en.wikipedia.org/wiki/Median_sacral_artery] xref: EHDAA2:0001087 xref: EHDAA:2556 xref: EMAPA:19214 xref: FMA:14757 xref: http://en.wikipedia.org/wiki/Median_sacral_artery xref: http://www.snomedbrowser.com/Codes/Details/244282005 xref: VHOG:0000756 is_a: UBERON:0012254 ! abdominal aorta artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png [Term] id: UBERON:0005470 name: right umbilical artery namespace: uberon synonym: "embryonic right umbilical artery" EXACT [VHOG:0000523] xref: EHDAA2:0001760 xref: EMAPA:16545 xref: FMA:18821 xref: VHOG:0000523 is_a: UBERON:0001310 ! umbilical artery relationship: develops_from UBERON:0005622 {notes="check this", source="EHDAA2"} ! right dorsal aorta relationship: develops_from UBERON:0011697 {notes="check this", source="EHDAA2"} ! right extraembryonic umbilical artery [Term] id: UBERON:0005471 name: right umbilical vein namespace: uberon def: "An umbilical vein that is in the right side of a multicellular organism." [OBOL:automatic] xref: EHDAA2:0001761 xref: EMAPA:16359 xref: EMAPA:16378 xref: FMA:70319 xref: http://www.snomedbrowser.com/Codes/Details/361447004 is_a: UBERON:0002066 ! umbilical vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0005472 name: right vitelline vein namespace: uberon def: "A vitelline vein that is in the right side of a multicellular organism." [OBOL:automatic] xref: EHDAA2:0001766 xref: EMAPA:16381 xref: EMAPA:16699 xref: FMA:70306 xref: http://www.snomedbrowser.com/Codes/Details/361445007 is_a: UBERON:0005487 ! vitelline vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0005475 name: sigmoid sinus namespace: uberon def: "A portion of the lateral venous sinus, bulging prominently into the mastoid cavity, that serves as a principal conduit by which blood leaves the cranium[EPIC]. The sigmoid is drained by the internal jugular vein" [http://en.wikipedia.org/wiki/Sigmoid_sinus, http://palaeos.com/vertebrates/glossary/glossaryS.html] synonym: "sulcus sigmoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Sigmoid_sinus] xref: EHDAA2:0001838 xref: EHDAA:9880 xref: EMAPA:19060 xref: FMA:50782 xref: http://www.snomedbrowser.com/Codes/Details/279264003 xref: ncithesaurus:Sigmoid_Sinus xref: Sigmoid:sinus xref: VHOG:0001337 is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus relationship: part_of UBERON:0001586 ! internal jugular vein relationship: tributary_of UBERON:0001586 {source="Palaeos"} ! internal jugular vein property_value: depicted:by Gray488:blue.gif property_value: UBPROP:0000001 "The sigmoid sinuses, within a human head, are 2 areas beneath the brain, which allow blood veins to span the area, from the center of the head downward. They drain from the transverse sinuses (under the back of the brain) to the internal jugular vein. Each sigmoid sinus begins beneath the temporal bone and follows a tortuous course to the jugular foramen, at which point the sinus becomes continuous with the internal jugular vein[Wikipedia:Sigmoid_sinus]." xsd:string {source="Sigmoid:sinus"} [Term] id: UBERON:0005481 name: tentorial sinus namespace: uberon def: "An unpaired venous dural sinus that receives blood from the superior cerebellar veins and inferior sagittal sinus and drains into the confluence of sinuses." [http://en.wikipedia.org/wiki/Straight_sinus] synonym: "rectus sinus" RELATED [http://en.wikipedia.org/wiki/Straight_sinus] synonym: "sinus rectus" RELATED LATIN [http://en.wikipedia.org/wiki/Straight_sinus] synonym: "straight sinus" RELATED [http://en.wikipedia.org/wiki/Straight_sinus] synonym: "straight sinus vein" RELATED [http://en.wikipedia.org/wiki/Straight_sinus] xref: EHDAA2:0002003 xref: EHDAA:9882 xref: FMA:50769 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3188 xref: http://www.snomedbrowser.com/Codes/Details/279261006 xref: ncithesaurus:Straight_Sinus xref: Straight:sinus is_a: UBERON:0017640 {source="FMA"} ! unpaired venous dural sinus property_value: depicted:by Gray488:blue.gif property_value: UBPROP:0000012 "retired in NCIT" xsd:string {external_ontology="NCIT"} [Term] id: UBERON:0005484 name: tricuspid valve leaflet namespace: uberon def: "A valve leaflet that is part of a tricuspid valve." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "leaflet of tricuspid valve" EXACT [FMA:7237] synonym: "tricuspid valve leaflet" EXACT [FMA:7237] synonym: "tricuspid valve leaflets" EXACT [VHOG:0000821] synonym: "tricuspid valvular leaflet" EXACT [FMA:7237] xref: EMAPA:18630 xref: FMA:7237 xref: http://www.snomedbrowser.com/Codes/Details/276830008 xref: MA:0003180 xref: RETIRED_EHDAA2:0002082 xref: VHOG:0000821 is_a: UBERON:0011741 ! cardiac valve leaflet intersection_of: UBERON:0011741 ! cardiac valve leaflet intersection_of: part_of UBERON:0002134 ! tricuspid valve relationship: attaches_to UBERON:0014851 ! chorda tendinea of left ventricle relationship: part_of UBERON:0002134 ! tricuspid valve property_value: UBPROP:0000001 "Leaf of caridac valve which has as its parts the anterior, posterior and septal leaflets that is is attached to the chorda tendinea of the right ventricle and the fibrous ring of tricuspid valve." xsd:string {source="FMA:7237"} property_value: UBPROP:0000003 "The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000821", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)"} [Term] id: UBERON:0005485 name: valve of inferior vena cava namespace: uberon def: "the semicircular fold of endocardium located on the right atrium at the point of attachment of the inferior vena cava; during development this valve helps direct the flow of oxygen-rich blood through the right atrium into the left cardiac atrium via the foramen ovale (preventing blood flowing into the right ventricle)" [http://en.wikipedia.org/wiki/Valve_of_inferior_vena_cava, ISBN:0-683-40008-8, MP:0010490] subset: pheno_slim synonym: "eustachean valve" EXACT [FMA:9240] synonym: "eustachian valve" EXACT [FMA:9240] synonym: "inferior vena cava valve" EXACT [FMA:9240] synonym: "valve of the inferior vena cava" RELATED [http://en.wikipedia.org/wiki/Valve_of_inferior_vena_cava] synonym: "valvula venae cavae inferioris" RELATED LATIN [http://en.wikipedia.org/wiki/Valve_of_inferior_vena_cava] xref: EHDAA2:0002166 xref: EHDAA:8631 xref: FMA:9240 xref: http://en.wikipedia.org/wiki/Valve_of_inferior_vena_cava xref: http://linkedlifedata.com/resource/umls/id/C0225848 xref: http://www.snomedbrowser.com/Codes/Details/277722006 xref: NCIT:C32544 xref: UMLS:C0225848 {source="ncithesaurus:Eustachian_Valve"} is_a: UBERON:0000946 ! cardial valve is_a: UBERON:0006675 ! venous valve relationship: part_of UBERON:0001072 ! posterior vena cava property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png property_value: IAO:0000116 "this class should be subdivided into the embryonic structure and the vestigial adult remnant, a small endocardialfold" xsd:string property_value: UBPROP:0000001 "Vestigial cardiac valve which is continuous with the valve of the coronary sinus and the crista terminalis." xsd:string {source="FMA:9240"} [Term] id: UBERON:0005486 name: venous dural sinus namespace: uberon def: "A venous channel found between layers of dura mater in the brain. Receives blood from internal and external veins of the brain, receive cerebrospinal fluid (CSF) from the subarachnoid space, and ultimately empty into the internal jugular vein." [http://en.wikipedia.org/wiki/Dural_venous_sinuses] synonym: "cranial dural venous sinus" EXACT [FMA:50762] synonym: "dural sinus" EXACT [FMA:50762] synonym: "dural vein" EXACT [MA:0002113] synonym: "dural venous sinus" EXACT [FMA:50762] synonym: "s. durae matris" RELATED LATIN [http://en.wikipedia.org/wiki/Dural_venous_sinuses] synonym: "venous dural" EXACT [EHDAA:6491] synonym: "venous dural sinus" EXACT [EHDAA2:0002169] xref: EHDAA2:0002169 xref: EHDAA:6491 xref: EMAPA:18634 xref: FMA:50762 xref: http://en.wikipedia.org/wiki/Dural_venous_sinuses xref: http://www.snomedbrowser.com/Codes/Details/54944003 xref: MA:0002113 xref: NCIT:C102627 xref: VHOG:0001004 is_a: UBERON:0006615 ! venous sinus relationship: part_of UBERON:0003711 {source="FMA"} ! brachiocephalic vein property_value: depicted:by Gray488:blue.gif property_value: IAO:0000116 "the MA placement should be checked" xsd:string [Term] id: UBERON:0005487 name: vitelline vein namespace: uberon def: "the paired veins that carry blood from the yolk sac back to the embryo" [MGI:csmith, MP:0010666] subset: pheno_slim subset: vertebrate_core synonym: "embryonic vitelline vein" EXACT [VHOG:0000401] synonym: "omphalomesenteric vein" RELATED [EMAPA:16244] synonym: "vascular vitelline network" EXACT [XAO:0004147] synonym: "vein of omphalomesenteric system" RELATED [] synonym: "vena vitellina" EXACT LATIN [http://en.wikipedia.org/wiki/Vitelline_veins] synonym: "vitelline veins" RELATED PLURAL [XAO:0004147] xref: EMAPA:36021 xref: FMA:70305 xref: http://linkedlifedata.com/resource/umls/id/C0231091 xref: http://www.snomedbrowser.com/Codes/Details/2730004 xref: http://www.snomedbrowser.com/Codes/Details/308832003 xref: NCIT:C34329 xref: RETIRED_EHDAA2:0002209 xref: UMLS:C0231091 {source="ncithesaurus:Vitelline_Vein"} xref: VHOG:0000401 xref: Vitelline:veins xref: XAO:0000376 xref: XAO:0004147 is_a: UBERON:0004365 ! vitelline blood vessel is_a: UBERON:0013140 ! systemic vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray475.png property_value: UBPROP:0000001 "One of two veins that run upward at first in front, and subsequently on either side of the intestinal canal. They unite on the ventral aspect of the canal, and beyond this are connected to one another by two anastomotic branches, one on the dorsal, and the other on the ventral aspect of the duodenal portion of the intestine, which is thus encircled by two venous rings; into the middle or dorsal anastomosis the superior mesenteric vein opens. The portions of the veins above the upper ring become interrupted by the developing liver and broken up by it into a plexus of small capillary-like vessels termed sinusoids.[XAO]" xsd:string {ontology="XAO", source="XAO:0004147"} property_value: UBPROP:0000003 "Within each vertebrate group, the veins compose a few main functional systems that arise embryologically from what seems to be a common developmental pattern. (...) Early in development, three major sets of paired veins are present: the vitelline veins from the yolk sac, the cardinal veins from the body of the embryo itself, and the lateral abdominal veins from the pelvic region. The paired vitelline veins are among the first vessels to appear in the embryo. They arise over the yolk and follow the yolk stalk into the body. They then turn anteriorly, continue along the gut, and enter the sinus venosus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000401", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.460"} property_value: UBPROP:0000012 "check zfa (no text def). Check vitelline/omphalomesenteric distinction in XAO" xsd:string {external_ontology="XAO"} [Term] id: UBERON:0005489 name: anterior interventricular sulcus namespace: uberon def: "The ventricles of the heart are separated by two grooves, one of which, the anterior longitudinal sulcus (or anterior interventricular sulcus), is situated on the sternocostal surface of the heart, close to its left margin. The other groove separating the ventricles is the posterior interventricular sulcus." [http://en.wikipedia.org/wiki/Anterior_interventricular_sulcus] synonym: "anterior interventricular groove" EXACT [FMA:7177] synonym: "anterior interventricular groove" RELATED [http://en.wikipedia.org/wiki/Anterior_interventricular_sulcus] synonym: "anterior longitudinal sulcus" RELATED [http://en.wikipedia.org/wiki/Anterior_interventricular_sulcus] synonym: "sulcus interventricularis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_interventricular_sulcus] xref: FMA:7177 xref: http://en.wikipedia.org/wiki/Anterior_interventricular_sulcus xref: http://www.snomedbrowser.com/Codes/Details/277710008 is_a: UBERON:0005455 {source="FMA"} ! interventricular groove disjoint_from: UBERON:0005490 {source="lexical"} ! posterior interventricular sulcus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png [Term] id: UBERON:0005490 name: posterior interventricular sulcus namespace: uberon def: "The ventricles are separated by two grooves, one of which, the anterior longitudinal sulcus, is situated on the sternocostal surface of the heart, close to its left margin, the other posterior longitudinal sulcus (posterior interventricular sulcus, inferior interventricular groove), on the diaphragmatic surface near the right margin. In it run the posterior interventricular artery and middle cardiac vein." [http://en.wikipedia.org/wiki/Posterior_interventricular_sulcus] synonym: "diaphragmatic interventricular groove" EXACT [FMA:7178] synonym: "inferior interventricular groove" EXACT [FMA:7178] synonym: "posterior interventricular groove" EXACT [FMA:7178] synonym: "posterior interventricular groove" RELATED [http://en.wikipedia.org/wiki/Posterior_interventricular_sulcus] synonym: "posterior longitudinal sulci" RELATED [http://en.wikipedia.org/wiki/Posterior_interventricular_sulcus] synonym: "posterior longitudinal sulcus" RELATED [http://en.wikipedia.org/wiki/Posterior_interventricular_sulcus] synonym: "sulcus interventricularis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_interventricular_sulcus] xref: FMA:7178 xref: http://en.wikipedia.org/wiki/Posterior_interventricular_sulcus xref: http://www.snomedbrowser.com/Codes/Details/277711007 is_a: UBERON:0005455 {source="FMA"} ! interventricular groove property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray491.png [Term] id: UBERON:0005492 name: hyaloid vessel namespace: uberon def: "A blood vessel that is associated with the lens. In mammals, this is transient and normally nourishes the retina, immature lens and primary vitreous of the developing eye." [MP:0001289, ZFA:0005046] subset: vertebrate_core synonym: "hyaloid blood vessels" EXACT PLURAL [XAO:0004154] synonym: "hyaloid capillary system" RELATED [MP:0001289] synonym: "hyaloid vascular system" RELATED [MP:0001289] synonym: "hyaloid vasculature" RELATED [ZFA:0005046] synonym: "hyaloid vessels" EXACT PLURAL [TAO:0005046] xref: EHDAA:4735 xref: TAO:0005046 xref: VHOG:0000232 xref: XAO:0004154 xref: ZFA:0005046 is_a: UBERON:0003496 ! head blood vessel relationship: part_of UBERON:0002203 {source="ZFA-modified"} ! vasculature of eye property_value: IAO:0000116 "we are currently conflating vessel and vasculature - we may wish to split this class - see also vascular plexus term. The ZFA class represents the vasculature" xsd:string [Term] id: UBERON:0005599 name: common dorsal aorta namespace: uberon xref: EHDAA2:0000307 xref: EHDAA:1251 xref: EMAPA:16327 xref: MA:0000477 is_a: UBERON:0000947 ! aorta is_a: UBERON:0003513 ! trunk blood vessel relationship: part_of UBERON:0005805 ! dorsal aorta [Term] id: UBERON:0005601 name: dorsal mesocardium namespace: uberon def: "The part of the mesocardium dorsal to the embryonic heart; it breaks down to form the transverse sinus of the pericardium." [MA:th] subset: pheno_slim synonym: "dorsal heart mesentery" RELATED [EMAPA:16213] synonym: "dorsal mesentery of heart" RELATED [EMAPA:16213] xref: EHDAA2:0000413 xref: EHDAA:434 xref: EMAPA:16213 xref: http://www.snomedbrowser.com/Codes/Details/361454005 xref: MA:0000482 xref: VHOG:0000432 is_a: UBERON:0010277 {source="MA"} ! mesocardium property_value: UBPROP:0000001 "The mesentery of the embryonic heart. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000432", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005606 name: hyaloid cavity namespace: uberon xref: EHDAA2:0000789 xref: EHDAA:4733 xref: EMAPA:17302 xref: FMA:312291 xref: MA:0000272 xref: VHOG:0001477 relationship: part_of UBERON:0002203 ! vasculature of eye property_value: UBPROP:0000001 "A depression in the front of the vitreous body, lodging the lens. [adapted_from_the_definition_of_the_hyaloid_fossa]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001477", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/hyaloid+fossa"} [Term] id: UBERON:0005607 name: hyaloid vascular plexus namespace: uberon synonym: "hyaloid vascular system" RELATED [] xref: EHDAA2:0000790 xref: EHDAA:5703 xref: EMAPA:17303 xref: FMA:312298 xref: MA:0001283 xref: VHOG:0000442 xref: XAO:0004157 is_a: UBERON:0005629 ! vascular plexus relationship: located_in UBERON:0005606 ! hyaloid cavity relationship: part_of UBERON:0009141 {source="EHDAA2"} ! craniocervical region vein [Term] id: UBERON:0005608 name: hyoid artery namespace: uberon def: "The second arch becomes the hyoid artery, which is prominent in early development and normally persists as the caroticotympanic branch of the ICA[Padget]" [http://www.ajnr.org/cgi/content/full/21/3/572] xref: EHDAA:3342 xref: EMAPA:17308 xref: FMA:49474 xref: MA:0001969 xref: RETIRED_EHDAA2:0000792 xref: VHOG:0001409 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003119 {source="http://www.ajnr.org/cgi/content/full/21/3/572"} ! pharyngeal arch artery 2 [Term] id: UBERON:0005609 name: iliac artery namespace: uberon def: "Any of the arteries that arise from a bifurcation of the aorta supplying the pelvic or abdomen. Examples: Common iliac artery, External iliac artery, Internal iliac artery" [http://en.wikipedia.org/wiki/Iliac_artery, https://orcid.org/0000-0002-6601-2165] subset: grouping_class xref: BTO:0004665 xref: EHDAA:2551 xref: EMAPA:17309 xref: galen:IliacArtery xref: http://linkedlifedata.com/resource/umls/id/C0020887 xref: http://www.snomedbrowser.com/Codes/Details/244330006 xref: Iliac:artery xref: MA:0001971 xref: MESH:D007083 xref: NCIT:C12733 xref: RETIRED_EHDAA2:0000807 xref: UMLS:C0020887 {source="ncithesaurus:Iliac_Artery"} xref: XAO:0000361 is_a: UBERON:0004573 ! systemic artery disjoint_from: UBERON:0005628 ! ileal artery property_value: IAO:0000232 "this is an extremely loose and flexible grouping class that is the superclass of the mammalian common iliac and its main brahces, together with analagous structures in other tetrapods" xsd:string property_value: UBPROP:0000012 "we place the XAO structure here for now. In terms of analagy, it is more closely related to common iliac, but the relationships currently attached to this class are mammal specific" xsd:string {external_ontology="XAO"} [Term] id: UBERON:0005610 name: iliac vein namespace: uberon def: "Any of the three veins including the common, external and internal iliac veins." [ncithesaurus:Iliac_Vein] synonym: "pelvic vein" RELATED [] xref: EHDAA2:0000811 xref: EMAPA:37151 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C0020888 xref: http://www.snomedbrowser.com/Codes/Details/281481002 xref: MA:0002142 xref: MESH:D007084 xref: NCIT:C12734 xref: UMLS:C0020888 {source="ncithesaurus:Iliac_Vein"} is_a: UBERON:0001638 ! vein [Term] id: UBERON:0005612 name: intercostal artery namespace: uberon def: "One of a group of arteries that supply the area between the ribs ('costae'), called the intercostal space." [http://en.wikipedia.org/wiki/Intercostal_arteries] xref: EHDAA2:0000840 xref: EHDAA:5307 xref: EMAPA:18753 xref: http://linkedlifedata.com/resource/umls/id/C0459917 xref: http://www.snomedbrowser.com/Codes/Details/281134007 xref: MA:0001981 xref: NCIT:C32821 xref: UMLS:C0459917 {source="ncithesaurus:Intercostal_Artery"} is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001515 ! thoracic aorta relationship: develops_from UBERON:0005599 {source="EHDAA2"} ! common dorsal aorta relationship: part_of UBERON:0001515 ! thoracic aorta property_value: IAO:0000116 "TODO - add children. Mouse has dorsal, ventral and upper; humans have anterior, posterior; teleost has segmental" xsd:string [Term] id: UBERON:0005613 name: left dorsal aorta namespace: uberon xref: EHDAA2:0000936 xref: EHDAA:404 xref: EMAPA:16205 xref: http://www.snomedbrowser.com/Codes/Details/361403005 xref: MA:0000478 xref: VHOG:0000484 is_a: UBERON:0000947 ! aorta is_a: UBERON:0003513 ! trunk blood vessel relationship: part_of UBERON:0005805 ! dorsal aorta property_value: UBPROP:0000003 "A study of embryos shows that in all vertebrates six arterial arches link the ventral aorta with a pair of lateral dorsal aortae on each side of the body. The latter unite posteriorly to form a single median dorsal aorta wich takes blood to the body.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000484", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0174480198 Roberts MBV, Biology: a functional approach (1986) p.572"} property_value: UBPROP:0000008 "Contributes to the arch of aorta in humans" xsd:string {source="http://emedicine.medscape.com/article/899609-overview"} [Term] id: UBERON:0005616 name: mesenteric artery namespace: uberon def: "Arteries which arise from the abdominal aorta and distribute to most of the intestines." [http://en.wikipedia.org/wiki/Mesenteric_artery, MESH:A07.231.114.565] xref: BTO:0000779 xref: EHDAA2:0001123 xref: EHDAA:4343 xref: EMAPA:17312 xref: http://linkedlifedata.com/resource/umls/id/C0025465 xref: http://www.snomedbrowser.com/Codes/Details/281084003 xref: MA:0002003 xref: Mesenteric:artery xref: MESH:D008638 xref: NCIT:C52975 xref: UMLS:C0025465 {source="ncithesaurus:Mesenteric_Artery"} xref: VHOG:0001117 xref: XAO:0000370 is_a: UBERON:0012254 ! abdominal aorta artery property_value: IAO:0000116 "includes posterior and anterior mesenteric arteries, which branch from the dorsal aorta (see Kardong), and superior and inferior mesenteric arteries" xsd:string [Term] id: UBERON:0005617 name: mesenteric vein namespace: uberon def: "A vein that returns blood from the intestines." [http://en.wikipedia.org/wiki/Mesenteric_vein, MESH:A07.231.908.670.385] synonym: "intestinal vein" RELATED [http://orcid.org/0000-0002-6601-2165] xref: BTO:0002781 xref: EHDAA:4442 xref: EMAPA:17348 xref: http://linkedlifedata.com/resource/umls/id/C0025473 xref: http://www.snomedbrowser.com/Codes/Details/304045008 xref: MA:0002177 xref: Mesenteric:vein xref: MESH:D008642 xref: NCIT:C53055 xref: RETIRED_EHDAA2:0001125 xref: UMLS:C0025473 {source="ncithesaurus:Mesenteric_Vein"} is_a: UBERON:0001638 ! vein property_value: UBPROP:0000008 "In humans the inferior mesenteric vein empties into the splenic vein, the superior mesenteric vein joins the splenic vein to form the portal vein" xsd:string [Term] id: UBERON:0005622 name: right dorsal aorta namespace: uberon xref: EHDAA2:0001720 xref: EHDAA:406 xref: EMAPA:16206 xref: http://www.snomedbrowser.com/Codes/Details/361404004 xref: MA:0000479 xref: VHOG:0000485 is_a: UBERON:0000947 ! aorta is_a: UBERON:0003513 ! trunk blood vessel relationship: part_of UBERON:0005805 ! dorsal aorta property_value: UBPROP:0000003 "A study of embryos shows that in all vertebrates six arterial arches link the ventral aorta with a pair of lateral dorsal aortae on each side of the body. The latter unite posteriorly to form a single median dorsal aorta wich takes blood to the body.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000485", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0174480198 Roberts MBV, Biology: a functional approach (1986) p.572"} property_value: UBPROP:0000008 "Normally regresses in humans" xsd:string {source="http://emedicine.medscape.com/article/899609-overview"} [Term] id: UBERON:0005623 name: semi-lunar valve namespace: uberon def: "the valves that gate the flow of blood from the ventricles into the aorta and pulmonary trunk" [MGI:pvb, MP:0002746] subset: pheno_slim synonym: "semilunar valve" EXACT [MA:0002790] synonym: "semilunar valves" EXACT PLURAL [MA:0002790] xref: EHDAA2:0001823 xref: EHDAA:4408 xref: EMAPA:35760 xref: MA:0002790 xref: VHOG:0001393 is_a: UBERON:0000946 ! cardial valve property_value: UBPROP:0000003 "Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001393", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)"} property_value: UBPROP:0000010 "Lacks chordae tendinae" xsd:string [Term] id: UBERON:0005624 name: suprarenal artery namespace: uberon def: "Artery that supplies blood to the adrenal glands." [http://en.wikipedia.org/wiki/Adrenal_artery] subset: grouping_class synonym: "adrenal artery" RELATED [http://en.wikipedia.org/wiki/Adrenal_artery, MA:0001914] xref: Adrenal:artery xref: EHDAA2:0001965 xref: EHDAA:8596 xref: EMAPA:37124 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/181342004 xref: MA:0001914 xref: NCIT:C33708 xref: ncithesaurus:Adrenal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0005628 name: ileal artery namespace: uberon def: "The ileal arteries feed oxygenated blood into the ileum, a portion of the small intestine in mammals, reptiles, and birds. They are branches of the superior mesenteric artery." [http://en.wikipedia.org/wiki/Ileal_arteries] synonym: "arteriae ileales" RELATED LATIN [http://en.wikipedia.org/wiki/Ileal_arteries] synonym: "ileal branch of superior mesenteric artery" EXACT [FMA:14809] xref: FMA:14809 xref: galen:IlealArteries xref: http://www.snomedbrowser.com/Codes/Details/265479003 xref: Ileal:arteries is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001182 ! superior mesenteric artery relationship: part_of UBERON:0001182 ! superior mesenteric artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/86/Gray535.png [Term] id: UBERON:0005629 name: vascular plexus namespace: uberon def: "A vascular network formed by frequent anastomoses between the blood vessels (arteries or veins) of a part." [http://www.medilexicon.com/medicaldictionary.php?t=70052] synonym: "plexus vasculosus" EXACT LATIN [] xref: AEO:0000219 xref: EHDAA2:0004112 xref: EMAPA:35904 xref: FMA:5900 xref: XAO:0004143 is_a: UBERON:0002049 ! vasculature relationship: has_part UBERON:0001981 ! blood vessel property_value: UBPROP:0000001 "In a vascular plexus, the contents of the vessels mix. A plexus allows blood to flow via multiple routes. If one branch of the plexus is obstructed, the blood may flow via the open branches[Wikipedia:Plexus#Circulatory_system]." xsd:string {source="Circulatory_system"} [Term] id: UBERON:0005720 name: hindbrain venous system namespace: uberon def: "A venous system that is part of a hindbrain." [OBOL:automatic] synonym: "rhombencephalon venous system" RELATED [VHOG:0001322] xref: EHDAA2:0000776 xref: EMAPA:18632 xref: VHOG:0001322 is_a: UBERON:0004582 ! venous system [Term] id: UBERON:0005734 name: tunica adventitia of blood vessel namespace: uberon def: "The outermost layer of a blood vessel, composed mainly of fibrous tissue." [http://en.wikipedia.org/wiki/Tunica_externa_(vessels), ISBN:0073040584] synonym: "adventitia externa" EXACT [http://en.wikipedia.org/wiki/Tunica_externa_(vessels)] synonym: "external coat" RELATED [http://en.wikipedia.org/wiki/Tunica_externa_(vessels)] synonym: "tunica adventitia" EXACT [http://en.wikipedia.org/wiki/Tunica_externa_(vessels)] synonym: "tunica adventitia of vessel" EXACT [http://en.wikipedia.org/wiki/Tunica_externa_(vessels)] synonym: "tunica adventitia vasorum" RELATED LATIN [http://en.wikipedia.org/wiki/Tunica_externa_(vessels)] synonym: "tunica externa vasorum" RELATED LATIN [http://en.wikipedia.org/wiki/Tunica_externa_(vessels)] xref: BTO:0002010 xref: EMAPA:36299 xref: http://en.wikipedia.org/wiki/Tunica_externa_(vessels) xref: http://linkedlifedata.com/resource/umls/id/C0225342 xref: http://www.snomedbrowser.com/Codes/Details/61066005 xref: NCIT:C33818 xref: UMLS:C0225342 {source="ncithesaurus:Tunica_Adventitia"} is_a: UBERON:0004797 {source="cjm"} ! blood vessel layer property_value: depicted:by Illu:artery.jpg property_value: IAO:0000116 "TODO - note terminological problems. WP says tunica external layer of blood vessel. FMA says tunica externa = adventitia, and is FMA adventitia covers other kinds of vessels. Here we opt for a lengthier name that attempts to disambiguate. There is no precise FMA equivalent, as FMA has tunica externa of arteries, veins, genital ducts etc as siblings" xsd:string property_value: UBPROP:0000001 "The outermost layer of a blood vessel, surrounding the tunica media. It is mainly composed of collagen. The collagen serves to anchor the blood vessel to nearby organs, giving it stability[Wikipedia:Tunica_externa_(vessels)]." xsd:string {source="http://en.wikipedia.org/wiki/Tunica_externa_(vessels)"} [Term] id: UBERON:0005740 name: tunica intima of artery namespace: uberon def: "A tunica intima that is part of a artery." [OBOL:automatic] synonym: "arterial intima" EXACT [EV:0100028] synonym: "tunica interna (intima)(arteriae)" EXACT [FMA:14272] xref: EMAPA:36293 xref: EV:0100028 xref: FMA:14272 xref: galen:IntimaOfArtery xref: http://www.snomedbrowser.com/Codes/Details/40022005 is_a: UBERON:0004797 ! blood vessel layer relationship: part_of UBERON:0000415 ! artery wall [Term] id: UBERON:0005800 name: section of aorta namespace: uberon def: "Any portion of the aorta including the ascending and descending aorta, and aortic arch or a portion of the aortic orifice of the left ventricle." [ncithesaurus:Aortic_Segment] synonym: "aortic section" EXACT [] synonym: "aortic segment" RELATED [FMA:13087] synonym: "portion of aorta" RELATED [] synonym: "segment of aorta" RELATED [FMA:13087] xref: FMA:13087 xref: http://linkedlifedata.com/resource/umls/id/C0506947 xref: http://www.snomedbrowser.com/Codes/Details/119203005 xref: NCIT:C34027 xref: UMLS:C0506947 {source="ncithesaurus:Aortic_Segment"} relationship: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0005805 name: dorsal aorta namespace: uberon def: "The dorsal aorta is a blood vessel in a single-pass circulatory system that carries oxygenated blood from the gills to the rest of the body. In a single-pass circulatory system blood passes once through the heart to supply the body once." [GO:0035907, https://sourceforge.net/p/geneontology/ontology-requests/8525/] subset: vertebrate_core synonym: "aorta dorsalis" EXACT LATIN [XAO:0000051] synonym: "aortae dorsales" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_aorta] synonym: "DA" EXACT [ZFA:0000014] synonym: "dorsal aorta root" RELATED [VHOG:0000264] synonym: "dorsal aortae" RELATED PLURAL [http://en.wikipedia.org/wiki/Dorsal_aorta] synonym: "dorsal aortic root" RELATED [VHOG:0000264] synonym: "dorsal aortæ" RELATED PLURAL [http://en.wikipedia.org/wiki/Dorsal_aorta] xref: AAO:0011029 xref: BTO:0004673 xref: Dorsal:aorta xref: EHDAA:402 xref: EMAPA:18606 xref: http://www.snomedbrowser.com/Codes/Details/338637006 xref: TAO:0000014 xref: VHOG:0000264 xref: XAO:0000051 xref: ZFA:0000014 is_a: UBERON:0000947 ! aorta is_a: UBERON:0003513 ! trunk blood vessel relationship: develops_from UBERON:0001917 ! endothelium of artery relationship: part_of UBERON:0002201 ! vasculature of trunk property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray459.png property_value: UBPROP:0000001 "Each primitive aorta receives anteriorly a vein 'the vitelline vein' from the yolk-sac, and is prolonged backward on the lateral aspect of the notochord under the name of the dorsal aorta. The dorsal aortae give branches to the yolk-sac, and are continued backward through the body-stalk as the umbilical arteries to the villi of the chorion. The two dorsal aortae combine to become the descending aorta in later development[WP]." xsd:string {source="Dorsal:aorta"} property_value: UBPROP:0000001 "Principal unpaired, median artery of the trunk, leading from the paired roots (radices) of the dorsal aorta to the caudal artery. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000014", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The artery in vertebrate embryos that transports blood from the aortic arches to the trunk and limbs. In adult fish it is a major artery that carries oxygenated blood from the efferent branchial arteries to branches that supply the body organ. In adult tetrapods it arises from the systemic arch" xsd:string {source="BTO:0004673"} property_value: UBPROP:0000002 "relationship loss: part_of axial vasculature (TAO:0001073)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000014", ontology="TAO"} property_value: UBPROP:0000003 "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000264", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620"} [Term] id: UBERON:0005806 name: portal system namespace: uberon def: "In the circulatory system of animals, a portal venous system occurs when a capillary bed drains into another capillary bed through veins, without first going through the heart. Both capillary beds and the blood vessels that connect them are considered part of the portal venous system. They are relatively uncommon as the majority of capillary beds drain into veins which then drain into the heart, not into another capillary bed. Portal venous systems are considered venous because the blood vessels that join the two capillary beds are either veins or venules. Examples of such systems include the hepatic portal system and the hypophyseal portal system. Unqualified, 'portal venous system' often refers to the hepatic portal system. For this reason, 'portal vein' most commonly refers to the hepatic portal vein[WP]." [http://en.wikipedia.org/wiki/Portal_venous_system] synonym: "portal venous system" EXACT [FMA:45628] xref: FMA:45628 xref: http://en.wikipedia.org/wiki/Portal_venous_system xref: http://linkedlifedata.com/resource/umls/id/C0226727 xref: http://www.snomedbrowser.com/Codes/Details/362063001 xref: MESH:D011168 xref: NCIT:C33344 xref: UMLS:C0226727 {source="ncithesaurus:Portal_Venous_System"} is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0005912 name: transitional epithelium of major calyx namespace: uberon def: "An urothelium of ureter that is part of a mucosa of major calyx." [OBOL:automatic] synonym: "urothelium of major calyx" EXACT [OBOL:automatic] xref: FMA:263266 relationship: part_of UBERON:0005007 ! mucosa of major calyx [Term] id: UBERON:0005946 name: outflow tract of atrium namespace: uberon def: "An outflow tract that is part of a cardiac atrium." [OBOL:automatic] synonym: "outflow part of atrium" EXACT [FMA:14141] xref: FMA:14141 is_a: UBERON:0004145 ! outflow tract intersection_of: UBERON:0004145 ! outflow tract intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: continuous_with UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0005953 name: outflow part of right ventricle namespace: uberon def: "Anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminating in the pulmonary trunk" [MP:0010428] synonym: "arterial cone" RELATED [MP:0010428] synonym: "conus arteriosus" RELATED [MP:0010428] synonym: "conus arteriosus (infundibulum)" EXACT [FMA:7216] synonym: "infundibulum" BROAD [http://en.wikipedia.org/wiki/Conus_arteriosus] synonym: "infundibulum of right ventricle" EXACT [FMA:7216] synonym: "infundibulum of right ventricle" EXACT [MP:0010428] synonym: "outflow tract of right ventricle" EXACT [FMA:7216] synonym: "pulmonary cone" RELATED [MP:0010428] synonym: "pulmonary conus" EXACT [FMA:7216] synonym: "pulmonary conus" RELATED [MP:0010428] synonym: "right ventricle pulmonary outflow tract" EXACT [MP:0010428] synonym: "right ventricular outflow tract" EXACT [MP:0010428] synonym: "RVOT" EXACT ABBREVIATION [MP:0010428] xref: EMAPA:37926 {source="MA:th"} xref: FMA:7216 xref: http://linkedlifedata.com/resource/umls/id/C1881209 xref: http://www.snomedbrowser.com/Codes/Details/244379003 xref: NCIT:C61368 xref: UMLS:C1881209 {source="ncithesaurus:Infundibulum"} is_a: UBERON:0005337 ! outflow tract of ventricle intersection_of: UBERON:0005337 ! outflow tract of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: continuous_with UBERON:0002333 ! pulmonary trunk relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0005956 name: outflow part of left ventricle namespace: uberon def: "Anterosuperior fibrous portion of the left ventricle that connects to the ascending aorta." [MP:0010429] subset: pheno_slim synonym: "aortic vestibule" EXACT [MP:0010429] synonym: "aortic vestibule" EXACT [FMA:9473] synonym: "heart left ventricle outflow tract" EXACT [MP:0010429] synonym: "left ventricular outflow" EXACT [FMA:9473] synonym: "left ventricular outflow tract" EXACT [HP:0011103] synonym: "LVOT" EXACT ABBREVIATION [MP:0010429] synonym: "outflow tract of left ventricle" EXACT [FMA:9473] synonym: "Sibson vestibule" EXACT [MP:0010429] synonym: "vestibulum aortae" EXACT LATIN [FMA:9473, FMA:TA] xref: Aortic:vestibule xref: EMAPA:37925 {source="MA:th"} xref: FMA:9473 xref: http://www.snomedbrowser.com/Codes/Details/264070001 is_a: UBERON:0005337 ! outflow tract of ventricle intersection_of: UBERON:0005337 ! outflow tract of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0005965 name: outflow part of right atrium namespace: uberon def: "Outflow part of atrium which consists of wall and cavity of the outflow part of right atrium and the tricuspid valve.[FMA]" [FMA:9550, FMA:FMA] synonym: "main part of right atrium" EXACT [FMA:9550] synonym: "outflow tract of right atrium" EXACT [FMA:9550] xref: FMA:9550 is_a: UBERON:0005946 ! outflow tract of atrium intersection_of: UBERON:0005946 ! outflow tract of atrium intersection_of: part_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium [Term] id: UBERON:0005966 name: outflow part of left atrium namespace: uberon def: "An outflow tract of atrium that is part of a left atrium." [OBOL:automatic] synonym: "main part of left atrium" EXACT [FMA:9551] synonym: "outflow tract of left atrium" EXACT [FMA:9551] xref: FMA:9551 is_a: UBERON:0005946 ! outflow tract of atrium intersection_of: UBERON:0005946 ! outflow tract of atrium intersection_of: part_of UBERON:0002079 ! left cardiac atrium relationship: part_of UBERON:0002079 ! left cardiac atrium [Term] id: UBERON:0005967 name: conotruncal ridge namespace: uberon def: "One of the pair of spiral mesenchymal swellings in the primordial ventricular outflow tract, that eventually fuse to form the conotruncal septum, dividing the subvalvular outflow tract and contributing to the membranous interventricular septum[MP]" [http://www.ncbi.nlm.nih.gov/pubmed/8823298, MP:0010585] subset: pheno_slim synonym: "aortico-pulmonary spiral ridges" EXACT [MP:0010585] synonym: "bulbar ridge" EXACT [MP:0010585] synonym: "conotruncal cushion" EXACT [MP:0010585] synonym: "endocardial ridge" EXACT [MP:0010585] synonym: "outflow tract cushion" EXACT [MP:0010585] synonym: "outflow tract endocardial cushion" EXACT [MP:0010585] synonym: "spiral ridge" RELATED [VHOG:0001385] xref: EHDAA:1914 xref: EMAPA:17332 xref: RETIRED_EHDAA2:0000194 xref: VHOG:0001385 is_a: UBERON:0009751 ! cardiac mesenchyme relationship: part_of UBERON:0004706 ! bulbus cordis relationship: part_of UBERON:0005337 ! outflow tract of ventricle [Term] id: UBERON:0005973 name: blood-inner ear barrier namespace: uberon def: "The function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier" [MP:0004999] is_a: UBERON:0003496 ! head blood vessel [Term] id: UBERON:0005979 name: crista terminalis namespace: uberon def: "The vertical crest of the interior wall of the right atrium that lies to the right of the sinus of the vena cava and separates this from the remainder of the right atrium" [MP:0010495] subset: pheno_slim synonym: "crista terminalis atrii dextri" EXACT LATIN [FMA:9236, FMA:TA] synonym: "crista terminalis cordis" EXACT [FMA:9236] synonym: "crista terminalis of right atrium" EXACT [FMA:9236] xref: Crista:terminalis xref: EMAPA:37837 {source="MA:th"} xref: FMA:9236 xref: http://www.snomedbrowser.com/Codes/Details/277693004 relationship: contributes_to_morphology_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium [Term] id: UBERON:0005980 name: pectinate muscle namespace: uberon def: "The prominent ridges of atrial myocardium located on the inner surface of most of the right atrium and both the right and left auricular regions[MP]." [http://en.wikipedia.org/wiki/Musculi_pectinati, MP:0010496] subset: pheno_slim synonym: "musculi pectinati" EXACT PLURAL [http://en.wikipedia.org/wiki/Musculi_pectinati] synonym: "musculi pectinati atrii" RELATED LATIN [http://en.wikipedia.org/wiki/Musculi_pectinati] synonym: "musculi pectinati atrii dextri" NARROW LATIN [http://en.wikipedia.org/wiki/Musculi_pectinati] synonym: "musculi pectinati atrii sinistri" NARROW LATIN [http://en.wikipedia.org/wiki/Musculi_pectinati] synonym: "musculus pectinatus" EXACT LATIN [FMA:12226] synonym: "pectinate muscles" RELATED PLURAL [ZFA:0005809] xref: EMAPA:37935 {source="MA:th"} xref: FMA:12226 xref: http://www.snomedbrowser.com/Codes/Details/277718001 xref: Musculi:pectinati xref: ZFA:0005809 relationship: contributes_to_morphology_of UBERON:0002302 ! myocardium of atrium relationship: part_of UBERON:0002302 ! myocardium of atrium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png [Term] id: UBERON:0005981 name: vena cava sinus namespace: uberon def: "The portion of the cavity of the right atrium of the heart that receives the blood from the vena cavae and is separated from the rest of the atrium by the crista terminalis" [MP:0010497] subset: pheno_slim synonym: "cavity of inflow part of right atrium" EXACT [FMA:13246] synonym: "posterior right atrial cavity" EXACT [FMA:13246] synonym: "sinus venarum cavarum" EXACT [FMA:13246] xref: FMA:13246 relationship: contributes_to_morphology_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium [Term] id: UBERON:0005982 name: Bachmann's bundle namespace: uberon def: "The impulse conduction tract that originates in the sinoatrial node and transmits signal to the left atrium" [http://en.wikipedia.org/wiki/Bachmann's_bundle, MP:0010517] subset: pheno_slim synonym: "anterior interatrial band" EXACT [UBERON:gg] xref: Bachmann's:bundle xref: EMAPA:37435 {source="MA:th"} xref: FMA:83180 is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart relationship: part_of UBERON:0002350 ! conducting system of heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/05/ConductionsystemoftheheartwithouttheHeart.png [Term] id: UBERON:0005983 name: heart layer namespace: uberon def: "The laminar structure of the heart" [MP:0010545] subset: non_informative subset: pheno_slim relationship: contributes_to_morphology_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0005984 name: subendocardium layer namespace: uberon def: "The layer of loose fibrous tissue located between the endocardium and myocardium which contains the nerves and the impulse-conducting system (Purkinje fibers) of the heart" [MP:0010546] subset: pheno_slim xref: EMAPA:37968 {source="MA:th"} is_a: UBERON:0005983 ! heart layer relationship: adjacent_to UBERON:0002165 ! endocardium relationship: adjacent_to UBERON:0002349 ! myocardium relationship: has_part CL:0002068 ! Purkinje myocyte [Term] id: UBERON:0005985 name: coronary vessel namespace: uberon def: "Any of the arteries or veins that supply blood to the heart or return blood from the heart muscles to the circulation" [MP:0010551] subset: pheno_slim xref: Coronary:circulation xref: MESH:D003331 relationship: contributes_to_morphology_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart property_value: IAO:0000116 "TODO - change relation from part_of" xsd:string [Term] id: UBERON:0005986 name: left branch of atrioventricular bundle namespace: uberon def: "The left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]." [MP:0010566] subset: pheno_slim synonym: "crus sinistrum (fasciculi atrioventricularis)" EXACT [FMA:9487] synonym: "crus sinistrum fasciculi atrioventricularis" EXACT LATIN [FMA:9487, FMA:TA] synonym: "left bundle branch" EXACT [MP:0010566] synonym: "left bundle branch of bundle of His" EXACT [HP:0005172] synonym: "left bundle of atrioventricular bundle" EXACT [MP:0010566] synonym: "left crus of atrioventricular bundle" EXACT [MP:0010566] synonym: "left posterior branch" EXACT [MP:0010566] synonym: "left posterior bundle" EXACT [MP:0010566] xref: EMAPA:37358 {source="MA:th"} xref: FMA:9487 xref: galen:LeftBundleBranch xref: http://www.snomedbrowser.com/Codes/Details/277690001 is_a: UBERON:0010131 ! conducting tissue of heart is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle relationship: in_left_side_of UBERON:0002353 ! atrioventricular bundle relationship: part_of UBERON:0002353 ! atrioventricular bundle [Term] id: UBERON:0005987 name: right branch of atrioventricular bundle namespace: uberon def: "The right branch of the atrioventricular bundle that separates just below the bundle of His, descends the septal wall of the right ventricle and connects to the terminal Purkinje fibers[MP]." [MP:0010567] subset: pheno_slim synonym: "crus dextrum (fasciculi atrioventricularis)" EXACT [FMA:9486] synonym: "crus dextrum fasciculi atrioventricularis" EXACT LATIN [FMA:9486, FMA:TA] synonym: "right bundle" EXACT [FMA:9486, MP:0010567] synonym: "right bundle branch" EXACT [FMA:9486] synonym: "right bundle branch of bundle of His" EXACT [] synonym: "right right crus of atrioventricular bundle" EXACT [MP:0010567] synonym: "right ventricular bundle" EXACT [MP:0010567] xref: EMAPA:37359 {source="MA:th"} xref: FMA:9486 xref: galen:RightBundleBranch xref: http://www.snomedbrowser.com/Codes/Details/277689005 is_a: UBERON:0010131 ! conducting tissue of heart is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle relationship: in_right_side_of UBERON:0002353 ! atrioventricular bundle relationship: part_of UBERON:0002353 ! atrioventricular bundle [Term] id: UBERON:0005988 name: atrium myocardial trabecula namespace: uberon def: "The supporting bundles of muscular fibers lining the walls of the atrial myocardium" [MP:0010581, ZFA:0005810] subset: pheno_slim synonym: "atrial trabecula" EXACT [] synonym: "atrium myocardial trabeculae" EXACT PLURAL [MP:0010581] synonym: "trabecula of atrium" EXACT [] synonym: "trabecular layer of atrium" EXACT [] synonym: "trabecular layer of the atrium" EXACT [ZFA:0005810] xref: EMAPA:37432 {source="MA:th"} xref: ZFA:0005810 relationship: contributes_to_morphology_of UBERON:0002302 ! myocardium of atrium relationship: part_of UBERON:0002302 ! myocardium of atrium relationship: part_of UBERON:0004124 {source="ZFA"} ! myocardium trabecular layer [Term] id: UBERON:0005989 name: atrioventricular septum namespace: uberon def: "The wall of the heart that separates the right atrium and left ventricle; and is located just above the septal cusp of the tricuspid valve" [MP:0010592] subset: pheno_slim synonym: "membranous atrioventricular septum" EXACT [FMA:7136] xref: Atrioventricular:septum xref: EMAPA:37431 {source="MA:th"} xref: FMA:7136 xref: http://www.snomedbrowser.com/Codes/Details/280151006 is_a: UBERON:0002099 ! cardiac septum intersection_of: UBERON:0002099 ! cardiac septum intersection_of: adjacent_to UBERON:0002078 ! right cardiac atrium intersection_of: adjacent_to UBERON:0002084 ! heart left ventricle relationship: adjacent_to UBERON:0002078 ! right cardiac atrium relationship: adjacent_to UBERON:0002084 ! heart left ventricle relationship: develops_from UBERON:0002062 {source="http://www.ncbi.nlm.nih.gov/pubmed/15797462", source="Wikipedia"} ! endocardial cushion [Term] id: UBERON:0005990 name: aortic valve cusp namespace: uberon def: "The three fibrous triangular components and associated flap of the aortic valve" [MP:0010595] subset: pheno_slim synonym: "aortic semilunar valvule" EXACT [FMA:7251] synonym: "aortic valvular cusp" EXACT [FMA:7251] synonym: "cusp of aortic valve" EXACT [FMA:7251] synonym: "semilunar valvule of aortic valve" EXACT [FMA:7251] xref: FMA:7251 xref: http://www.snomedbrowser.com/Codes/Details/362026005 is_a: UBERON:0006009 ! cusp of cardiac valve intersection_of: UBERON:0006009 ! cusp of cardiac valve intersection_of: part_of UBERON:0002137 ! aortic valve relationship: contributes_to_morphology_of UBERON:0002137 ! aortic valve relationship: part_of UBERON:0002137 ! aortic valve [Term] id: UBERON:0005991 name: aortic valve anulus namespace: uberon def: "The fibrous ring of the aortic valve that attaches the cusps of aortic valve to the wall of left ventricle, and which consists of portions of the fibrous scallops of the posterior, right anterior and left anterior cusps" [MP:0010598] subset: pheno_slim synonym: "anulus of aortic valve" EXACT [FMA:9502] synonym: "aortic anulus" EXACT [FMA:9502] synonym: "aortic valvar anulus" EXACT [FMA:9502] synonym: "fibrous ring of aortic valve" EXACT [FMA:9502] xref: EMAPA:37418 {source="MA:th"} xref: FMA:9502 is_a: UBERON:0006008 ! fibrous ring of heart intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: part_of UBERON:0002137 ! aortic valve relationship: contributes_to_morphology_of UBERON:0002137 ! aortic valve relationship: part_of UBERON:0002137 ! aortic valve [Term] id: UBERON:0005992 name: pulmonary valve cusp namespace: uberon def: "The three fibrous triangular components and associated flap of the pulmonary valve" [MP:0010602] subset: pheno_slim synonym: "cusp of pulmonary valve" EXACT [FMA:7248] synonym: "pulmonary semilunar valvule" EXACT [FMA:7248] synonym: "pulmonary valvular cusp" EXACT [FMA:7248] synonym: "semilunar cusp of pulmonary valve" EXACT [FMA:7248] synonym: "semilunar valvule of pulmonary valve" EXACT [FMA:7248] xref: FMA:7248 is_a: UBERON:0006009 ! cusp of cardiac valve intersection_of: UBERON:0006009 ! cusp of cardiac valve intersection_of: part_of UBERON:0002146 ! pulmonary valve relationship: contributes_to_morphology_of UBERON:0002146 ! pulmonary valve relationship: part_of UBERON:0002146 ! pulmonary valve [Term] id: UBERON:0005993 name: pulmonary valve anulus namespace: uberon def: "The fibrous ring of the pulmonary valve that attaches the cusps of pulmonary valve to the wall of right ventricle, and which consists of portions of the fibrous scallops of the anterior, right posterior and left posterior cusps" [MP:0010606] subset: pheno_slim synonym: "anulus of pulmonary valve" EXACT [FMA:9503] synonym: "fibrous ring of pulmonary valve" EXACT [FMA:9503] synonym: "pulmonary anulus" EXACT [FMA:9503] synonym: "pulmonary valvar anulus" EXACT [FMA:9503] xref: EMAPA:37420 {source="MA:th"} xref: FMA:9503 is_a: UBERON:0006008 ! fibrous ring of heart intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: part_of UBERON:0002146 ! pulmonary valve relationship: contributes_to_morphology_of UBERON:0002146 ! pulmonary valve relationship: part_of UBERON:0002146 ! pulmonary valve [Term] id: UBERON:0005994 name: chorda tendineae namespace: uberon def: "The tendinous strands that connect the papillary muscles on the wall of the ventricles to the leaflets of the atrioventricular valves; the chordae tendineae serve to prevent the AV valves from prolapsing back into the atria" [http://en.wikipedia.org/wiki/Chordae_tendineae, MP:0010608] subset: pheno_slim synonym: "chordae tendinea" RELATED PLURAL [FMA:12225] synonym: "chordae tendineae cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Chordae_tendineae] xref: Chordae:tendineae xref: EMAPA:36322 xref: FMA:12225 xref: GAID:564 xref: http://linkedlifedata.com/resource/umls/id/C0008484 xref: http://www.snomedbrowser.com/Codes/Details/279330004 xref: MESH:D002815 xref: NCIT:C32307 xref: UMLS:C0008484 {source="ncithesaurus:Chordae_Tendineae"} is_a: UBERON:0005983 ! heart layer relationship: attaches_to UBERON:0005484 {source="FMA-abduced"} ! tricuspid valve leaflet relationship: contributes_to_morphology_of UBERON:0002133 ! atrioventricular valve relationship: part_of UBERON:0002133 ! atrioventricular valve property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png [Term] id: UBERON:0005995 name: mitral valve anulus namespace: uberon def: "The fibrous ring of the mitral valve that attaches the cusps of mitral valve to the heart, and which consists of portions of the fibrous scallops of the anterior and posterior cusps" [MP:0010613] subset: pheno_slim synonym: "anulus of mitral valve" EXACT [FMA:9498] synonym: "fibrous ring of mitral valve" EXACT [FMA:9498] synonym: "mitral annulus" EXACT [http://en.wikipedia.org/wiki/Mitral_annulus] synonym: "mitral anulus" EXACT [FMA:9498] synonym: "mitral valvar anulus" EXACT [FMA:9498] xref: EMAPA:37419 {source="MA:th"} xref: FMA:9498 xref: Mitral:annulus is_a: UBERON:0006008 ! fibrous ring of heart intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: attaches_to UBERON:0005996 ! mitral valve cusp intersection_of: part_of UBERON:0002135 ! mitral valve relationship: attaches_to UBERON:0005996 ! mitral valve cusp relationship: contributes_to_morphology_of UBERON:0002135 ! mitral valve relationship: part_of UBERON:0002135 ! mitral valve [Term] id: UBERON:0005996 name: mitral valve cusp namespace: uberon def: "The two fibrous components and associated flaps of the mitral valve" [MP:0010614] subset: pheno_slim is_a: UBERON:0006009 ! cusp of cardiac valve intersection_of: UBERON:0006009 ! cusp of cardiac valve intersection_of: part_of UBERON:0002135 ! mitral valve relationship: contributes_to_morphology_of UBERON:0002135 ! mitral valve relationship: part_of UBERON:0002135 ! mitral valve [Term] id: UBERON:0005997 name: tricuspid valve anulus namespace: uberon def: "The fibrous ring of the tricuspid valve that attaches the cusps of tricuspid valve to the heart, and which consists of portions of the fibrous scallops of the anterior cusp (infundibular cusp), the posterior cusp (marginal cusp), and the septal cusp (medial cusp)" [MP:0010621] subset: pheno_slim synonym: "anulus of tricuspid valve" EXACT [FMA:9500] synonym: "fibrous ring of tricuspid valve" EXACT [FMA:9500] synonym: "tricuspid anulus" EXACT [FMA:9500] synonym: "tricuspid valvar anulus" EXACT [FMA:9500] xref: EMAPA:37421 {source="MA:th"} xref: FMA:9500 is_a: UBERON:0006008 ! fibrous ring of heart intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: part_of UBERON:0002134 ! tricuspid valve relationship: contributes_to_morphology_of UBERON:0002134 ! tricuspid valve relationship: part_of UBERON:0002134 ! tricuspid valve [Term] id: UBERON:0005998 name: tricuspid valve cusp namespace: uberon def: "The three fibrous triangular components and associated flaps of the tricuspid valve" [MP:0010622] subset: pheno_slim synonym: "cuspis septalis (valva tricuspidalis)" EXACT LATIN [FMA:7240, FMA:TA] synonym: "cuspis septalis valvae atrioventricularis dextrae" EXACT LATIN [FMA:7240, FMA:TA] synonym: "septal cusp of right atrioventricular valve" EXACT [FMA:7240] synonym: "septal cusp of tricuspid valve" EXACT [FMA:7240] synonym: "septal leaflet of right-sided tricuspid valve" EXACT [BGEE:ANiknejad] synonym: "septal leaflet of tricuspid valve" EXACT [FMA:7240] synonym: "septal tricuspid leaflet" EXACT [FMA:7240] xref: FMA:7240 xref: http://www.snomedbrowser.com/Codes/Details/261417002 is_a: UBERON:0005484 {source="FMA"} ! tricuspid valve leaflet is_a: UBERON:0006009 ! cusp of cardiac valve intersection_of: UBERON:0006009 ! cusp of cardiac valve intersection_of: part_of UBERON:0002134 ! tricuspid valve relationship: contributes_to_morphology_of UBERON:0002134 ! tricuspid valve property_value: IAO:0000116 "check whether we need to separate cusp/leaflet/valve" xsd:string [Term] id: UBERON:0006002 name: vitelline artery namespace: uberon def: "The paired arteries that carry blood to the yolk sac from the dorsal aorta" [http://en.wikipedia.org/wiki/Vitelline_arteries, MP:0010664] comment: Development notes:; the vitelline arteries give rise to the celiac artery, superior mesenteric artery, and inferior mesenteric artery in the adult[MP:0010664] subset: pheno_slim xref: EHDAA2:0002208 xref: EMAPA:16207 xref: Vitelline:arteries is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004365 ! vitelline blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0005805 {notes="ventral branch"} ! dorsal aorta relationship: part_of UBERON:0005805 ! dorsal aorta property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png [Term] id: UBERON:0006008 name: fibrous ring of heart namespace: uberon def: "A ring of ribrous tissue that surrounds the atrioventricular and arterial orifices" [http://en.wikipedia.org/wiki/Fibrous_rings_of_heart, http://orcid.org/0000-0002-6601-2165] synonym: "annulus fibrosus cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Fibrous_rings_of_heart] synonym: "anulus fibrosus cordis" RELATED [http://en.wikipedia.org/wiki/Fibrous_rings_of_heart] synonym: "anulus fibrosus of heart" EXACT [FMA:9497] synonym: "aortic annulus" RELATED [http://en.wikipedia.org/wiki/Fibrous_rings_of_heart] synonym: "atrioventricular ring" RELATED [BTO:0003628] synonym: "coronary tendon" RELATED [BTO:0003628] synonym: "fibrous ring of heart" RELATED [http://en.wikipedia.org/wiki/Fibrous_rings_of_heart] synonym: "Lower's ring" RELATED [BTO:0003628] xref: BTO:0003628 xref: EMAPA:37422 {source="MA:th"} xref: FMA:9497 xref: http://en.wikipedia.org/wiki/Fibrous_rings_of_heart relationship: part_of UBERON:0000948 ! heart property_value: IAO:0000116 "TODO - compare with ZFA atrioventricular ring, part of the conduction system" xsd:string [Term] id: UBERON:0006009 name: cusp of cardiac valve namespace: uberon def: "The part of the heart valves that serves to seal the heart valves when closed. There are three cusps for each valve except for the mitral valve, which has only two (hence its alternate name, 'bicuspid valve'). 'Nodules' are located at the tip of the valve, to form a tighter seal[WP]." [http://en.wikipedia.org/wiki/Cusps_of_heart_valves] synonym: "cardiac valve cusp" EXACT [FMA:7232] synonym: "cardiac valvular cusp" EXACT [FMA:7232] synonym: "cardiac valvule" EXACT [FMA:7232] synonym: "cardial valve cusp" EXACT [] synonym: "semilunar valvule" EXACT [FMA:7232] xref: FMA:7232 xref: http://en.wikipedia.org/wiki/Cusps_of_heart_valves xref: http://linkedlifedata.com/resource/umls/id/C0225923 xref: http://www.snomedbrowser.com/Codes/Details/30822008 xref: NCIT:C33849 xref: UMLS:C0225923 {source="ncithesaurus:Cardiac_Valve_Cusp"} relationship: part_of UBERON:0000946 ! cardial valve property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png [Term] id: UBERON:0006011 name: hyaloid vein namespace: uberon synonym: "hyaloid veins" EXACT PLURAL [ZFA:0005047] xref: EHDAA2:0000791 xref: TAO:0005047 xref: XAO:0004156 xref: ZFA:0005047 is_a: UBERON:0005492 ! hyaloid vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: develops_from UBERON:0011191 {source="EHDAA2"} ! ophthalmic vein property_value: UBPROP:0000001 "Vein internal to the eye. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005047", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0006060 name: conotruncus namespace: uberon def: "The distal portion of Bulbus cordis that forms an outflow channel and gives rise to the proximal conus cordis." [UBERON:gg] subset: pheno_slim synonym: "bulbus cordis rostral half" EXACT [VHOG:0000437] synonym: "cardiac conotruncus" EXACT [] synonym: "rostral half of bulbus cordis" EXACT [EMAPA:16221] xref: EMAPA:16338 xref: VHOG:0000437 relationship: part_of UBERON:0004706 ! bulbus cordis property_value: UBPROP:0000003 "The conus arteriosus is considered a component part of the heart because it has a myocardial wall and lies within the pericardial cavity. It is a feature of the evolutionary primitive state. In amphibians it is called the bulbus cordis, a term that is also used for its equivalent in mammalian embryos. The more derived extant bony fish, like the zebrafish, do not have this cardiac compartment. They have a so-called bulbus arteriosus, which is not enclosed by cardiac muscle, but by elastic tissue and smooth muscle, and therefore is considered to be a specialization of the proximal part of the ventral aorta (256). However, similar to the mammalian condition (306, 326, 339), the bulbus arteriosus in zebrafish embryonic hearts is surrounded by myocardium that disappears with development (134, 135). The bony fish bulbus arteriosus might thus be homologous to the shark conus arteriosus and amphibian/mammalian bulbus cordis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000437", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1152/physrev.00006.2003 Moorman AFM and Christoffels VM, Cardiac Chamber Formation: Development, Genes, and Evolution. Physiol Rev (2003)"} [Term] id: UBERON:0006137 name: proper palmar digital artery namespace: uberon def: "The proper palmar digital arteries travel along the sides of the phalanges (along the contiguous sides of the index, middle, ring, and little fingers), each artery lying just below its corresponding digital nerve. Alternative names for these arteries are: proper volar digital arteries, collateral digital arteries, arteriae digitales palmares propriae, or aa. digitales volares propriae. They anastomose freely in the subcutaneous tissue of the finger tips and by smaller branches near the interphalangeal joints. Each also gives off a couple of dorsal branches which anastomose with the dorsal digital arteries, and supply the soft parts on the back of the second and third phalanges, including the matrix of the fingernail. The proper palmar digital artery for the medial side of the little finger arises directly from the ulnar artery deep to the palmaris brevis muscle, but the rest arise from the common palmar digital arteries." [http://en.wikipedia.org/wiki/Proper_palmar_digital_arteries] synonym: "arteriae digitales palmares propriae" EXACT LATIN [FMA:70804, FMA:TA] synonym: "arteriae digitales palmares propriae" RELATED LATIN [http://en.wikipedia.org/wiki/Proper_palmar_digital_arteries] synonym: "proper palmal digital arteries" EXACT [MA:0001959] synonym: "proper palmar digital arteries" EXACT [MA:0001959] synonym: "proper palmar digital arteries set" EXACT [FMA:70804] synonym: "proper volar digital arteries" RELATED [http://en.wikipedia.org/wiki/Proper_palmar_digital_arteries] synonym: "proper volar digital artery" RELATED [http://en.wikipedia.org/wiki/Proper_palmar_digital_arteries] synonym: "set of proper palmar digital arteries" RELATED [FMA:70804] xref: EMAPA:37218 {source="MA:th"} xref: FMA:70804 xref: http://en.wikipedia.org/wiki/Proper_palmar_digital_arteries xref: http://www.snomedbrowser.com/Codes/Details/91778006 xref: MA:0001959 is_a: UBERON:0006141 ! palmar digital artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg property_value: UBPROP:0000012 "the MA term, even though plural, represents the singular, as it is an isa child of artery" xsd:string {external_ontology="MA"} [Term] id: UBERON:0006138 name: plantar digital artery namespace: uberon xref: FMA:43971 xref: http://www.snomedbrowser.com/Codes/Details/230727008 is_a: UBERON:0004554 {source="FMA"} ! hindlimb digital artery [Term] id: UBERON:0006139 name: plantar digital vein namespace: uberon def: "The plantar digital veins arise from plexuses on the plantar surfaces of the digits, and, after sending intercapitular veins to join the dorsal digital veins, unite to form four metatarsal veins." [http://en.wikipedia.org/wiki/Plantar_digital_veins] synonym: "venae digitales plantares" RELATED LATIN [http://en.wikipedia.org/wiki/Plantar_digital_veins] xref: FMA:44517 xref: http://en.wikipedia.org/wiki/Plantar_digital_veins is_a: UBERON:0004564 ! hindlimb digital vein [Term] id: UBERON:0006140 name: palmar digital vein namespace: uberon def: "The palmar digital veins (or volar digital veins) on each finger are connected to the dorsal digital veins by oblique intercapitular veins. Some sources distinguish between the 'proper palmar digital veins', which are more distal, and the 'common palmar digital veins', which are more proximal." [http://en.wikipedia.org/wiki/Palmar_digital_veins] synonym: "palmar digital veins" EXACT PLURAL [FMA:70895] synonym: "palmar digital veins set" EXACT PLURAL [FMA:70895] synonym: "set of palmar digital veins" RELATED [FMA:70895] synonym: "venae digitales palmares" EXACT LATIN [FMA:70895, FMA:TA] synonym: "venae digitales palmares" RELATED LATIN [http://en.wikipedia.org/wiki/Palmar_digital_veins] synonym: "volar digital veins" RELATED [http://en.wikipedia.org/wiki/Palmar_digital_veins] xref: FMA:70895 xref: http://en.wikipedia.org/wiki/Palmar_digital_veins xref: http://www.snomedbrowser.com/Codes/Details/83229009 is_a: UBERON:0004563 ! forelimb digital vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png [Term] id: UBERON:0006141 name: palmar digital artery namespace: uberon is_a: UBERON:0004553 ! forelimb digital artery [Term] id: UBERON:0006142 name: common plantar digital vein namespace: uberon synonym: "common plantar vein" EXACT [MA:0002134] xref: EMAPA:37221 {source="MA:th"} xref: MA:0002134 is_a: UBERON:0006139 ! plantar digital vein [Term] id: UBERON:0006143 name: proper plantar digital vein namespace: uberon synonym: "proper plantar vein" EXACT [MA:0002138] xref: EMAPA:37230 {source="MA:th"} xref: MA:0002138 is_a: UBERON:0006139 ! plantar digital vein [Term] id: UBERON:0006144 name: medial plantar digital vein namespace: uberon synonym: "medial plantar vein" EXACT [MA:0002172] xref: EMAPA:37171 {source="MA:th"} xref: MA:0002172 is_a: UBERON:0006139 ! plantar digital vein [Term] id: UBERON:0006145 name: dorsal digital artery of pes namespace: uberon def: "The dorsal digital arteries of foot are small arteries which supply the toes." [http://en.wikipedia.org/wiki/Dorsal_digital_arteries_of_foot] synonym: "arteriae digitales dorsales pedis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_digital_arteries_of_foot] synonym: "dorsal digital artery of foot" EXACT [FMA:44660] xref: FMA:44660 xref: http://en.wikipedia.org/wiki/Dorsal_digital_arteries_of_foot xref: http://www.snomedbrowser.com/Codes/Details/230173000 is_a: UBERON:0004554 ! hindlimb digital artery is_a: UBERON:0006163 ! dorsal digital artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png [Term] id: UBERON:0006146 name: dorsal digital artery of manus namespace: uberon def: "Dorsal digital arteries arise from the bifurcation of dorsal metacarpal arteries. They travel along the sides and dorsal aspects of the phalanges of the middle finger, ring finger, and little finger. They communicate with the proper palmar digital arteries. They run with the dorsal digital nerves of ulnar nerve and dorsal digital nerves of radial nerve." [http://en.wikipedia.org/wiki/Dorsal_digital_arteries] synonym: "arteriae digitales dorsales manus" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_digital_arteries] synonym: "dorsal digital artery" BROAD [http://en.wikipedia.org/wiki/Dorsal_digital_arteries] synonym: "dorsal digital artery of hand" EXACT [] xref: http://en.wikipedia.org/wiki/Dorsal_digital_arteries xref: http://www.snomedbrowser.com/Codes/Details/91793005 is_a: UBERON:0004553 ! forelimb digital artery is_a: UBERON:0006163 ! dorsal digital artery [Term] id: UBERON:0006163 name: dorsal digital artery namespace: uberon def: "." [http://en.wikipedia.org/wiki/Dorsal_digital_arteries#] synonym: "arteriae digitales dorsales" EXACT LATIN [FMA:70801, FMA:TA] synonym: "dorsal digital arteries" EXACT [FMA:70801] synonym: "dorsal digital arteries set" EXACT [FMA:70801] synonym: "set of dorsal digital arteries" RELATED [FMA:70801] xref: FMA:70801 xref: http://en.wikipedia.org/wiki/Dorsal_digital_arteries# is_a: UBERON:0004552 ! digital artery property_value: UBPROP:0000012 "Note Wikipedia article refers to manual dorsal digital artery" xsd:string [Term] id: UBERON:0006164 name: forelimb common dorsal digital arteries namespace: uberon synonym: "wing common dorsal digital arteries" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: EMAPA:37209 {source="MA:th"} xref: MA:0001954 is_a: UBERON:0006146 ! dorsal digital artery of manus [Term] id: UBERON:0006165 name: median dorsal digital artery for digit 1 namespace: uberon synonym: "median dorsal digital artery for digit 01" EXACT [MA:0001955] synonym: "median dorsal digital artery for digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:37637 {source="MA:th"} xref: MA:0001955 is_a: UBERON:0006146 ! dorsal digital artery of manus [Term] id: UBERON:0006166 name: lateral dorsal digital artery for digit 5 namespace: uberon synonym: "lateral dorsal digital artery for digit 05" EXACT [MA:0001956] synonym: "lateral dorsal digital artery for digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:37636 {source="MA:th"} xref: MA:0001956 is_a: UBERON:0006146 ! dorsal digital artery of manus [Term] id: UBERON:0006167 name: forelimb proper dorsal digital arteries namespace: uberon synonym: "wing proper dorsal digital arteries" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: EMAPA:37211 {source="MA:th"} xref: MA:0001958 is_a: UBERON:0006146 ! dorsal digital artery of manus [Term] id: UBERON:0006168 name: hindlimb common dorsal digital arteries namespace: uberon xref: EMAPA:37213 {source="MA:th"} xref: MA:0001965 is_a: UBERON:0006145 ! dorsal digital artery of pes [Term] id: UBERON:0006169 name: hindlimb proper dorsal digital arteries namespace: uberon xref: EMAPA:37212 {source="MA:th"} xref: MA:0001967 is_a: UBERON:0006145 ! dorsal digital artery of pes [Term] id: UBERON:0006182 name: mesonephric glomerular mesangium namespace: uberon def: "The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus" [GO:0061247] is_a: UBERON:0002320 ! glomerular mesangium relationship: part_of UBERON:0005326 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mesonephric glomerulus vasculature [Term] id: UBERON:0006183 name: mesonephric glomerular capillary namespace: uberon def: "." [GO:0061249] is_a: UBERON:0004212 ! glomerular capillary [Term] id: UBERON:0006197 name: auricular vein namespace: uberon def: "Any vein serving the ear region" [http://www.thefreedictionary.com/auricular+vein] synonym: "vena auriculares" EXACT LATIN [] synonym: "venae auriculares" EXACT LATIN [] xref: EMAPA:37136 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C2698201 xref: MA:0003054 xref: NCIT:C77673 xref: UMLS:C2698201 {source="ncithesaurus:Auricular_Vein"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001101 ! external jugular vein relationship: tributary_of UBERON:0001101 {source="cjm"} ! external jugular vein property_value: UBPROP:0000008 "In humans this refers to either the anterior or posterior auricular vein, passing in front of or behind the ear. This class also groups other auricular veins, including the greater, ventral, central auricular nerves. These may exhibit different branching structures. In the pig, the external jugular branches to the maxillary to the caudal auricular to the middle auricular, then onto various unique patterns" xsd:string [Term] id: UBERON:0006198 name: dorsal intercostal artery namespace: uberon def: "The highest intercostal artery (supreme intercostal artery, superior intercostal artery) is an artery in the human body that usually gives rise to the first and second posterior intercostal arteries, which supply blood to their corresponding intercostal space. It usually arises from the costocervical trunk, which is a branch of the subclavian artery." [http://en.wikipedia.org/wiki/Highest_intercostal_artery] comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "arteria intercostalis suprema" RELATED LATIN [http://en.wikipedia.org/wiki/Highest_intercostal_artery] synonym: "dorsal branch of superior intercostal artery" RELATED [http://www.mondofacto.com/facts/dictionary?dorsal+branch+of+the+superior+intercostal+artery] synonym: "superior intercostal artery" EXACT [FMA:76998, http://en.wikipedia.org/wiki/Highest_intercostal_artery] synonym: "supreme intercostal artery" EXACT [FMA:76998, http://en.wikipedia.org/wiki/Highest_intercostal_artery] xref: EMAPA:37078 {source="MA:th"} xref: FMA:76998 xref: http://en.wikipedia.org/wiki/Highest_intercostal_artery xref: http://www.snomedbrowser.com/Codes/Details/198427009 xref: MA:0001943 is_a: UBERON:0005612 ! intercostal artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png [Term] id: UBERON:0006199 name: posterior auricular vein namespace: uberon def: "The posterior auricular vein begins upon the side of the head, in a plexus which communicates with the tributaries of the occipital vein and superficial temporal veins. It descends behind the auricula, and joins the posterior division of the posterior facial vein to form the external jugular. It receive the stylomastoid vein, and some tributaries from the cranial surface of the auricula." [http://en.wikipedia.org/wiki/Posterior_auricular_vein] synonym: "posterior auricular vein" EXACT [FMA:50851] synonym: "venae auricularis posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_auricular_vein] xref: EMAPA:37138 {source="MA:th"} xref: FMA:50851 xref: http://en.wikipedia.org/wiki/Posterior_auricular_vein xref: http://linkedlifedata.com/resource/umls/id/C0226544 xref: http://www.snomedbrowser.com/Codes/Details/150188002 xref: MA:0002090 xref: NCIT:C33349 xref: UMLS:C0226544 {source="ncithesaurus:Posterior_Auricular_Vein"} is_a: UBERON:0006197 ! auricular vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png property_value: UBPROP:0000012 "check placement of MA class" xsd:string [Term] id: UBERON:0006200 name: caudal humeral circumflex vein namespace: uberon comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "posterior circumflex humeral vein" EXACT [FMA:71216] synonym: "posterior humeral circumflex vein" EXACT [FMA:71216] synonym: "vena circumflexa humeri posterior" EXACT LATIN [FMA:71216, FMA:TA] xref: EMAPA:37472 {source="MA:th"} xref: FMA:71216 xref: MA:0002091 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0000985 ! axillary vein relationship: part_of UBERON:0001587 ! subclavian vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0006207 name: aortico-pulmonary spiral septum namespace: uberon alt_id: UBERON:0005999 def: "The spiral septum that separates the truncus arteriosus into a ventral pulmonary trunk and the dorsal aorta[MP]. The aorticopulmonary septum is developmentally formed from neural crest, specifically the cardiac neural crest, and actively separates the aorta and pulmonary arteries and fuses with the interventricular septum within the heart during development. The actual mechanism of septation of the outflow tract is poorly understood, but is recognized as a dynamic process with contributions from contractile, hemodynamic, and extracellular matrix interactions." [http://en.wikipedia.org/wiki/Aorticopulmonary_septum, MP:0010650] subset: emapa_ehdaa2 subset: pheno_slim synonym: "aortic septum" RELATED [http://en.wikipedia.org/wiki/Aorticopulmonary_septum] synonym: "aortico-pulmonary septum" EXACT [http://en.wikipedia.org/wiki/Aorticopulmonary_septum] synonym: "aorticopulmonary septum" EXACT [http://en.wikipedia.org/wiki/Aorticopulmonary_septum] synonym: "septum aorticopulmonale" EXACT LATIN [http://en.wikipedia.org/wiki/Aorticopulmonary_septum] synonym: "spiral septum" RELATED [http://en.wikipedia.org/wiki/Aorticopulmonary_septum] xref: Aorticopulmonary:septum xref: CALOHA:TS-2409 xref: EHDAA2:0000136 xref: EHDAA:2592 xref: EMAPA:16827 xref: VHOG:0000502 is_a: UBERON:0004142 ! outflow tract septum intersection_of: UBERON:0002099 ! cardiac septum intersection_of: adjacent_to UBERON:0002333 ! pulmonary trunk intersection_of: adjacent_to UBERON:0005805 ! dorsal aorta relationship: adjacent_to UBERON:0002333 ! pulmonary trunk relationship: adjacent_to UBERON:0005805 ! dorsal aorta property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray470.png [Term] id: UBERON:0006212 name: bulbo-ventricular groove namespace: uberon def: "depression at base of developing heart that contains a population of cardiomyocytes that migrate and contribute to the interventricular septum" [BGEE:ANiknejad, http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/17064678] subset: emapa_ehdaa2 synonym: "bulbo-ventricular sulcus" EXACT [EMAPA:16693] synonym: "bulboventricular groove" EXACT [VHOG:0001405] synonym: "ependymal groove" EXACT [EMAPA:16693] synonym: "ependymal sulcus" EXACT [EMAPA:16693] synonym: "interventricular sulcus" RELATED [EHDAA2:0000195] xref: EHDAA2:0000195 xref: EHDAA:766 xref: EMAPA:16693 xref: VHOG:0001405 relationship: part_of UBERON:0000948 ! heart property_value: seeAlso https://github.com/obophenotype/uberon/issues/347 [Term] id: UBERON:0006218 name: common atrial chamber namespace: uberon subset: emapa_ehdaa2 xref: EHDAA:1267 xref: EMAPA:16342 xref: RETIRED_EHDAA2:0000268 relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0006252 name: intersubcardinal venous anastomosis namespace: uberon subset: emapa_ehdaa2 xref: EHDAA2:0000883 xref: EHDAA:3452 xref: EMAPA:16828 relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0006282 name: primary head vein namespace: uberon comment: early vein that gives rise to various sinuses subset: emapa_ehdaa2 xref: EHDAA2:0001498 xref: EHDAA:818 xref: EMAPA:16242 is_a: UBERON:0009141 ! craniocervical region vein [Term] id: UBERON:0006296 name: subcardinal vein namespace: uberon def: "A vein in the mammalian embryo or the adult of some lower vertebrates that is located on each side of the abdominal region ventromedial to the mesonephros and that in mammals participates in the formation of the inferior vena cava and the renal vein" [http://www.merriam-webster.com/medical/subcardinal%20vein, ISBN:0073040584] comment: TBD: part of cardinal system? xref: EHDAA:2631 xref: EMAPA:16829 xref: http://linkedlifedata.com/resource/umls/id/C0231088 xref: http://www.snomedbrowser.com/Codes/Details/308830006 xref: NCIT:C34307 xref: UMLS:C0231088 {source="ncithesaurus:Subcardinal_Vein"} xref: VHOG:0001336 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006300 name: supracardinal vein namespace: uberon def: "Either of two veins in the mammalian embryo and various adult lower vertebrate forms located in the thoracic and abdominal regions dorsolateral to and on either side of the descending aorta and giving rise to the azygos and hemiazygos veins and a part of the inferior vena cava[MW]. These veins drain the body wall via the segmental intercostal veins, thus taking over the function of the posterior cardinals[ISBN]" [http://www.merriam-webster.com/medical/supracardinal%20vein, ISBN:0443065837] subset: emapa_ehdaa2 xref: EHDAA2:0001964 xref: EHDAA:7492 xref: EMAPA:16830 xref: http://linkedlifedata.com/resource/umls/id/C0231090 xref: http://www.snomedbrowser.com/Codes/Details/308829001 xref: NCIT:C34308 xref: UMLS:C0231090 {source="ncithesaurus:Supracardinal_Vein"} is_a: UBERON:0013140 ! systemic vein [Term] id: UBERON:0006305 name: tunica vasculosa lentis namespace: uberon def: "An extensive capillary network, spreading over the posterior and lateral surfaces of the lens of the eye. It disappears shortly after birth." [http://en.wikipedia.org/wiki/Tunica_vasculosa_lentis] subset: emapa_ehdaa2 xref: EHDAA2:0002097 xref: EHDAA:5705 xref: EMAPA:18235 xref: FMA:321625 xref: http://en.wikipedia.org/wiki/Tunica_vasculosa_lentis xref: VHOG:0000978 relationship: part_of UBERON:0005607 ! hyaloid vascular plexus property_value: UBPROP:0000003 "Soon after it forms, the mammalian lens becomes invested with a network of capillaries. (...) The capillary network on the posterior of the lens is the tunica vasculosa lentis (TVL).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000978", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1016/j.semcdb.2007.08.014 Beebe DC, Maintening transparency: A review of the developmental physiology and pathophysiology of two avascular tissues. Seminars in Cell and Developmental Biology (2008) Fig.1"} [Term] id: UBERON:0006309 name: venous vitelline plexus namespace: uberon subset: emapa_ehdaa2 xref: EHDAA:1945 xref: EMAPA:17020 xref: RETIRED_EHDAA2:0002172 relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0006310 name: vitelline venous plexus namespace: uberon subset: emapa_ehdaa2 xref: EHDAA2:0002210 xref: EHDAA:1945 xref: EMAPA:17020 relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0006338 name: lateral ventricle choroid plexus stroma namespace: uberon def: "A choroid plexus stroma that is part of a lateral ventricle." [OBOL:automatic] xref: MA:0000963 is_a: UBERON:0005206 ! choroid plexus stroma relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle property_value: IAO:0000116 "definitions should be fixed to use generic stroma class" xsd:string [Term] id: UBERON:0006339 name: third ventricle choroid plexus stroma namespace: uberon def: "A choroid plexus stroma that is part of a third ventricle." [OBOL:automatic] xref: EMAPA:37056 {source="MA:th"} xref: MA:0000881 is_a: UBERON:0005206 ! choroid plexus stroma relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle [Term] id: UBERON:0006340 name: fourth ventricle choroid plexus stroma namespace: uberon def: "A choroid plexus stroma that is part of a fourth ventricle." [OBOL:automatic] xref: MA:0000985 is_a: UBERON:0005206 ! choroid plexus stroma relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle [Term] id: UBERON:0006341 name: outer renal medulla peritubular capillary namespace: uberon def: "A peritubular capillary that is part of a outer medulla of kidney." [OBOL:automatic] synonym: "kidney outer medulla peritubular capillary" EXACT [MA:0002589] xref: EMAPA:35461 xref: MA:0002589 is_a: UBERON:0005272 ! peritubular capillary [Term] id: UBERON:0006345 name: stapedial artery namespace: uberon def: "A small artery that passes through the ring of the stapes; while the stapedial artery is a temporary artery thought to disappear at late embryonic stage in humans, the mouse stapedial artery is complete by E13 and persists into adulthood[MP]." [MP:0004665] subset: pheno_slim synonym: "stapedial" RELATED [EHDAA2:0001908] synonym: "stapedial artery temporary" EXACT [EHDAA2:0001908] xref: EHDAA2:0001908 xref: EMAPA:17313 xref: FMA:79390 xref: http://en.wikipedia.org/wiki/Stapedial_branch_of_posterior_auricular_artery xref: http://linkedlifedata.com/resource/umls/id/C1284048 xref: http://www.snomedbrowser.com/Codes/Details/361518009 xref: MA:0002044 xref: NCIT:C34304 xref: UMLS:C1284048 {source="ncithesaurus:Stapedial_Artery"} is_a: UBERON:0001637 {source="EHDAA2"} ! artery is_a: UBERON:0003496 ! head blood vessel relationship: develops_from UBERON:0003119 {source="EHDAA2"} ! pharyngeal arch artery 2 [Term] id: UBERON:0006347 name: communicating artery namespace: uberon def: "An artery that connects two larger arteries." [ncithesaurus:Communicating_Artery] comment: Grouping for anterior and posterior xref: EMAPA:18598 xref: http://linkedlifedata.com/resource/umls/id/C1707451 xref: MA:0001938 xref: NCIT:C52851 xref: UMLS:C1707451 {source="ncithesaurus:Communicating_Artery"} is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: connects UBERON:0001637 {minCardinality="2", maxCardinality="2"} ! artery relationship: connects UBERON:0001637 ! artery [Term] id: UBERON:0006349 name: epigastric artery namespace: uberon def: "An external iliac artery branch that supplies blood to the anterior abdominal wall." [ncithesaurus:Epigastric_Artery] xref: EMAPA:18750 xref: Epigastric:artery xref: http://linkedlifedata.com/resource/umls/id/C0282640 xref: http://www.snomedbrowser.com/Codes/Details/261400009 xref: MA:0001948 xref: MESH:D019074 xref: NCIT:C52860 xref: UMLS:C0282640 {source="ncithesaurus:Epigastric_Artery"} is_a: UBERON:0001637 ! artery [Term] id: UBERON:0006351 name: principal vein of forelimb namespace: uberon def: "A prinicipal vein of limb that is part of a forelimb." [OBOL:automatic] xref: EMAPA:17018 xref: MA:0002199 is_a: UBERON:0003515 ! forelimb blood vessel is_a: UBERON:0006443 ! prinicipal vein of limb [Term] id: UBERON:0006353 name: principal vein of hindlimb namespace: uberon def: "A prinicipal vein of limb that is part of a hindlimb." [OBOL:automatic] xref: EMAPA:17019 xref: MA:0002200 is_a: UBERON:0003516 ! hindlimb blood vessel is_a: UBERON:0006443 ! prinicipal vein of limb [Term] id: UBERON:0006355 name: superior vesical vein namespace: uberon xref: EMAPA:18646 xref: MA:0002227 is_a: UBERON:0002460 {is_inferred="true", source="MA"} ! vesical vein property_value: IAO:0000116 "inferred from artery" xsd:string [Term] id: UBERON:0006356 name: epigastric vein namespace: uberon def: "A vein that drains the anterior abdominal wall." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:18759 xref: Epigastric:veins xref: http://linkedlifedata.com/resource/umls/id/C1707930 xref: MA:0002114 xref: NCIT:C53045 xref: UMLS:C1707930 {source="ncithesaurus:Epigastric_Vein"} is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006358 name: vasa hyaloidea propria namespace: uberon def: "The vasa hyaloidea propria and tunica vasculosa lentis are small branches of the hyaloid artery which fill the primary vitreous" [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:18236 xref: FMA:312395 xref: MA:0001285 relationship: part_of UBERON:0005607 {source="EMAPA"} ! hyaloid vascular plexus [Term] id: UBERON:0006374 name: part of afferent arteriole forming the juxtaglomerular complex namespace: uberon synonym: "part of afferent arteriole forming juxtaglomerular complex" EXACT [MA:0002580] synonym: "renin-producing cells" RELATED [MA:0002580] xref: EMAPA:28269 xref: MA:0002580 relationship: part_of UBERON:0004639 ! renal afferent arteriole [Term] id: UBERON:0006436 name: principal artery to forelimb namespace: uberon synonym: "7th cervical intersegmental artery" RELATED [EMAPA:16811] synonym: "7th cervical intersomitic artery" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "axial artery of forelimb" RELATED [EMAPA:16811] xref: EMAPA:16811 xref: http://www.snomedbrowser.com/Codes/Details/338130007 xref: MA:0002024 is_a: UBERON:0007718 ! principal artery to limb [Term] id: UBERON:0006438 name: principal artery to hindlimb namespace: uberon synonym: "5th lumbar intersegmental artery" RELATED [EMAPA:16812] synonym: "axial artery of hindlimb" RELATED [EMAPA:16812] xref: EMAPA:16812 xref: http://www.snomedbrowser.com/Codes/Details/361443000 xref: MA:0002025 is_a: UBERON:0007718 ! principal artery to limb [Term] id: UBERON:0006443 name: prinicipal vein of limb namespace: uberon is_a: UBERON:0001638 ! vein is_a: UBERON:0003514 ! limb blood vessel [Term] id: UBERON:0006544 name: kidney vasculature namespace: uberon def: "A vasculature that is part of a kidney." [OBOL:automatic] subset: vertebrate_core xref: EMAPA:28457 xref: TAO:0005305 xref: ZFA:0005305 is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0006558 name: lymphatic part of lymphoid system namespace: uberon def: "An organ system subdivision that is a network of vessels capable of removing accumulating protein and fluid from the interstitial space and returning it to the vascular space. In some species, this network is connected to the immune system via lymph nodes and lymphocyte-producing organs, with the whole being the lymphoid system." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim synonym: "lymphatic system" EXACT [FMA:7162, MA:0002435] synonym: "lymphatic tree system" EXACT [FMA:7162] synonym: "lymporeticular system" RELATED [VHOG:0001761] xref: AAO:0010522 xref: CALOHA:TS-2024 xref: EFO:0000870 xref: EMAPA:18248 xref: FMA:7162 xref: http://www.snomedbrowser.com/Codes/Details/362597000 xref: Lymphatic:system xref: MA:0002961 xref: MESH:D008208 xref: VHOG:0001761 relationship: part_of UBERON:0001009 {source="AAO"} ! circulatory system property_value: IAO:0000116 "consider merging with lymph vasculature" xsd:string property_value: UBPROP:0000001 "Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010522", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000007 "lymporeticular" xsd:string property_value: UBPROP:0000012 "in FMA this is part of the cardiovascular system, but here we treat the CV system as a separate component of the circulatory system from the lymphatic system" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0006563 name: tunica media of pulmonary trunk namespace: uberon def: "Tunica media of artery which is continuous with the myocardium of right ventricle.[FMA]" [FMA:85030, FMA:FMA] xref: FMA:85030 is_a: UBERON:0007239 ! tunica media of artery intersection_of: UBERON:0002522 ! tunica media intersection_of: part_of UBERON:0002333 ! pulmonary trunk relationship: part_of UBERON:0002333 ! pulmonary trunk [Term] id: UBERON:0006564 name: superficial palmar arch namespace: uberon def: "The superficial palmar arch is formed predominantly by the ulnar artery, with a contribution from the superficial palmar branch of the radial artery. However, in some individuals the contribution from the radial artery might be absent, and instead anastomoses with either the princeps pollicis artery, the radialis indicis artery, or the median artery, the former two of which are branches from the radial artery. Alternative names for this arterial arch are: superficial volar arch, superficial ulnar arch, arcus palmaris superficialis, or arcus volaris superficialis. The arch passes across the palm in a curve with its convexity downward. If one were to fully extend the thumb, the superficial palmar arch would lie approximately at the level of a line drawn from the distal border of the thumb across the palm. The superficial palmar arch is more distal than the deep palmar arch. Three common palmar digital arteries arise from the arch, proceeding down on the second, third, and fourth lumbrical muscles, respectively. They each receive a contribution from a palmar metacarpal artery. Near the level of the metacarpophalangeal joints, each common palmar digital artery divides into two proper palmar digital arteries." [http://en.wikipedia.org/wiki/Superficial_palmar_arch] synonym: "arcus palmaris superficialis" EXACT LATIN [FMA:22834, FMA:TA] synonym: "superficial palmar arch" EXACT [FMA:22834] synonym: "superficial palmar arterial arch" EXACT [FMA:22834] xref: EMAPA:37755 {source="MA:th"} xref: FMA:22834 xref: http://en.wikipedia.org/wiki/Superficial_palmar_arch xref: http://linkedlifedata.com/resource/umls/id/C0226433 xref: http://www.snomedbrowser.com/Codes/Details/362051006 xref: MA:0002127 xref: NCIT:C33665 xref: UMLS:C0226433 {source="ncithesaurus:Superficial_Palmar_Arch"} is_a: UBERON:0004563 {source="MA"} ! forelimb digital vein [Term] id: UBERON:0006566 name: left ventricle myocardium namespace: uberon def: "A myocardium that is part of a left ventricle of a heart." [http://orcid.org/0000-0002-6601-2165] synonym: "left ventricular myocardium" EXACT [FMA:9558] synonym: "myocardium of left ventricle" EXACT [FMA:9558] xref: EMAPA:17339 xref: FMA:9558 xref: http://www.snomedbrowser.com/Codes/Details/362021000 xref: MA:0002983 is_a: UBERON:0001083 ! myocardium of ventricle intersection_of: UBERON:0001083 ! myocardium of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: continuous_with UBERON:0003618 ! aorta tunica media relationship: part_of UBERON:0002084 ! heart left ventricle property_value: UBPROP:0000001 "Myocardium of ventricle which is continuous with the tunica media of aorta." xsd:string {source="FMA:9558"} [Term] id: UBERON:0006567 name: right ventricle myocardium namespace: uberon def: "A myocardium that is part of a right ventricle of a heart." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "myocardium of right ventricle" EXACT [FMA:9535] synonym: "right ventricular myocardium" EXACT [FMA:9535] xref: EMAPA:17342 xref: FMA:9535 xref: http://www.snomedbrowser.com/Codes/Details/362020004 xref: MA:0002984 is_a: UBERON:0001083 ! myocardium of ventricle intersection_of: UBERON:0001083 ! myocardium of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: continuous_with UBERON:0006563 ! tunica media of pulmonary trunk relationship: part_of UBERON:0002080 ! heart right ventricle property_value: UBPROP:0000001 "Myocardium of ventricle which is continuous with the tunica media of the pulmonary trunk." xsd:string {source="FMA:9535"} [Term] id: UBERON:0006570 name: trabecula carnea of right ventricle namespace: uberon def: "A trabecula carnea that is part of a heart right ventricle." [OBOL:automatic] synonym: "trabeculae carneae (ventriculus dexter)" EXACT [FMA:7270] xref: FMA:7270 xref: http://www.snomedbrowser.com/Codes/Details/192373001 is_a: UBERON:0002511 ! trabecula carnea intersection_of: UBERON:0002511 ! trabecula carnea intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0006571 name: trabecula carnea of left ventricle namespace: uberon def: "A trabecula carnea that is part of a heart left ventricle." [OBOL:automatic] synonym: "trabeculae carneae (ventriculus sinister)" EXACT [FMA:7271] xref: FMA:7271 xref: http://www.snomedbrowser.com/Codes/Details/190344008 is_a: UBERON:0002511 ! trabecula carnea intersection_of: UBERON:0002511 ! trabecula carnea intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0006615 name: venous sinus namespace: uberon def: "A large vein or channel for the circulation of venous blood" [http://medical-dictionary.thefreedictionary.com/venous+sinus] subset: pheno_slim synonym: "blood sinus" RELATED [ZFA:0007072] xref: http://linkedlifedata.com/resource/umls/id/C0226504 xref: http://www.snomedbrowser.com/Codes/Details/341586007 xref: MA:0000070 xref: NCIT:C12877 xref: UMLS:C0226504 {source="ncithesaurus:Venous_Sinus"} xref: ZFA:0007072 is_a: UBERON:0003920 ! venous blood vessel property_value: IAO:0000116 "check if it is valid to group ZFA class here." xsd:string [Term] id: UBERON:0006618 name: atrium auricular region namespace: uberon def: "A small conical pouch projections located on the upper anterior portion of each atrium of the heart." [http://en.wikipedia.org/wiki/Auricular_appendage, MP:0010489] subset: pheno_slim synonym: "atrial appendage" EXACT [] synonym: "atrial auricle" EXACT [MP:0010489] synonym: "atrium appendage" EXACT [] synonym: "auricle of atrium" EXACT [FMA:77110] synonym: "auricle of heart" EXACT [FMA:77110] synonym: "auricula (cor)" EXACT [FMA:77110] synonym: "auricula atrii" EXACT LATIN [FMA:77110, FMA:TA] synonym: "auricular appendage" EXACT [] synonym: "cardiac auricle" EXACT [FMA:77110] synonym: "heart atrial appendage" EXACT [] synonym: "heart atrium auriclular region" EXACT [MP:0010489] xref: Auricular:appendage xref: BTO:0002485 xref: EMAPA:36055 xref: FMA:77110 xref: http://www.snomedbrowser.com/Codes/Details/305223006 xref: MA:0002955 relationship: contributes_to_morphology_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0006630 name: left atrium auricular region namespace: uberon def: "A muscular pouch connected to the left atrium of the heart" [http://en.wikipedia.org/wiki/Left_atrial_appendage] subset: pheno_slim synonym: "auricula sinistra" EXACT [http://en.wikipedia.org/wiki/Right_atrial_appendage] synonym: "auricula sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Left_atrial_appendage] synonym: "heart left atrial appendage" EXACT [] synonym: "left atrial appendage" RELATED [MA:0001869] synonym: "left atrium appendage" RELATED [] synonym: "left auricle" EXACT [FMA:7219] synonym: "left auricula" EXACT [http://en.wikipedia.org/wiki/Right_atrial_appendage] synonym: "left auricular appendage" RELATED [FMA:7219] synonym: "left auricular appendix" EXACT [http://en.wikipedia.org/wiki/Right_atrial_appendage] synonym: "left auricular region" BROAD [EMAPA:16816] xref: EHDAA2:0000276 xref: EHDAA:5343 xref: EMAPA:16816 xref: EMAPA:17316 xref: FMA:7219 xref: http://en.wikipedia.org/wiki/Left_atrial_appendage xref: http://www.snomedbrowser.com/Codes/Details/277930000 xref: MA:0001869 xref: VHOG:0001229 is_a: UBERON:0006618 ! atrium auricular region intersection_of: UBERON:0006618 ! atrium auricular region intersection_of: part_of UBERON:0002079 ! left cardiac atrium relationship: part_of UBERON:0002079 ! left cardiac atrium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray494.png [Term] id: UBERON:0006631 name: right atrium auricular region namespace: uberon def: "A small conical muscular pouch attached to the right atrium of the heart." [http://en.wikipedia.org/wiki/Right_atrial_appendage] subset: pheno_slim synonym: "auricula dextra" EXACT [http://en.wikipedia.org/wiki/Right_atrial_appendage] synonym: "heart right atrial appendage" RELATED [] synonym: "right atrial appendage" RELATED [MA:0001870] synonym: "right atrium appendage" RELATED [] synonym: "right auricle" EXACT [FMA:7218] synonym: "right auricula" EXACT [http://en.wikipedia.org/wiki/Right_atrial_appendage] synonym: "right auricular appendage" RELATED [FMA:7218] synonym: "right auricular region" BROAD [EMAPA:16824] synonym: "right auriculur appendix" EXACT [http://en.wikipedia.org/wiki/Right_atrial_appendage] xref: EHDAA2:0000291 xref: EHDAA:5352 xref: EMAPA:16824 xref: EMAPA:17322 xref: FMA:7218 xref: http://en.wikipedia.org/wiki/Right_atrial_appendage xref: http://www.snomedbrowser.com/Codes/Details/277713005 xref: MA:0001870 xref: VHOG:0001232 is_a: UBERON:0006618 ! atrium auricular region intersection_of: UBERON:0006618 ! atrium auricular region intersection_of: part_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium [Term] id: UBERON:0006632 name: musculo-phrenic artery namespace: uberon def: "An artery with its origin in the lateral terminal branch of the internal thoracic artery, with distribution to the diaphragm and the intercostal muscles, and with anastomoses to the branches of the pericardiacophrenic and inferior phrenic." [http://medical-dictionary.thefreedictionary.com/musculophrenic+artery] synonym: "musculophrenic artery" EXACT [FMA:10645] xref: EMAPA:19215 xref: FMA:10645 xref: http://www.snomedbrowser.com/Codes/Details/244242003 xref: Musculophrenic:artery is_a: UBERON:0002057 ! phrenic artery relationship: branching_part_of UBERON:0002456 ! internal thoracic artery relationship: part_of UBERON:0002456 ! internal thoracic artery [Term] id: UBERON:0006634 name: lingual vein namespace: uberon def: "The lingual veins begin on the dorsum, sides, and under surface of the tongue, and, passing backward along the course of the lingual artery, end in the internal jugular vein. The vena comitans of the hypoglossal nerve (ranine vein), a branch of considerable size, begins below the tip of the tongue, and may join the lingual; generally, however, it passes backward on the Hyoglossus, and joins the common facial." [http://en.wikipedia.org/wiki/Lingual_veins] synonym: "deep lingual veins" RELATED [http://en.wikipedia.org/wiki/Lingual_veins] synonym: "lingual vein" RELATED [http://en.wikipedia.org/wiki/Lingual_veins] synonym: "ranine" RELATED [http://en.wikipedia.org/wiki/Lingual_veins] synonym: "ranine vein" RELATED [http://en.wikipedia.org/wiki/Lingual_veins] synonym: "vena lingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Lingual_veins] xref: AAO:0010514 xref: EMAPA:19312 xref: FMA:14326 xref: http://www.snomedbrowser.com/Codes/Details/181375007 xref: Lingual:veins is_a: UBERON:0001638 ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png property_value: UBPROP:0000001 "Vein which collects blood from the tongue and drains into the external jugular vein.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010514", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0006636 name: lumbar artery namespace: uberon def: "The lumbar arteries are in series with the intercostals. They are usually four in number on either side, and arise from the back of the aorta, opposite the bodies of the upper four lumbar vertebrC&. A fifth pair, small in size, is occasionally present: they arise from the middle sacral artery. They run lateralward and backward on the bodies of the lumbar vertebrC&, behind the sympathetic trunk, to the intervals between the adjacent transverse processes, and are then continued into the abdominal wall. The arteries of the right side pass behind the inferior vena cava, and the upper two on each side run behind the corresponding crus of the diaphragm. The arteries of both sides pass beneath the tendinous arches which give origin to the Psoas major, and are then continued behind this muscle and the lumbar plexus. They now cross the Quadratus lumborum, the upper three arteries running behind, the last usually in front of the muscle. At the lateral border of the Quadratus lumborum they pierce the posterior aponeurosis of the Transversus abdominis and are carried forward between this muscle and the Obliquus internus. They anastomose with the lower intercostal, the subcostal, the iliolumbar, the deep iliac circumflex, and the inferior epigastric arteries." [http://en.wikipedia.org/wiki/Lumbar_arteries] synonym: "arteria lumbalis" RELATED [http://en.wikipedia.org/wiki/Lumbar_arteries] synonym: "arteriae lumbales" RELATED LATIN [http://en.wikipedia.org/wiki/Lumbar_arteries] synonym: "lumbar arterial tree" EXACT [FMA:14735] synonym: "lumbar artery" RELATED [http://en.wikipedia.org/wiki/Lumbar_arteries] xref: EMAPA:19096 xref: FMA:14735 xref: http://linkedlifedata.com/resource/umls/id/C0226408 xref: http://www.snomedbrowser.com/Codes/Details/244285007 xref: Lumbar:arteries xref: NCIT:C33013 xref: UMLS:C0226408 {source="ncithesaurus:Lumbar_Artery"} is_a: UBERON:0012254 ! abdominal aorta artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png [Term] id: UBERON:0006637 name: celiac trunk namespace: uberon synonym: "coeliac trunk" EXACT [EHDAA2:0004519] synonym: "coeliac trunk" EXACT [FMA:14812] synonym: "coeliaco-mesenteric trunk" EXACT [FMA:14812] synonym: "Haller's tripus" EXACT [FMA:14812] synonym: "truncus coeliacus" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] xref: EHDAA2:0004519 xref: EMAPA:19212 xref: FMA:14812 xref: galen:CeliacTrunk relationship: part_of UBERON:0001640 ! celiac artery [Term] id: UBERON:0006656 name: deep dorsal vein of penis namespace: uberon def: "The deep dorsal vein of the penis lies beneath the deep fascia of the penis; it receives the blood from the glans penis and corpora cavernosa penis and courses backward in the middle line between the dorsal arteries; near the root of the penis it passes between the two parts of the suspensory ligament and then through an aperture between the arcuate pubic ligament and the transverse ligament of the pelvis, and divides into two branches, which enter the pudendal plexus. The deep vein also communicates below the symphysis pubis with the internal pudendal vein." [http://en.wikipedia.org/wiki/Deep_dorsal_vein_of_the_penis] xref: EMAPA:19219 xref: FMA:21354 xref: http://en.wikipedia.org/wiki/Deep_dorsal_vein_of_the_penis xref: http://www.snomedbrowser.com/Codes/Details/55433007 is_a: UBERON:0035552 ! deep vein relationship: part_of UBERON:0001317 ! internal iliac vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0006662 name: musculo-phrenic vein namespace: uberon def: "Any of the veins that accompany the musculophrenic artery and drain blood from the upper abdominal wall, the lower intercostal spaces, and the diaphragm." [http://medical-dictionary.thefreedictionary.com/musculophrenic+vein] synonym: "musculophrenic vein" EXACT [FMA:4732] xref: EMAPA:19222 xref: FMA:4732 xref: http://www.snomedbrowser.com/Codes/Details/1895000 is_a: UBERON:0005194 ! thoracic vein is_a: UBERON:0012193 ! phrenic vein relationship: part_of UBERON:0001589 ! internal thoracic vein relationship: tributary_of UBERON:0001589 ! internal thoracic vein [Term] id: UBERON:0006663 name: hemiazygos vein namespace: uberon def: "The hemiazygos vein (vena azygos minor inferior) is a vein running superiorly in the lower thoracic region, just to the left side of the vertebral column." [http://en.wikipedia.org/wiki/Hemiazygos_vein] synonym: "hemi-azygos vein" EXACT [FMA:4944] synonym: "hemiazygos" RELATED [http://en.wikipedia.org/wiki/Hemiazygos_vein] synonym: "hemiazygos veins" RELATED [http://en.wikipedia.org/wiki/Hemiazygos_vein] synonym: "hemiazygous vein" EXACT [FMA:4944] synonym: "hemiazygous vein" RELATED [http://en.wikipedia.org/wiki/Hemiazygos_vein] synonym: "inferior hemi-azygos vein" EXACT [FMA:4944] synonym: "vena hemiazygos" EXACT LATIN [http://en.wikipedia.org/wiki/Hemiazygos_vein] xref: EHDAA2:0004534 xref: EMAPA:18251 xref: FMA:4944 xref: Hemiazygos:vein xref: http://www.snomedbrowser.com/Codes/Details/244408009 is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0008267 {source="ISBN:0443065837"} ! left supracardinal vein relationship: part_of UBERON:0001594 ! azygos vein relationship: tributary_of UBERON:0001594 {source="FMA/obol"} ! azygos vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray480.png property_value: UBPROP:0000008 "The major anatomic variation between the pig and other mammalian species is the presence of the large left azygos vein, which enters the coronary sinus (Fig. 1). In other mammals, hemiazygos vein enters the pre- cava." xsd:string [Term] id: UBERON:0006664 name: greater palatine artery namespace: uberon def: "The greater palatine artery is a terminal branch of the maxillary artery. It branches off of the maxillary artery in the pterygopalatine fossa and descends through the greater palatine foramen along with the greater palatine nerve and supplies the hard palate. It also anastomosis through the incisive canal with the sphenopalatine artery to supply the nasal cavity." [http://en.wikipedia.org/wiki/Greater_palatine_artery] synonym: "arteria palatina major" RELATED LATIN [http://en.wikipedia.org/wiki/Greater_palatine_artery] synonym: "major palatine artery" EXACT [MA:0001993] xref: EMAPA:18754 xref: FMA:49795 xref: http://en.wikipedia.org/wiki/Greater_palatine_artery xref: http://www.snomedbrowser.com/Codes/Details/312163002 xref: MA:0001993 is_a: UBERON:0001637 ! artery relationship: branching_part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery property_value: IAO:0000116 "TODO - check for synonymy between greater and major; branching_part_of relation is made in FMA at level of descending GPA" xsd:string [Term] id: UBERON:0006665 name: accessory hemiazygos vein namespace: uberon def: "The accessory hemiazygos vein (vena azygos minor superior) is a vein on the left side of the vertebral column that generally drains the fifth through eighth intercostal spaces on the left side of the body[WP]." [http://en.wikipedia.org/wiki/Accessory_hemiazygos_vein] synonym: "accessory hemi-azygos vein" EXACT [FMA:5011] synonym: "superior hemi-azygos vein" EXACT [FMA:5011] synonym: "vena azygos accessoria" EXACT [FMA:5011] synonym: "vena hemiazygos accessoria" EXACT LATIN [FMA:5011, FMA:TA] synonym: "vena hemiazygos accessoria" RELATED LATIN [http://en.wikipedia.org/wiki/Accessory_hemiazygos_vein] xref: EMAPA:19217 xref: FMA:5011 xref: http://en.wikipedia.org/wiki/Accessory_hemiazygos_vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001594 ! azygos vein relationship: tributary_of UBERON:0001594 {source="FMA/obol"} ! azygos vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray480.png property_value: IAO:0000116 "TODO - add superclass" xsd:string [Term] id: UBERON:0006666 name: great cerebral vein namespace: uberon def: "The great cerebral vein is one of the large blood vessels in the skull draining the cerebrum (brain)[WP,unvetted]" [http://en.wikipedia.org/wiki/Great_cerebral_vein] synonym: "great cerebral vein" EXACT [FMA:50993] synonym: "great cerebral vein of Galen" EXACT [FMA:50993] synonym: "vein of Galen" EXACT [FMA:50993] xref: EMAPA:19311 xref: FMA:50993 xref: http://en.wikipedia.org/wiki/Great_cerebral_vein xref: http://en.wikipedia.org/wiki/Internal_cerebral_veins xref: http://linkedlifedata.com/resource/umls/id/C0042448 xref: http://www.snomedbrowser.com/Codes/Details/244396002 xref: NCIT:C33855 xref: UMLS:C0042448 {source="ncithesaurus:Great_Cerebral_Vein_of_Galen"} is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0006675 name: venous valve namespace: uberon def: "A valve that is part of a vein." [OBOL:automatic] synonym: "valve of vein" EXACT [FMA:68095] xref: FMA:68095 relationship: part_of UBERON:0001638 ! vein [Term] id: UBERON:0006678 name: foramen secundum namespace: uberon def: "A foramen in the septum secundum." [http://en.wikipedia.org/wiki/Foramen_secundum] synonym: "foramen secundum" RELATED LATIN [http://en.wikipedia.org/wiki/Foramen_secundum] synonym: "ostium secundum" EXACT LATIN [VHOG:0001471] xref: EHDAA2:0001828 xref: EMAPA:17863 xref: FMA:71105 xref: Foramen:secundum xref: http://linkedlifedata.com/resource/umls/id/C1517293 xref: http://www.snomedbrowser.com/Codes/Details/308854001 xref: NCIT:C34179 xref: UMLS:C1517293 {source="ncithesaurus:Foramen_Secundum"} xref: VHOG:0001471 relationship: part_of UBERON:0004155 ! atrial septum secundum property_value: UBPROP:0000001 "Second of the two openings to perforate the septum primum between the two atria of the embryonic heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001471", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/foramen"} property_value: UBPROP:0000003 "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether. [ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620]; [about heart development] In the various tetrapod classes ontogenetic events essentially recapitulate the phylogenetic stages.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001471", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0721676678 p.433"} [Term] id: UBERON:0006686 name: spinal vein namespace: uberon def: "A vein that is part of a vertebral column." [OBOL:automatic] synonym: "spinal branch" RELATED [FMA:76735] synonym: "vena spinalis" EXACT LATIN [FMA:76735, FMA:TA] xref: EMAPA:18255 xref: FMA:76735 xref: http://www.snomedbrowser.com/Codes/Details/181376008 xref: MA:0002108 xref: Spinal:veins is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006687 name: median sacral vein namespace: uberon def: "The median sacral vein (or middle sacral veins) accompany the corresponding artery along the front of the sacrum, and join to form a single vein, which ends in the left common iliac vein; sometimes in the angle of junction of the two iliac veins." [http://en.wikipedia.org/wiki/Median_sacral_vein] xref: EMAPA:26064 xref: FMA:77168 xref: http://en.wikipedia.org/wiki/Median_sacral_vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001317 ! internal iliac vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0006690 name: deep dorsal vein of clitoris namespace: uberon def: "The deep dorsal vein of clitoris is a vein which drains to the vesical plexus." [http://en.wikipedia.org/wiki/Deep_dorsal_vein_of_clitoris] xref: EMAPA:19218 xref: FMA:77504 xref: http://en.wikipedia.org/wiki/Deep_dorsal_vein_of_clitoris xref: http://www.snomedbrowser.com/Codes/Details/25834009 is_a: UBERON:0003480 ! vein of clitoris is_a: UBERON:0035552 ! deep vein relationship: part_of UBERON:0001317 ! internal iliac vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0006694 name: cerebellum vasculature namespace: uberon def: "A vasculature that is part of a cerebellum." [OBOL:automatic] xref: FMA:268519 is_a: UBERON:0006876 ! vasculature of organ is_a: UBERON:0036303 ! vasculature of central nervous system [Term] id: UBERON:0006764 name: anterior communicating artery namespace: uberon def: "A blood vessel of the brain that connects the left and right anterior cerebral arteries. The anterior communicating artery connects the two anterior cerebral arteries across the commencement of the longitudinal fissure. Sometimes this vessel is wanting, the two arteries joining together to form a single trunk, which afterward divides; or it may be wholly, or partially, divided into two. Its length averages about 4 mm, but varies greatly. It gives off some of the anteromedial ganglionic vessels, but these are principally derived from the anterior cerebral artery. It is part of the cerebral arterial circle, also known as the circle of Willis." [http://en.wikipedia.org/wiki/Anterior_communicating_artery] synonym: "arteria communicans anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_communicating_artery] xref: EHDAA2:0000586 xref: EMAPA:18599 xref: FMA:50169 xref: http://en.wikipedia.org/wiki/Anterior_communicating_artery xref: http://linkedlifedata.com/resource/umls/id/C0149562 xref: http://www.snomedbrowser.com/Codes/Details/181311009 xref: NCIT:C32087 xref: UMLS:C0149562 {source="ncithesaurus:Anterior_Communicating_Artery"} is_a: UBERON:0006347 ! communicating artery is_a: UBERON:0035380 ! branch of anterior cerebral artery intersection_of: UBERON:0006347 ! communicating artery intersection_of: branching_part_of UBERON:0001624 ! anterior cerebral artery intersection_of: part_of UBERON:0003709 ! circle of Willis property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg [Term] id: UBERON:0006765 name: left anterior vena cava namespace: uberon synonym: "left superior vena cava" EXACT [EMAPA:18418] xref: EMAPA:18418 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001585 ! anterior vena cava property_value: UBPROP:0000008 "The mouse has both left and right anterior vena cava. adult humans only have a right." xsd:string [Term] id: UBERON:0006766 name: right anterior vena cava namespace: uberon synonym: "right superior vena cava" EXACT [EMAPA:18419] xref: EMAPA:18419 xref: FMA:4720 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001585 ! anterior vena cava property_value: UBPROP:0000001 "Trunk of systemic vein which is formed by the union of the right and left brachiocephalic veins and terminates in the right atrium[FMA:4720]." xsd:string {source="FMA:4720"} property_value: UBPROP:0000008 "The mouse has both left and right anterior vena cava. adult humans only have a right." xsd:string [Term] id: UBERON:0006828 name: trabecula carnea of atrium namespace: uberon def: "The supporting bundles of muscular fibers lining the walls of the atria[MP]." [MP:0010581] is_a: UBERON:0002511 ! trabecula carnea intersection_of: UBERON:0002511 ! trabecula carnea intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium property_value: IAO:0000116 "Not present in any AO. Note that WP states that trabecular carnea are ventricular and 'They should not be confused with the pectinate muscles, which are present in the right and left atria only'" xsd:string [Term] id: UBERON:0006829 name: remnant of left anterior vena cava namespace: uberon def: "." [http://en.wikipedia.org/wiki/Persistent_left_superior_vena_cava] xref: http://en.wikipedia.org/wiki/Persistent_left_superior_vena_cava is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: develops_from UBERON:0006765 ! left anterior vena cava relationship: part_of UBERON:0002078 ! right cardiac atrium property_value: UBPROP:0000008 "The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003)." xsd:string [Term] id: UBERON:0006841 name: central vein of liver namespace: uberon def: "Vein that is central to a lobule in the liver." [ZFA:0005168] subset: vertebrate_core synonym: "central vein" BROAD [ZFA:0005168] synonym: "terminal branch of hepatic vein" EXACT [FMA:17544] synonym: "terminal hepatic venule" EXACT [FMA:17544] synonym: "vena centralis (hepar)" EXACT [FMA:17544] xref: FMA:17544 xref: http://en.wikipedia.org/wiki/Central_veins_of_liver xref: http://www.snomedbrowser.com/Codes/Details/272023004 xref: NCIT:C32281 xref: TAO:0005168 xref: ZFA:0005168 is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0015796 ! liver blood vessel [Term] id: UBERON:0006842 name: lymphatic capillary namespace: uberon def: "Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells. Joins to form the lymphatic vessels." [ZFA:0005252] subset: vertebrate_core synonym: "lymph capillary" EXACT [FMA:5028] xref: FMA:5028 xref: http://linkedlifedata.com/resource/umls/id/C0162405 xref: NCIT:C33037 xref: TAO:0005252 xref: UMLS:C0162405 {source="ncithesaurus:Lymphatic_Capillary"} xref: ZFA:0005252 is_a: UBERON:0001473 {source="FMA"} ! lymphatic vessel is_a: UBERON:0010523 {source="ZFA"} ! microcirculatory vessel property_value: IAO:0000116 "TODO - check superclass" xsd:string property_value: UBPROP:0000001 "Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005252", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0006851 name: renal cortex peritubular capillary namespace: uberon def: "A peritubular capillary that is part of a cortex of kidney." [OBOL:automatic] synonym: "kidney cortex peritubular capillary" EXACT [MA:0002590] xref: EMAPA:37488 {source="MA:th"} xref: MA:0002590 is_a: UBERON:0005272 ! peritubular capillary [Term] id: UBERON:0006876 name: vasculature of organ namespace: uberon def: "A vasculature that is part of a organ." [OBOL:automatic] subset: non_informative synonym: "organ vasculature" EXACT [FMA:74612] synonym: "set of blood vessels of organ" EXACT [FMA:74612] xref: FMA:74612 is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0006877 name: vasculature of liver namespace: uberon def: "A vasculature that is part of a liver." [OBOL:automatic] subset: pheno_slim synonym: "hepatic vascular element" RELATED [EMAPA:35501] synonym: "hepatic vasculature" EXACT [FMA:73748] synonym: "liver vascular element" RELATED [EMAPA:35501] synonym: "liver vascular system" RELATED [EHDAA2:0003454] xref: EHDAA2:0003454 xref: EMAPA:35501 xref: FMA:73748 is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ property_value: UBPROP:0000012 "the EHDAA2 term and the FMA term may not be exact equivalents - check" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0006958 name: great vein of heart namespace: uberon def: "The Great Cardiac Vein (left coronary vein) begins at the apex of the heart and ascends along the anterior longitudinal sulcus to the base of the ventricles. It then curves to the left in the coronary sulcus, and reaching the back of the heart, opens into the left extremity of the coronary sinus. It receives tributaries from the left atrium and from both ventricles: one, the left marginal vein, is of considerable size, and ascends along the left margin of the heart." [http://en.wikipedia.org/wiki/Great_cardiac_vein] synonym: "great cardiac vein" EXACT [FMA:4707] synonym: "vena cardiaca magna" RELATED LATIN [http://en.wikipedia.org/wiki/Great_cardiac_vein] synonym: "vena cordis magna" RELATED LATIN [http://en.wikipedia.org/wiki/Great_cardiac_vein] xref: EHDAA2:0004508 xref: EMAPA:37225 {source="MA:th"} xref: FMA:4707 xref: http://en.wikipedia.org/wiki/Great_cardiac_vein xref: http://linkedlifedata.com/resource/umls/id/C0226659 xref: http://www.snomedbrowser.com/Codes/Details/277728005 xref: MA:0002131 xref: NCIT:C12879 xref: UMLS:C0226659 {source="ncithesaurus:Great_Cardiac_Vein"} is_a: UBERON:0004148 ! cardiac vein relationship: in_left_side_of UBERON:0000948 ! heart property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/57/Gray556.png [Term] id: UBERON:0006965 name: vascular cord namespace: uberon def: "The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077] subset: efo_slim xref: EFO:0003709 xref: TAO:0005077 xref: ZFA:0005077 relationship: part_of UBERON:0014903 ! primordial vasculature [Term] id: UBERON:0006966 name: coronary capillary namespace: uberon def: "A capillary that is part of the coronary system." [http://orcid.org/0000-0002-6601-2165] synonym: "heart capillary" EXACT [GO:0003248] xref: ZFA:0005813 is_a: UBERON:0001982 ! capillary is_a: UBERON:0003498 ! heart blood vessel intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0007100 name: primary circulatory organ namespace: uberon def: "A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood or analogs[GO,modified]." [GO:0007507] comment: Gene notes: Bmp, Nkx, Gata subset: grouping_class synonym: "adult heart" RELATED [FBbt:00003154] synonym: "dorsal tube" NARROW [http://en.wikipedia.org/wiki/Heart] synonym: "heart" NARROW [GO:0007507] xref: FBbt:00003154 xref: http://www.sciencemag.org/content/313/5795/1922/F1.large.jpg xref: SPD:0000130 xref: TADS:0000147 is_a: UBERON:0015228 ! circulatory organ disjoint_from: UBERON:0015229 ! accessory circulatory organ relationship: has_part CL:0002494 ! cardiocyte property_value: UBPROP:0000008 "note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. 'The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian'. Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis" xsd:string [Term] id: UBERON:0007142 name: left internal carotid artery namespace: uberon def: "An internal carotid artery that branching_part_of a left common carotid artery plus branches." [OBOL:automatic] synonym: "arteria caritis interna sinistra" EXACT [FMA:4062] xref: EMAPA:16329 xref: FMA:4062 xref: http://www.snomedbrowser.com/Codes/Details/161452006 is_a: UBERON:0001532 ! internal carotid artery intersection_of: UBERON:0001532 ! internal carotid artery intersection_of: branching_part_of UBERON:0001536 ! left common carotid artery plus branches relationship: branching_part_of UBERON:0001536 ! left common carotid artery plus branches relationship: part_of UBERON:0001536 ! left common carotid artery plus branches [Term] id: UBERON:0007143 name: right internal carotid artery namespace: uberon def: "An internal carotid artery that branching_part_of a right common carotid artery plus branches." [OBOL:automatic] synonym: "arteria carotis interna dextra" EXACT [FMA:3949] xref: EMAPA:16330 xref: FMA:3949 xref: http://www.snomedbrowser.com/Codes/Details/161251001 is_a: UBERON:0001532 ! internal carotid artery intersection_of: UBERON:0001532 ! internal carotid artery intersection_of: branching_part_of UBERON:0001531 ! right common carotid artery plus branches relationship: branching_part_of UBERON:0001531 ! right common carotid artery plus branches relationship: part_of UBERON:0001531 ! right common carotid artery plus branches [Term] id: UBERON:0007146 name: posterior spinal artery namespace: uberon def: "A spinal artery that arises from the vertebral artery, adjacent to the medulla oblongata[WP,modified]." [http://en.wikipedia.org/wiki/Posterior_spinal_artery] synonym: "dorsal spinal artery" EXACT [FMA:50522] xref: EMAPA:18243 xref: FMA:50522 xref: http://en.wikipedia.org/wiki/Posterior_spinal_artery xref: http://linkedlifedata.com/resource/umls/id/C0226233 xref: http://www.snomedbrowser.com/Codes/Details/181330009 xref: NCIT:C12876 xref: UMLS:C0226233 {source="ncithesaurus:Posterior_Spinal_Artery"} is_a: UBERON:0002458 ! spinal artery relationship: develops_from UBERON:0001535 {source="EHDAA2"} ! vertebral artery [Term] id: UBERON:0007149 name: inferior thyroid artery namespace: uberon def: "One of the three branches of the thyroid axis that supplies the thyroid gland and branches to form the ascending cervical, esophageal, inferior laryngeal, muscular and tracheal arteries." [ncithesaurus:Inferior_Thyroid_Artery] synonym: "arteria thyreoidea inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_thyroid_artery] xref: EMAPA:18623 xref: FMA:10662 xref: http://en.wikipedia.org/wiki/Inferior_thyroid_artery xref: http://linkedlifedata.com/resource/umls/id/C0226264 xref: http://www.snomedbrowser.com/Codes/Details/303419004 xref: NCIT:C53022 xref: UMLS:C0226264 {source="ncithesaurus:Inferior_Thyroid_Artery"} is_a: UBERON:0003847 ! thyroid artery property_value: depicted:by Thyrocervical:trunk.png [Term] id: UBERON:0007150 name: superior thyroid artery namespace: uberon def: "The superior thyroid artery arises from the external carotid artery just below the level of the greater cornu of the hyoid bone and ends in the thyroid gland." [http://en.wikipedia.org/wiki/Superior_thyroid_artery] synonym: "arteria thyreoidea superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_thyroid_artery] xref: EMAPA:18624 xref: FMA:49472 xref: http://en.wikipedia.org/wiki/Superior_thyroid_artery xref: http://linkedlifedata.com/resource/umls/id/C0226093 xref: http://www.snomedbrowser.com/Codes/Details/244218002 xref: NCIT:C53021 xref: UMLS:C0226093 {source="ncithesaurus:Superior_Thyroid_Artery"} is_a: UBERON:0003847 ! thyroid artery is_a: UBERON:0035398 ! branch of external carotid artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5a/Plate_16_Zuckerkandl.jpg [Term] id: UBERON:0007151 name: mitral valve leaflet namespace: uberon def: "A valve leafleft that is part of a mitral valve." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "leaflet of mitral valve" EXACT [FMA:7241] synonym: "mitral valve leaflet" EXACT [FMA:7241] synonym: "mitral valve leaflets" RELATED PLURAL [VHOG:0000822] synonym: "mitral valvular leaflet" EXACT [FMA:7241] xref: EMAPA:18628 xref: FMA:7241 xref: http://www.snomedbrowser.com/Codes/Details/244353007 xref: VHOG:0000822 is_a: UBERON:0011741 ! cardiac valve leaflet intersection_of: UBERON:0011741 ! cardiac valve leaflet intersection_of: part_of UBERON:0002135 ! mitral valve relationship: attaches_to UBERON:0005995 ! mitral valve anulus relationship: attaches_to UBERON:0014851 {source="FMA-abduced"} ! chorda tendinea of left ventricle relationship: part_of UBERON:0002135 ! mitral valve property_value: UBPROP:0000001 "Leaf of cardiac valve which has as its parts the anterior, and posterior leaflets that is attached to the chorda tendinea of left ventricle and to the frbrous ring of mitral valve." xsd:string {source="FMA:7241"} property_value: UBPROP:0000003 "The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000822", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)"} [Term] id: UBERON:0007152 name: inferior sagittal sinus namespace: uberon def: "An intracranial venous sinus that lies in a midline location along the lower free border of the falx cerebri of the brain. The sinus receives blood from the great cerebral vein and joins the superior sagittal sinus posteriorly." [ncithesaurus:Inferior_Sagittal_Sinus] xref: EMAPA:18635 xref: FMA:50768 xref: http://en.wikipedia.org/wiki/Inferior_sagittal_sinus xref: http://linkedlifedata.com/resource/umls/id/C0226861 xref: http://www.snomedbrowser.com/Codes/Details/279260007 xref: NCIT:C12514 xref: UMLS:C0226861 {source="ncithesaurus:Inferior_Sagittal_Sinus"} is_a: UBERON:0015704 ! sagittal sinus intersection_of: UBERON:0015704 ! sagittal sinus intersection_of: tributary_of UBERON:0005481 ! tentorial sinus relationship: part_of UBERON:0005481 ! tentorial sinus relationship: tributary_of UBERON:0005481 ! tentorial sinus [Term] id: UBERON:0007153 name: superior epigastric artery namespace: uberon def: "An artery that arises from the internal thoracic arteryand anastomoses with the inferior epigastric artery at the umbilicus and supplies the anterior part of the abdominal wall and some of the diaphragm." [http://en.wikipedia.org/wiki/Superior_epigastric_artery, http://orcid.org/0000-0002-6601-2165] synonym: "a. epigastrica superior" RELATED [http://en.wikipedia.org/wiki/Superior_epigastric_artery] synonym: "superior epigastric" BROAD [http://en.wikipedia.org/wiki/Superior_epigastric_artery] synonym: "superior epigastric branch" BROAD [http://en.wikipedia.org/wiki/Superior_epigastric_artery] xref: EMAPA:18752 xref: FMA:10646 xref: http://en.wikipedia.org/wiki/Superior_epigastric_artery xref: http://www.snomedbrowser.com/Codes/Details/244287004 is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0006349 ! epigastric artery intersection_of: UBERON:0006349 ! epigastric artery intersection_of: anastomoses_with UBERON:0001354 ! inferior epigastric artery intersection_of: branching_part_of UBERON:0002456 ! internal thoracic artery relationship: anastomoses_with UBERON:0001354 ! inferior epigastric artery relationship: branching_part_of UBERON:0002456 ! internal thoracic artery relationship: part_of UBERON:0002456 ! internal thoracic artery [Term] id: UBERON:0007154 name: inferior epigastric vein namespace: uberon def: "The blood vessel carrying deoxygenated blood that arises from the superior epigastric vein and empties into the external iliac vein." [ncithesaurus:Deep_Epigastric_Vein] synonym: "deep epigastric vein" RELATED [] synonym: "venae epigastricae inferiores" RELATED LATIN [] xref: EMAPA:18760 xref: FMA:21162 xref: http://linkedlifedata.com/resource/umls/id/C0226762 xref: http://www.snomedbrowser.com/Codes/Details/286872000 xref: NCIT:C32434 xref: UMLS:C0226762 {source="ncithesaurus:Deep_Epigastric_Vein"} is_a: UBERON:0006356 ! epigastric vein relationship: part_of UBERON:0001316 ! external iliac vein relationship: tributary_of UBERON:0001316 ! external iliac vein [Term] id: UBERON:0007155 name: superior epigastric vein namespace: uberon def: "A vein that drains into the internal thoracic vein, anastomosing with the inferior epigastric vein at the level of the umbilicus and drains the anterior part of the abdominal wall and some of the diaphragm. Along its course, it is accompanied by a similarly named artery, the superior epigastric artery." [http://en.wikipedia.org/wiki/Superior_epigastric_vein, UBERON:cjm] synonym: "venae epigastricae superiores" RELATED LATIN [] xref: EMAPA:18761 xref: FMA:4731 xref: http://en.wikipedia.org/wiki/Superior_epigastric_vein xref: http://www.snomedbrowser.com/Codes/Details/286596001 is_a: UBERON:0005194 ! thoracic vein is_a: UBERON:0006356 ! epigastric vein relationship: part_of UBERON:0001589 ! internal thoracic vein relationship: tributary_of UBERON:0001589 {source="FMA/obol"} ! internal thoracic vein [Term] id: UBERON:0007156 name: inferior thyroid vein namespace: uberon def: "The inferior thyroid veins two, frequently three or four, in number, arise in the venous plexus on the thyroid gland, communicating with the middle and superior thyroid veins. They form a plexus in front of the trachea, behind the Sternothyreoidei. From this plexus, a left vein descends and joins the left innominate trunk, and a right vein passes obliquely downward and to the right across the innominate artery to open into the right innominate vein, just at its junction with the superior vena cava; sometimes the right and left veins open by a common trunk in the latter situation. These veins receive esophageal tracheal, and inferior laryngeal veins, and are provided with valves at their terminations in the innominate veins." [http://en.wikipedia.org/wiki/Inferior_thyroid_veins] synonym: "inferior thyroid venous tree" EXACT [FMA:4728] synonym: "vena thyroidea inferioris" EXACT [FMA:4728] xref: EMAPA:18763 xref: FMA:4728 xref: http://en.wikipedia.org/wiki/Inferior_thyroid_veins xref: http://www.snomedbrowser.com/Codes/Details/303423007 is_a: UBERON:0018246 ! thyroid vein [Term] id: UBERON:0007157 name: superior thyroid vein namespace: uberon def: "The superior thyroid vein begins in the substance and on the surface of the thyroid gland, by tributaries corresponding with the branches of the superior thyroid artery, and ends in the upper part of the internal jugular vein. It receives the superior laryngeal and cricothyroid veins." [http://en.wikipedia.org/wiki/Superior_thyroid_vein] xref: EMAPA:18764 xref: FMA:14323 xref: http://en.wikipedia.org/wiki/Superior_thyroid_vein xref: http://www.snomedbrowser.com/Codes/Details/303421009 is_a: UBERON:0018246 ! thyroid vein [Term] id: UBERON:0007160 name: inferior petrosal sinus namespace: uberon def: "The inferior petrosal sinus, within the human head, is an area beneath the brain, which allows blood veins to span the area, from the center of the head downward. It drains from the cavernous sinus (beneath the brain) to the sigmoid sinuses above the internal jugular vein." [http://en.wikipedia.org/wiki/Inferior_petrosal_sinus] synonym: "sinus petrosal inferior" EXACT [FMA:50770] xref: EMAPA:19234 xref: FMA:50770 xref: http://en.wikipedia.org/wiki/Inferior_petrosal_sinus xref: http://www.snomedbrowser.com/Codes/Details/279263009 is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus [Term] id: UBERON:0007181 name: serosa of infundibulum of uterine tube namespace: uberon def: "A serous membrane that is part of a uterine tube infundibulum." [OBOL:automatic] synonym: "serosa of infundibulum of fallopian tube" EXACT [FMA:18324] synonym: "serosa of infundibulum of oviduct" EXACT [FMA:18324] xref: EMAPA:29903 xref: FMA:18324 relationship: part_of UBERON:0003983 ! conus arteriosus [Term] id: UBERON:0007182 name: muscle layer of infundibulum of uterine tube namespace: uberon def: "A muscle layer that is part of a uterine tube infundibulum." [OBOL:automatic] synonym: "muscle layer of infundibulum of fallopian tube" EXACT [FMA:18336] synonym: "muscle layer of infundibulum of oviduct" EXACT [FMA:18336] synonym: "muscularis of infundibulum of uterine tube" EXACT [FMA:18336] xref: EMAPA:31264 xref: FMA:18336 is_a: UBERON:0005983 ! heart layer relationship: part_of UBERON:0003983 ! conus arteriosus [Term] id: UBERON:0007186 name: pericardial visceral mesothelium namespace: uberon def: "A visceral mesothelium that is part of a pericardium." [OBOL:automatic] synonym: "mesothelium of visceral pericardium" EXACT [FMA:19741] synonym: "mesothelium of visceral serous pericardium" EXACT [FMA:19741] synonym: "pericardial visceral mehomhelium" RELATED [VHOG:0000778] synonym: "pericardium visceral mesothelium" RELATED [EMAPA:16589] synonym: "visceral serous pericardium mesothelium" EXACT [FMA:19741] xref: EMAPA:16589 xref: FMA:19741 xref: VHOG:0000778 is_a: UBERON:0003388 ! mesothelium of pericardial cavity property_value: UBPROP:0000003 "Found in all vertebrates, the VP (visceral pericardium) is also known as the cardiac epimysium. This outermost layer of the epicardium consists of a thin layer of mesothelial cells over a dense network of collagen and elastin fibers.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000778", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1152/ajpheart.00967.2007 Jöbsis PD, Ashikaga H, Wen H, Rothstein EC, Horvath KA, McVeigh ER, Balaban RS, The visceral pericardium: macromolecular structure and contribution to passive mechanical properties of the left ventricle. American journal of physiology, Heart and circulatory physiology (2007)"} [Term] id: UBERON:0007187 name: pericardial parietal mesothelium namespace: uberon def: "A parietal mesothelium that is part of a pericardium." [OBOL:automatic] synonym: "mesothelium of parietal pericardium" EXACT [FMA:19742] synonym: "mesothelium of parietal serous pericardium" EXACT [FMA:19742] synonym: "parietal serous pericardium mesothelium" EXACT [FMA:19742] synonym: "pericardium parietal mesothelium" EXACT [EMAPA:16588] xref: EMAPA:16588 xref: FMA:19742 is_a: UBERON:0003388 ! mesothelium of pericardial cavity property_value: UBPROP:0000012 "EMAPA:16588 belongs here on the basis of exact synonym" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0007188 name: mesothelium of serous pericardium namespace: uberon def: "A mesothelium that is part of a serous pericardium." [OBOL:automatic] synonym: "mesothelium of pericardium" EXACT [FMA:18149] synonym: "pericardial mesothelium" EXACT [FMA:18149] synonym: "serous pericardium mesothelium" EXACT [FMA:18149] xref: BTO:0003157 xref: EMAPA:16133 xref: FMA:18149 xref: http://www.snomedbrowser.com/Codes/Details/67300002 is_a: UBERON:0003388 ! mesothelium of pericardial cavity relationship: part_of UBERON:0002357 ! serous pericardium [Term] id: UBERON:0007204 name: brachiocephalic vasculature namespace: uberon def: "The vasculature consisting of brachiocephalic arteries and veins." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0007239 name: tunica media of artery namespace: uberon def: "A tunica media that is part of a artery." [OBOL:automatic] synonym: "arterial media" EXACT [EV:0100029] synonym: "tunica media (arteriae)" EXACT [FMA:14273] xref: EMAPA:36294 xref: EV:0100029 xref: FMA:14273 xref: http://linkedlifedata.com/resource/umls/id/C1710627 xref: http://www.snomedbrowser.com/Codes/Details/84300001 xref: NCIT:C49321 xref: UMLS:C1710627 {source="ncithesaurus:Venous_System_Smooth_Muscle_Tissue"} is_a: UBERON:0002522 ! tunica media intersection_of: UBERON:0002522 ! tunica media intersection_of: part_of UBERON:0001637 ! artery relationship: part_of UBERON:0000415 ! artery wall [Term] id: UBERON:0007240 name: tunica adventitia of artery namespace: uberon def: "A tunica adventitia that is part of a artery." [OBOL:automatic] synonym: "arterial adventitia" EXACT [EV:0100030] synonym: "tunica externa (adventitia)(arteriae)" EXACT [FMA:14274] xref: EMAPA:36295 xref: EV:0100030 xref: FMA:14274 xref: http://www.snomedbrowser.com/Codes/Details/113261001 is_a: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: part_of UBERON:0001637 ! artery relationship: has_part CL:1000306 {source="FMA"} ! fibroblast of tunica adventitia of artery relationship: part_of UBERON:0000415 ! artery wall [Term] id: UBERON:0007241 name: tunica adventitia of vein namespace: uberon def: "A tunica adventitia that is part of a vein." [OBOL:automatic] synonym: "tunica externa (adventitia)(venae)" EXACT [FMA:14355] synonym: "venous adventitia" EXACT [EV:0100034] xref: EMAPA:36310 xref: EV:0100034 xref: FMA:14355 xref: http://www.snomedbrowser.com/Codes/Details/13202006 is_a: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: part_of UBERON:0001638 ! vein relationship: part_of UBERON:0001638 ! vein [Term] id: UBERON:0007242 name: tunica intima of vein namespace: uberon def: "A tunica intima that is part of a vein." [OBOL:automatic] synonym: "tunica interna (intima)(venae)" EXACT [FMA:14353] synonym: "venous intima" EXACT [EV:0100032] xref: EMAPA:36308 xref: EV:0100032 xref: FMA:14353 xref: http://www.snomedbrowser.com/Codes/Details/2436009 is_a: UBERON:0004797 ! blood vessel layer relationship: part_of UBERON:0001638 ! vein [Term] id: UBERON:0007243 name: tunica media of vein namespace: uberon def: "A tunica media that is part of a vein." [OBOL:automatic] synonym: "tunica media (venae)" EXACT [FMA:14354] synonym: "venous media" EXACT [EV:0100033] xref: EMAPA:36309 xref: EV:0100033 xref: FMA:14354 xref: http://www.snomedbrowser.com/Codes/Details/42049001 is_a: UBERON:0002522 ! tunica media intersection_of: UBERON:0002522 ! tunica media intersection_of: part_of UBERON:0001638 ! vein relationship: part_of UBERON:0001638 ! vein [Term] id: UBERON:0007299 name: choroid plexus of tectal ventricle namespace: uberon def: "A choroid plexus that is part of a cerebral aqueduct." [OBOL:automatic] synonym: "choroid plexus tectal ventricle" EXACT [ZFA:0001445] synonym: "choroid plexus tectal ventricles" RELATED PLURAL [ZFA:0001445] xref: TAO:0001445 xref: ZFA:0001445 is_a: UBERON:0001886 ! choroid plexus [Term] id: UBERON:0007300 name: pectoral appendage blood vessel namespace: uberon def: "A blood vessel that is part of a pectoral appendage." [OBOL:automatic] synonym: "pectoral fin blood vessel" NARROW SENSU [ZFA:0005301] xref: TAO:0005301 xref: ZFA:0005301 is_a: UBERON:0007301 ! appendage blood vessel [Term] id: UBERON:0007301 name: appendage blood vessel namespace: uberon def: "A blood vessel that is part of a limb/fin." [OBOL:automatic] synonym: "fin blood vessel" NARROW SENSU [ZFA:0005299] synonym: "limb blood vessel" NARROW SENSU [] xref: TAO:0005299 xref: ZFA:0005299 is_a: UBERON:0001981 ! blood vessel relationship: part_of UBERON:0007304 ! appendage vasculature [Term] id: UBERON:0007302 name: pectoral appendage vasculature namespace: uberon def: "A vasculature that is part of a pectoral appendage." [OBOL:automatic] synonym: "pectoral fin vasculature" NARROW SENSU [ZFA:0005096] xref: TAO:0005096 xref: ZFA:0005096 is_a: UBERON:0007304 ! appendage vasculature [Term] id: UBERON:0007303 name: pharyngeal vasculature namespace: uberon def: "A vasculature that is part of a chordate pharynx." [OBOL:automatic] synonym: "branchial vasculature" EXACT [ZFA:0005003] xref: TAO:0005003 xref: ZFA:0005003 is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0007304 name: appendage vasculature namespace: uberon def: "A vasculature that is part of a limb/fin." [OBOL:automatic] synonym: "fin vasculature" NARROW SENSU [ZFA:0005095] xref: TAO:0005095 xref: ZFA:0005095 is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0007306 name: pronephric glomerular capillary namespace: uberon def: "A glomerular capillary that is part of a pronephros." [OBOL:automatic] xref: TAO:0005309 xref: ZFA:0005309 is_a: UBERON:0004212 ! glomerular capillary [Term] id: UBERON:0007312 name: pudendal artery namespace: uberon def: "Either the internal or external pudendal arteries." [http://en.wikipedia.org/wiki/Pudendal_artery] xref: EMAPA:37111 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/277968003 xref: MA:0002028 xref: Pudendal:artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0007314 name: superior external pudendal artery namespace: uberon xref: EMAPA:37119 {source="MA:th"} xref: MA:0002029 is_a: UBERON:0013137 ! external pudendal artery [Term] id: UBERON:0007315 name: internal pudendal artery namespace: uberon def: "The internal pudendal artery is an artery that branches off the internal iliac artery, providing blood to the external genitalia. The internal pudendal artery is the terminal branch of the anterior trunk of the internal iliac artery. It is smaller in the female than in the male." [http://en.wikipedia.org/wiki/Internal_pudendal_artery] synonym: "arteria pudenda interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_pudendal_artery] synonym: "internal pudendal vessels" RELATED [http://en.wikipedia.org/wiki/Internal_pudendal_artery] synonym: "internal pudic artery" RELATED [http://en.wikipedia.org/wiki/Internal_pudendal_artery] xref: FMA:18835 xref: http://en.wikipedia.org/wiki/Internal_pudendal_artery xref: http://www.snomedbrowser.com/Codes/Details/244309002 is_a: UBERON:0003835 ! abdominal segment blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0007312 ! pudendal artery relationship: branching_part_of UBERON:0001309 ! internal iliac artery relationship: part_of UBERON:0001309 ! internal iliac artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png [Term] id: UBERON:0007316 name: deep external pudendal artery namespace: uberon def: "The deep external pudendal artery (deep external pudic artery), more deeply seated than the superficial external pudendal artery, passes medialward across the Pectineus and the Adductor longus muscles; it is covered by the fascia lata, which it pierces at the medial side of the thigh, and is distributed, in the male, to the integument of the scrotum and perineum, in the female to the labium majus; its branches anastomose with the scrotal (or labial) branches of the perineal artery." [http://en.wikipedia.org/wiki/Deep_external_pudendal_artery] synonym: "arteria pudenda externa profunda" RELATED LATIN [http://en.wikipedia.org/wiki/Deep_external_pudendal_artery] xref: FMA:20739 xref: http://en.wikipedia.org/wiki/Deep_external_pudendal_artery xref: http://www.snomedbrowser.com/Codes/Details/31708008 is_a: UBERON:0001355 ! deep femoral artery is_a: UBERON:0013137 ! external pudendal artery intersection_of: UBERON:0013137 ! external pudendal artery intersection_of: part_of UBERON:0035551 ! deep vasculature property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/43/Gray549.png [Term] id: UBERON:0007317 name: superficial external pudendal artery namespace: uberon def: "An artery that arises from the medial side of the femoral artery, close to the superficial epigastric artery and superficial iliac circumflex artery." [http://en.wikipedia.org/wiki/Superficial_external_pudendal_artery] comment: After piercing the femoral sheath and fascia cribrosa, it courses medialward, across the spermatic cord (or round ligament in the female), to be distributed to the integument on the lower part of the abdomen, the penis and scrotum in the male, and the labium majus in the female, anastomosing with branches of the internal pudendal artery. it crosses superficial to the inguinal ligament[WP] synonym: "arteria pudenda externa superficialis" RELATED LATIN [http://en.wikipedia.org/wiki/Superficial_external_pudendal_artery] synonym: "superficial external pudic artery" EXACT [] xref: FMA:20738 xref: http://en.wikipedia.org/wiki/Superficial_external_pudendal_artery xref: http://www.snomedbrowser.com/Codes/Details/47954000 is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0013137 ! external pudendal artery intersection_of: UBERON:0013137 ! external pudendal artery intersection_of: part_of UBERON:0035549 ! vasculature of integument relationship: branching_part_of UBERON:0002060 {source="FMA"} ! femoral artery relationship: part_of UBERON:0002060 ! femoral artery relationship: part_of UBERON:0035549 ! vasculature of integument property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/43/Gray549.png [Term] id: UBERON:0007318 name: saphenous vein namespace: uberon def: "Either of two main superficial veins of the leg, one larger than the other, that begin at the foot." [BTO:0001808] xref: BTO:0001808 xref: CALOHA:TS-0893 xref: EMAPA:37186 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C0036186 xref: MA:0002215 xref: MESH:D012501 xref: NCIT:C33511 xref: UMLS:C0036186 {source="ncithesaurus:Saphenous_Vein"} is_a: UBERON:0004261 ! lower leg blood vessel is_a: UBERON:0035550 ! superficial vein [Term] id: UBERON:0007319 name: medial saphenous vein namespace: uberon synonym: "medial accessory saphenous vein" EXACT [FMA:44322] xref: EMAPA:37172 {source="MA:th"} xref: FMA:44322 xref: MA:0002173 is_a: UBERON:0013145 ! accessory saphenous vein disjoint_from: UBERON:0007321 {source="lexical"} ! lateral saphenous vein property_value: IAO:0000116 "TODO - check" xsd:string [Term] id: UBERON:0007321 name: lateral saphenous vein namespace: uberon synonym: "lateral accessory saphenous vein" EXACT [FMA:44321] xref: EMAPA:37162 {source="MA:th"} xref: FMA:44321 xref: MA:0002161 is_a: UBERON:0013145 ! accessory saphenous vein property_value: IAO:0000116 "TODO - check" xsd:string [Term] id: UBERON:0007352 name: stria vascularis vasculature namespace: uberon def: "blood vessels supplying the stria vascularis in the cochlea of the inner ear." [MP:0004368] synonym: "stria vascularis blood vessel" RELATED [MP:0004368] synonym: "stria vascularis blood vessels" EXACT [] is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0007384 name: appendage lymph vessel namespace: uberon def: "A lymphatic vessel that is part of a limb/fin." [OBOL:automatic] xref: TAO:0005300 xref: ZFA:0005300 is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0007304 ! appendage vasculature [Term] id: UBERON:0007385 name: pectoral appendage lymph vessel namespace: uberon def: "A lymphatic vessel that is part of a pectoral appendage." [OBOL:automatic] xref: TAO:0005302 xref: ZFA:0005302 is_a: UBERON:0007384 ! appendage lymph vessel relationship: part_of UBERON:0007302 ! pectoral appendage vasculature [Term] id: UBERON:0007386 name: pelvic appendage lymph vessel namespace: uberon def: "A lymphatic vessel that is part of a pelvic appendage." [OBOL:automatic] is_a: UBERON:0007384 ! appendage lymph vessel [Term] id: UBERON:0007610 name: tibial artery namespace: uberon def: "The anterior and posterior arteries created at the bifurcation of the popliteal artery. The anterior tibial artery begins at the lower border of the popliteus muscle and lies along the tibia at the distal part of the leg to surface superficially anterior to the ankle joint. Its branches are distributed throughout the leg, ankle, and pes. The posterior tibial artery begins at the lower border of the popliteus muscle, lies behind the tibia in the lower part of its course, and is found situated between the medial malleolus and the medial process of the calcaneal tuberosity. Its branches are distributed throughout the leg and foot." [MESH:A07.231.114.895] xref: EMAPA:36530 xref: GAID:514 xref: http://linkedlifedata.com/resource/umls/id/C0085427 xref: http://www.snomedbrowser.com/Codes/Details/181351007 xref: MA:0002067 xref: MESH:D016909 xref: NCIT:C12824 xref: UMLS:C0085427 {source="ncithesaurus:Tibial_Artery"} is_a: UBERON:0003516 ! hindlimb blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0002250 ! popliteal artery relationship: part_of UBERON:0002250 ! popliteal artery [Term] id: UBERON:0007622 name: pecten oculi namespace: uberon def: "A comb-like structure of blood vessels belonging to the choroid in the eye of a bird or reptile. It is non-sensory and is a pigmented structure that projects into the vitreous body from the point where the optic nerve enters the eyeball. The pecten is believed to both nourish the retina and control the pH of the vitreous body." [http://en.wikipedia.org/wiki/Pecten_oculi] comment: ventral optic cup derivative synonym: "pecten" BROAD [] xref: Pecten:oculi is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0001776 ! optic choroid property_value: depicted:by https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Birdeye.jpg/700px-Birdeye.jpg [Term] id: UBERON:0007679 name: intersomitic vein namespace: uberon def: "The vein that sprouts from the posterior cardinal vein, growing dorsally between the somites, and then joining, and draining the dorsal longitudinal anastomosing vessel." [MGI:anna] subset: pheno_slim synonym: "intersegmental vein" EXACT [ZFA:0001057] synonym: "ISV" BROAD [ZFA:0001057] synonym: "segmental vein" RELATED [EMAPA:26056] xref: EMAPA:26056 xref: http://www.snomedbrowser.com/Codes/Details/361448009 xref: TAO:0001057 xref: ZFA:0001057 is_a: UBERON:0001638 ! vein is_a: UBERON:0014907 ! intersomitic vessel property_value: UBPROP:0000001 "Primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel. Isogai et al. 2003.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001057", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0007693 name: caroticotympanic artery namespace: uberon def: "The caroticotympanic branch (tympanic branch) is small; it enters the tympanic cavity through a minute foramen in the carotid canal, and anastomoses with the anterior tympanic branch of the internal maxillary, and with the stylomastoid artery." [http://en.wikipedia.org/wiki/Caroticotympanic_arteries] synonym: "arteriae caroticotympanicae" RELATED LATIN [http://en.wikipedia.org/wiki/Caroticotympanic_arteries] synonym: "caroticotympanic branch" RELATED [http://en.wikipedia.org/wiki/Caroticotympanic_arteries] synonym: "ramus caroticotympanicus" RELATED LATIN [http://en.wikipedia.org/wiki/Caroticotympanic_arteries] xref: Caroticotympanic:arteries xref: FMA:49828 xref: http://www.snomedbrowser.com/Codes/Details/148470005 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001532 {source="FMA"} ! internal carotid artery relationship: develops_from UBERON:0005608 {source="http://www.ajnr.org/cgi/content/full/21/3/572"} ! hyoid artery relationship: part_of UBERON:0001532 ! internal carotid artery [Term] id: UBERON:0007718 name: principal artery to limb namespace: uberon is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0007777 name: umbilical vein endothelium namespace: uberon def: "An endothelium that is part of a umbilical vein." [OBOL:automatic] xref: BTO:0001416 xref: CALOHA:TS-1081 is_a: UBERON:0001919 ! endothelium of vein relationship: part_of UBERON:0002066 {source="BTO"} ! umbilical vein [Term] id: UBERON:0007778 name: umbilical artery endothelium namespace: uberon def: "An endothelium that is part of a umbilical artery." [OBOL:automatic] xref: BTO:0000857 is_a: UBERON:0001917 ! endothelium of artery relationship: part_of UBERON:0001310 {source="BTO"} ! umbilical artery [Term] id: UBERON:0007798 name: vascular system namespace: uberon def: "Anatomical system that consists of all blood and lymph vessels." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "Gefaesssystem@de" RELATED [BTO:0001085] xref: BTO:0001085 xref: CALOHA:TS-2053 xref: EHDAA2:0004520 xref: EMAPA:35905 xref: http://linkedlifedata.com/resource/umls/id/C0489903 xref: MA:0002718 xref: NCIT:C33854 xref: UMLS:C0489903 {source="ncithesaurus:Vascular_System"} is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0004535 {source="MA"} ! cardiovascular system property_value: IAO:0000116 "consider merging with vasculature" xsd:string property_value: UBPROP:0000001 "The cardiovascular and lymphatic systems, collectively[ncithesaurus:Vascular_System]." xsd:string {source="ncithesaurus:Vascular_System"} property_value: UBPROP:0000012 "in both MA and BTO, the arterial system and venous sytem are subtypes of the vascular system" xsd:string {external_ontology="MA"} [Term] id: UBERON:0007807 name: connecting stalk vasculature namespace: uberon def: "A vasculature that is part of a connecting stalk." [OBOL:automatic] synonym: "connecting stalk blood vessel" RELATED [] synonym: "connecting stalk blood vessels" EXACT [EHDAA2:0000313] synonym: "vasculature of connecting stalk" RELATED [] xref: EHDAA2:0000313 is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0008267 name: left supracardinal vein namespace: uberon def: "The left thoracic supracardinal vein loses its connection with the left posterior cardinal veins and left sinus horn and subsequently drains into the right supracardinal system." [ISBN:0443065837] xref: http://www.snomedbrowser.com/Codes/Details/361449001 is_a: UBERON:0006300 ! supracardinal vein [Term] id: UBERON:0008268 name: right supracardinal vein namespace: uberon def: "The right supracardinal vein loses its connection with the posterior cardinal vein and makes a new anastomosis with the segments of the superior vena cava derived from the anterior cardinal vein, becoming the azygos vein." [ISBN:0443065837] xref: EHDAA2:0004539 xref: http://www.snomedbrowser.com/Codes/Details/361450001 is_a: UBERON:0006300 ! supracardinal vein [Term] id: UBERON:0008307 name: heart endothelium namespace: uberon def: "An endothelium that is part of a heart [Automatically generated definition]." [OBOL:automatic] synonym: "cardiac endothelium" RELATED [BTO:0004293] xref: BTO:0004293 is_a: UBERON:0004852 ! cardiovascular system endothelium relationship: part_of UBERON:0000948 ! heart property_value: IAO:0000232 "this class includes any endothelia that are part of the heart. This might include the endocardial epithelia, as well as endothelia of vessels that are considered strictly part of the heart (e.g. outflow tract). As a grouping class, this may lack utility, and pending review this class may be obsoleted. For annotation consider a more specific class." xsd:string [Term] id: UBERON:0008311 name: penile bulb artery namespace: uberon def: "A short vessel of large caliber which arises from the internal pudendal between the two layers of fascia of the urogenital diaphragm; it passes medialward, pierces the inferior fascia of the urogenital diaphragm, and gives off branches which ramify in the bulb of the urethra and in the posterior part of the corpus spongiosum. It gives off a small branch to the bulbo-urethral gland." [http://en.wikipedia.org/wiki/Bulbourethral_artery] synonym: "arteria bulbi penis" EXACT [BTO:0005087] synonym: "artery of bulb of penis" EXACT [FMA:20864] synonym: "bulbourethral artery" RELATED [BTO:0005087] xref: BTO:0005087 xref: Bulbourethral:artery xref: FMA:20864 xref: http://www.snomedbrowser.com/Codes/Details/293338009 is_a: UBERON:0003835 ! abdominal segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0007315 ! internal pudendal artery relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery [Term] id: UBERON:0008320 name: common penile artery namespace: uberon def: "The artery that serves blood to the penis. It subdivides into three arteries, the bulbourethral artery, the dorsal artery of the penis and the cavernosal artery." [http://en.wikipedia.org/wiki/Penile_artery] synonym: "artery of penis" RELATED [FMA:66318] synonym: "penile artery" RELATED [BTO:0005085] xref: BTO:0005085 xref: FMA:66318 xref: http://www.snomedbrowser.com/Codes/Details/282044005 xref: Penile:artery is_a: UBERON:0004573 {source="FMA"} ! systemic artery is_a: UBERON:0036269 ! penis blood vessel property_value: IAO:0000116 "TODO - split generic structure from arterial tree" xsd:string [Term] id: UBERON:0008321 name: deep artery of penis namespace: uberon def: "The deep artery of the penis (artery to the corpus cavernosum), one of the terminal branches of the internal pudendal, arises from that vessel while it is situated between the two fascia of the urogenital diaphragm (deep perineal pouch). It pierces the inferior fascia, and, entering the crus penis obliquely, runs forward in the center of the corpus cavernosum penis, to which its branches are distributed." [http://en.wikipedia.org/wiki/Deep_artery_of_the_penis] synonym: "arteria cavernosa penis" RELATED [BTO:0005086] synonym: "arteria profunda penis" EXACT [BTO:0005086] synonym: "arteria profunda penis" RELATED LATIN [http://en.wikipedia.org/wiki/Deep_artery_of_the_penis] synonym: "cavernosal artery" RELATED [BTO:0005086] synonym: "deep penile artery" EXACT [FMA:19794] xref: BTO:0005086 xref: FMA:19794 xref: http://en.wikipedia.org/wiki/Deep_artery_of_the_penis xref: http://www.snomedbrowser.com/Codes/Details/244293007 is_a: UBERON:0003835 ! abdominal segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0007315 ! internal pudendal artery relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery relationship: part_of UBERON:0035551 ! deep vasculature property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray543.png [Term] id: UBERON:0008322 name: deep artery of clitoris namespace: uberon def: "The deep artery of clitoris is a branch of the internal pudendal artery." [http://en.wikipedia.org/wiki/Deep_artery_of_clitoris] synonym: "arteria profunda clitoridis" RELATED LATIN [http://en.wikipedia.org/wiki/Deep_artery_of_clitoris] xref: FMA:20870 xref: http://en.wikipedia.org/wiki/Deep_artery_of_clitoris xref: http://www.snomedbrowser.com/Codes/Details/244297008 is_a: UBERON:0003835 ! abdominal segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0007315 ! internal pudendal artery relationship: part_of UBERON:0035551 ! deep vasculature [Term] id: UBERON:0008323 name: dorsal artery of clitoris namespace: uberon def: "The dorsal artery of clitoris is a branch of the internal pudendal artery." [http://en.wikipedia.org/wiki/Dorsal_artery_of_clitoris] xref: FMA:20867 xref: http://en.wikipedia.org/wiki/Dorsal_artery_of_clitoris xref: http://www.snomedbrowser.com/Codes/Details/244298003 is_a: UBERON:0003835 ! abdominal segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0007315 ! internal pudendal artery [Term] id: UBERON:0008339 name: microvascular endothelium namespace: uberon xref: BTO:0003122 is_a: UBERON:0004852 {source="BTO"} ! cardiovascular system endothelium [Term] id: UBERON:0008783 name: dorsal venous arch namespace: uberon def: "The dorsal venous arch of the foot is a superficial vein that connects the small saphenous vein and the great saphenous vein. Anatomically, it is defined by where the dorsal veins of the first and fifth digit, respectively, meet the great saphenous vein and small saphenous vein." [http://en.wikipedia.org/wiki/Dorsal_venous_arch_of_the_foot] synonym: "arcus venosus dorsalis pedis" EXACT [http://en.wikipedia.org/wiki/Dorsal_venous_arch_of_the_foot] synonym: "arcus venosus dorsalis pedis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_venous_arch_of_the_foot] synonym: "dorsal venous arch of foot" EXACT [FMA:44356] xref: EMAPA:37521 {source="MA:th"} xref: FMA:44356 xref: http://en.wikipedia.org/wiki/Dorsal_venous_arch_of_the_foot xref: http://www.snomedbrowser.com/Codes/Details/231189006 xref: MA:0002110 is_a: UBERON:0001638 {source="MA"} ! vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4e/Gray581.png [Term] id: UBERON:0008886 name: pulmonary vascular system namespace: uberon def: "The part of the cardiovascular system consisting of all pulmonary arteries and all pulmonary veins." [http://en.wikipedia.org/wiki/Pulmonary_circulation, ISBN:0073040584] synonym: "pulmonary circulatory system" EXACT [FMA:45621] synonym: "pulmonary system" EXACT [ISBN:0073040584] xref: FMA:45621 xref: Pulmonary:circulation is_a: UBERON:0007798 {source="Obol"} ! vascular system relationship: has_part UBERON:0002012 ! pulmonary artery relationship: has_part UBERON:0002016 ! pulmonary vein property_value: UBPROP:0000001 "Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs.[FMA]" xsd:string {ontology="FMA", source="FMA:45621"} [Term] id: UBERON:0008887 name: rectal venous plexus namespace: uberon def: "The hemorrhoidal plexus (or rectal venous plexus) surrounds the rectum, and communicates in front with the vesical venous plexus in the male, and the uterovaginal plexus in the female. A free communication between the portal and systemic venous systems is established through the hemorrhoidal plexus." [http://en.wikipedia.org/wiki/Rectal_venous_plexus] synonym: "haemorrhoidal plexus" RELATED [http://en.wikipedia.org/wiki/Rectal_venous_plexus] synonym: "hemorrhoidal plexus" RELATED [http://en.wikipedia.org/wiki/Rectal_venous_plexus] synonym: "plexus haemorrhoidalis" RELATED LATIN [http://en.wikipedia.org/wiki/Rectal_venous_plexus] synonym: "plexus venosus rectalis" RELATED LATIN [http://en.wikipedia.org/wiki/Rectal_venous_plexus] xref: FMA:18933 xref: http://en.wikipedia.org/wiki/Rectal_venous_plexus xref: http://linkedlifedata.com/resource/umls/id/C0226766 xref: http://www.snomedbrowser.com/Codes/Details/303051005 xref: NCIT:C32728 xref: UMLS:C0226766 {source="ncithesaurus:Hemorrhoidal_Plexus"} is_a: UBERON:0001593 {source="FMA"} ! venous plexus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/69/Gray587.png [Term] id: UBERON:0008888 name: vesical venous plexus namespace: uberon def: "The vesical plexus envelops the lower part of the bladder and the base of the prostate and communicates with the pudendal and prostatic plexuses. It is drained, by means of several vesical veins, into the hypogastric veins." [http://en.wikipedia.org/wiki/Vesical_venous_plexus] synonym: "plexus venosus vesicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Vesical_venous_plexus] xref: FMA:18934 xref: http://en.wikipedia.org/wiki/Vesical_venous_plexus xref: http://www.snomedbrowser.com/Codes/Details/31510008 is_a: UBERON:0001593 {source="FMA"} ! venous plexus is_a: UBERON:0002201 ! vasculature of trunk relationship: part_of UBERON:0002460 ! vesical vein relationship: tributary_of UBERON:0002460 ! vesical vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png [Term] id: UBERON:0008889 name: uterine venous plexus namespace: uberon def: "The uterine plexuses lie along the sides and superior angles of the uterus between the two layers of the broad ligament, and communicate with the ovarian and vaginal plexuses. They are drained by a pair of uterine veins on either side: these arise from the lower part of the plexuses, opposite the external orifice of the uterus, and open into the corresponding hypogastric vein." [http://en.wikipedia.org/wiki/Uterine_venous_plexus] synonym: "plexus venosus uterinus" RELATED LATIN [http://en.wikipedia.org/wiki/Uterine_venous_plexus] synonym: "uterine plexus" RELATED [http://en.wikipedia.org/wiki/Uterine_venous_plexus] xref: FMA:29712 xref: http://en.wikipedia.org/wiki/Uterine_venous_plexus xref: http://www.snomedbrowser.com/Codes/Details/294553007 is_a: UBERON:0001593 {source="FMA"} ! venous plexus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png [Term] id: UBERON:0008998 name: vasculature of brain namespace: uberon alt_id: UBERON:0005284 def: "System pertaining to blood vessels in the brain." [BTO:0003840] subset: efo_slim synonym: "brain vasculature" EXACT [] synonym: "cerebrovascular system" EXACT [BTO:0003840] synonym: "intracerebral vasculature" EXACT [FMA:61935] xref: BTO:0003840 xref: EFO:0003491 xref: EMAPA:35186 xref: FMA:242007 xref: FMA:61935 xref: http://www.snomedbrowser.com/Codes/Details/362029003 xref: TAO:0000099 xref: ZFA:0000099 is_a: UBERON:0006876 ! vasculature of organ is_a: UBERON:0036303 ! vasculature of central nervous system [Term] id: UBERON:0009007 name: superficial inguinal lymph node namespace: uberon def: "A group of 12-20 lymph nodes that lie in the subcutaneous tissue below the inguinal ligament and along the terminal part of the great saphenous vein; they drain the skin and subcutaneous tissue of the lower abdominal wall, perineum, buttocks, external genitalia, and lower limbs." [BTO:0004549] synonym: "lymph node of Cloquet" EXACT [FMA:5036] synonym: "lymph node of Rosenmuller" EXACT [FMA:5036] synonym: "nodi lymphatici inguinales superficiali" RELATED PLURAL [] synonym: "nodus lymphaticus inguinalis superficialis" EXACT LATIN [FMA:5036] synonym: "superficial inguinal node" EXACT [FMA:5036] xref: BTO:0004549 xref: FMA:5036 xref: http://en.wikipedia.org/wiki/Superficial_inguinal_lymph_nodes xref: http://www.snomedbrowser.com/Codes/Details/113340006 is_a: UBERON:0015917 ! superficial lymph node [Term] id: UBERON:0009025 name: gastroepiploic artery namespace: uberon def: "One of two (right and left) arteries along the greater curvature of the stomach that supply blood to the greater omentum and stomach." [NCIT:C52857] subset: grouping_class xref: EMAPA:37082 {source="MA:th"} xref: Gastroepiploic:artery xref: http://linkedlifedata.com/resource/umls/id/C0447070 xref: http://www.snomedbrowser.com/Codes/Details/261401008 xref: MA:0001962 xref: MESH:D024405 xref: NCIT:C52857 xref: UMLS:C0447070 {source="ncithesaurus:Gastroepiploic_Artery"} is_a: UBERON:0001637 {source="MA"} ! artery is_a: UBERON:0003497 ! abdomen blood vessel [Term] id: UBERON:0009026 name: iliac circumflex artery namespace: uberon def: "One of two (deep circumflex and superficial circumflex) iliac arteries that supply the lower abdomen, inguinal lymph nodes, sartorius, and tensor fasciae latae." [ncithesaurus:Circumflex_Iliac_Artery] xref: EMAPA:37084 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C0447101 xref: http://www.snomedbrowser.com/Codes/Details/244327004 xref: MA:0001975 xref: NCIT:C52863 xref: UMLS:C0447101 {source="ncithesaurus:Circumflex_Iliac_Artery"} is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009027 name: vesical artery namespace: uberon def: "An artery that supplies blood to the urinary bladder." [http://orcid.org/0000-0002-6601-2165] synonym: "arteria vesicali" EXACT LATIN [] synonym: "vesical arteries" EXACT PLURAL [] xref: EMAPA:37131 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/244307000 xref: MA:0002078 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009029 name: pudendal vein namespace: uberon synonym: "pudic vein" RELATED [] xref: EMAPA:37184 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/395225000 xref: MA:0002202 is_a: UBERON:0001638 {source="MA"} ! vein is_a: UBERON:0003520 ! pelvis blood vessel [Term] id: UBERON:0009030 name: left pulmonary vein namespace: uberon def: "Vein that drains left lung and returns blood to the heart." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37165 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C0226670 xref: http://www.snomedbrowser.com/Codes/Details/304057004 xref: MA:0002207 xref: NCIT:C48946 xref: UMLS:C0226670 {source="ncithesaurus:Left_Pulmonary_Vein"} is_a: UBERON:0002016 ! pulmonary vein property_value: UBPROP:0000001 "A vein that returns oxygenated blood from the left lung to the left atrium of the heart[ncithesaurus:Left_Pulmonary_Vein]." xsd:string {source="ncithesaurus:Left_Pulmonary_Vein"} [Term] id: UBERON:0009032 name: right pulmonary vein namespace: uberon def: "Vein that drains right lung and returns blood to the heart." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37379 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C0226669 xref: http://www.snomedbrowser.com/Codes/Details/304056008 xref: MA:0002208 xref: NCIT:C48947 xref: UMLS:C0226669 {source="ncithesaurus:Right_Pulmonary_Vein"} is_a: UBERON:0002016 ! pulmonary vein property_value: UBPROP:0000001 "A vein that returns oxygenated blood from the right lung to the left atrium of the heart[ncithesaurus:Right_Pulmonary_Vein]." xsd:string {source="ncithesaurus:Right_Pulmonary_Vein"} [Term] id: UBERON:0009040 name: deep circumflex iliac artery namespace: uberon def: "The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone." [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery] synonym: "arteria circumflexa ilium profunda" EXACT [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery] synonym: "arteria circumflexa ilium profunda" RELATED LATIN [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex" RELATED [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex artery" RELATED [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery] xref: FMA:20687 xref: http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery xref: http://linkedlifedata.com/resource/umls/id/C0226405 xref: http://www.snomedbrowser.com/Codes/Details/181353005 xref: NCIT:C32432 xref: UMLS:C0226405 {source="ncithesaurus:Deep_Circumflex_Iliac_Artery"} is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009026 ! iliac circumflex artery intersection_of: UBERON:0009026 ! iliac circumflex artery intersection_of: part_of UBERON:0035551 ! deep vasculature relationship: branching_part_of UBERON:0001308 {source="FMA"} ! external iliac artery relationship: part_of UBERON:0001308 {source="FMA"} ! external iliac artery relationship: part_of UBERON:0035551 ! deep vasculature property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/07/Gray586.png property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/74/Gray586.png [Term] id: UBERON:0009041 name: superficial circumflex iliac artery namespace: uberon def: "The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries." [http://en.wikipedia.org/wiki/Superficial_circumflex_iliac_artery] synonym: "arteria circumflexa ilium superficialis" EXACT [http://en.wikipedia.org/wiki/Superficial_iliac_circumflex_artery] synonym: "iliac circumflex artery" RELATED [http://en.wikipedia.org/wiki/Superficial_iliac_circumflex_artery] synonym: "superficial circumflex iliac artery" RELATED [http://en.wikipedia.org/wiki/Superficial_iliac_circumflex_artery] xref: FMA:20737 xref: http://en.wikipedia.org/wiki/Superficial_circumflex_iliac_artery xref: http://linkedlifedata.com/resource/umls/id/C0738891 xref: NCIT:C52864 xref: UMLS:C0738891 {source="ncithesaurus:Superficial_Circumflex_Iliac_Artery"} is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009026 ! iliac circumflex artery intersection_of: UBERON:0009026 ! iliac circumflex artery intersection_of: part_of UBERON:0035549 ! vasculature of integument relationship: branching_part_of UBERON:0002060 {source="FMA"} ! femoral artery relationship: part_of UBERON:0002060 ! femoral artery relationship: part_of UBERON:0035549 ! vasculature of integument property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png [Term] id: UBERON:0009042 name: prostatic venous plexus namespace: uberon def: "The prostatic veins form a well-marked prostatic plexus which lies partly in the fascial sheath of the prostate and partly between the sheath and the prostatic capsule. It communicates with the pudendal and vesical plexuses." [http://en.wikipedia.org/wiki/Prostatic_venous_plexus] synonym: "plexus venosus prostaticus" RELATED LATIN [http://en.wikipedia.org/wiki/Prostatic_venous_plexus] synonym: "pudendal venous plexus" RELATED [FMA:29711] xref: FMA:29711 xref: http://en.wikipedia.org/wiki/Prostatic_venous_plexus xref: http://www.snomedbrowser.com/Codes/Details/303052003 is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0006876 ! vasculature of organ property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png [Term] id: UBERON:0009044 name: pudendal venous plexus namespace: uberon def: "The pudendal plexus (vesicoprostatic plexus) lies behind the arcuate pubic ligament and the lower part of the pubic symphysis, and in front of the bladder and prostate. Its chief tributary is the deep dorsal vein of the penis, but it also receives branches from the front of the bladder and prostate. It communicates with the vesical plexus and with the internal pudendal vein and drains into the vesical and hypogastric veins." [http://en.wikipedia.org/wiki/Pudendal_plexus_(veins)] xref: http://en.wikipedia.org/wiki/Pudendal_plexus_(veins) xref: http://www.snomedbrowser.com/Codes/Details/65326006 is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0002201 ! vasculature of trunk [Term] id: UBERON:0009046 name: inferior external pudendal vein namespace: uberon synonym: "inferior external pudic vein" RELATED [] xref: EMAPA:37155 {source="MA:th"} xref: MA:0002203 is_a: UBERON:0018253 ! external pudendal vein [Term] id: UBERON:0009047 name: superior external pudendal vein namespace: uberon synonym: "superior external pudic vein" RELATED [] xref: EMAPA:37192 {source="MA:th"} xref: MA:0002204 is_a: UBERON:0018253 ! external pudendal vein [Term] id: UBERON:0009048 name: deep external pudendal vein namespace: uberon synonym: "deep external pudic vein" RELATED [] xref: FMA:44488 is_a: UBERON:0018253 ! external pudendal vein is_a: UBERON:0035552 ! deep vein intersection_of: UBERON:0018253 ! external pudendal vein intersection_of: part_of UBERON:0035551 ! deep vasculature [Term] id: UBERON:0009049 name: superficial external pudendal vein namespace: uberon synonym: "superficial external pudic vein" RELATED [] xref: FMA:21377 is_a: UBERON:0018253 ! external pudendal vein is_a: UBERON:0035550 ! superficial vein intersection_of: UBERON:0018253 ! external pudendal vein intersection_of: part_of UBERON:0035549 ! vasculature of integument [Term] id: UBERON:0009054 name: open circulatory system namespace: uberon comment: The Open Circulatory System is a system in which fluid (called hemolymph) in a cavity called the hemocoel bathes the organs directly with oxygen and nutrients and there is no distinction between blood and interstitial fluid; this combined fluid is called hemolymph or haemolymph is_a: UBERON:0001009 {source="GO"} ! circulatory system [Term] id: UBERON:0009055 name: closed circulatory system namespace: uberon is_a: UBERON:0001009 {source="GO"} ! circulatory system property_value: IAO:0000116 "consider merging with cardiovascular system?" xsd:string property_value: UBPROP:0000008 "The circulatory systems of all vertebrates, as well as of annelids (for example, earthworms) and cephalopods (squid and octopus) are closed, just as in humans. Still, the systems of fish, amphibians, reptiles, and birds show various stages of the evolution of the circulatory system" xsd:string [Term] id: UBERON:0009056 name: two-pass circulatory system namespace: uberon def: "A closed circulatory system in which blood passes twice through the heart to supply the body once." [GO:0035905, http://en.wikipedia.org/wiki/Double_circulatory_system] xref: http://en.wikipedia.org/wiki/Double_circulatory_system is_a: UBERON:0009055 ! closed circulatory system [Term] id: UBERON:0009057 name: one-pass circulatory system namespace: uberon def: "A closed circulatory system in which blood passes once through the heart to supply the body once." [GO:0035907] is_a: UBERON:0009055 ! closed circulatory system [Term] id: UBERON:0009089 name: inner medulla vasa recta descending limb namespace: uberon xref: KUPO:0001003 relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta property_value: UBPROP:0000012 "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medullar parallel to the descending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009090 name: outer medulla vasa recta descending limb namespace: uberon xref: KUPO:0001004 relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta property_value: UBPROP:0000012 "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medullar parallel to the descending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009091 name: vasa recta ascending limb namespace: uberon xref: KUPO:0001005 relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta property_value: UBPROP:0000012 "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the ascending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009092 name: inner medulla vasa recta ascending limb namespace: uberon xref: KUPO:0001006 relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta property_value: UBPROP:0000012 "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medulla parallel to the ascending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009093 name: outer medulla vasa recta ascending limb namespace: uberon xref: KUPO:0001007 relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta property_value: UBPROP:0000012 "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medulla parallel to the ascending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009129 name: right atrium endocardium namespace: uberon def: "Endocardium that is part of the right atrium." [http://orcid.org/0000-0002-6601-2165] synonym: "endocardium of right atrium" EXACT [FMA:7281] synonym: "right atrial endocardium" EXACT [FMA:7281] synonym: "right atrium endocardial tissue" RELATED [VHOG:0001228] xref: EHDAA2:0000274 xref: FMA:7281 xref: http://www.snomedbrowser.com/Codes/Details/3194006 xref: NCIT:C102339 xref: VHOG:0001228 is_a: UBERON:0002166 ! endocardium of atrium intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002078 ! right cardiac atrium relationship: develops_from UBERON:0005092 {source="EHDAA2"} ! right horn of sinus venosus relationship: part_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0006218 {source="EHDAA2"} ! common atrial chamber [Term] id: UBERON:0009138 name: right common cardinal vein namespace: uberon synonym: "common cardinal vein right" EXACT [EHDAA2:0004535] xref: EHDAA2:0004535 xref: FMA:70310 xref: http://www.snomedbrowser.com/Codes/Details/361507009 is_a: UBERON:0002064 {source="FMA"} ! common cardinal vein property_value: UBPROP:0000008 "only a vestige of the right duct in the adult hagfish (21)[PMID:20959416, S1]" xsd:string [Term] id: UBERON:0009139 name: right posterior cardinal vein namespace: uberon alt_id: UBERON:0013123 def: "A posterior cardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] synonym: "posterior cardinal vein right" EXACT [EHDAA2:0004536] synonym: "right postcardinal vein" EXACT [FMA:70315] xref: EHDAA2:0004536 xref: FMA:70315 xref: http://www.snomedbrowser.com/Codes/Details/361505001 is_a: UBERON:0002065 ! posterior cardinal vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0009140 name: right subcardinal vein namespace: uberon def: "A subcardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] synonym: "subcardinal vein right" EXACT [EHDAA2:0004538] xref: EHDAA2:0004538 xref: http://www.snomedbrowser.com/Codes/Details/361452009 is_a: UBERON:0006296 ! subcardinal vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0009141 name: craniocervical region vein namespace: uberon def: "A vein that is part of a craniocervical region." [OBOL:automatic] synonym: "craniocervical vein" EXACT [] synonym: "head and neck veins" EXACT [EHDAA2:0004542] synonym: "vein of head and neck" EXACT [] xref: EHDAA2:0004542 xref: http://www.snomedbrowser.com/Codes/Details/32945007 is_a: UBERON:0013140 ! systemic vein [Term] id: UBERON:0009149 name: foramen primum namespace: uberon def: "opening in the septum primum between the two atria of the embryonic heart[TMD]." [http://en.wikipedia.org/wiki/Primary_interatrial_foramen, http://medical-dictionary.thefreedictionary.com/foramen+primum] synonym: "interatrial foramen primum" EXACT [http://en.wikipedia.org/wiki/Primary_interatrial_foramen] synonym: "ostium primum" EXACT [http://medical-dictionary.thefreedictionary.com/foramen+primum] synonym: "primary interatrial foramen" EXACT [http://en.wikipedia.org/wiki/Primary_interatrial_foramen] xref: EHDAA2:0001826 xref: EMAPA:17012 xref: http://en.wikipedia.org/wiki/Primary_interatrial_foramen xref: http://linkedlifedata.com/resource/umls/id/C1517292 xref: http://www.snomedbrowser.com/Codes/Details/308852002 xref: NCIT:C34178 xref: UMLS:C1517292 {source="ncithesaurus:Foramen_Primum"} xref: VHOG:0001470 relationship: part_of UBERON:0004154 ! atrial septum primum property_value: UBPROP:0000001 "First of the two openings to perforate the septum primum between the two atria of the embryonic heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001470", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/foramen"} property_value: UBPROP:0000003 "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether. [ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620]; [about heart development] In the various tetrapod classes ontogenetic events essentially recapitulate the phylogenetic stages.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001470", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0721676678 p.433"} [Term] id: UBERON:0009202 name: vasa recta descending limb namespace: uberon xref: KUPO:0001002 relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta property_value: UBPROP:0000012 "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the descending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009536 name: vascular element of left lung namespace: uberon def: "A vascular plexus that is part of a left lung." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000963 xref: EMAPA:17660 is_a: UBERON:0000102 ! lung vasculature is_a: UBERON:0005629 ! vascular plexus [Term] id: UBERON:0009537 name: vascular element of right lung namespace: uberon def: "A vascular plexus that is part of a right lung." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0001757 xref: EMAPA:17668 is_a: UBERON:0000102 ! lung vasculature is_a: UBERON:0005629 ! vascular plexus [Term] id: UBERON:0009548 name: hepatic sinusoid of left of lobe of liver namespace: uberon def: "A hepatic sinusoid that is part of a left lobe of liver." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "left lobe hepatic sinusoids" EXACT [VHOG:0000709] xref: EHDAA2:0001001 xref: EMAPA:18309 xref: VHOG:0000709 is_a: UBERON:0001281 ! hepatic sinusoid [Term] id: UBERON:0009549 name: hepatic sinusoid of right of lobe of liver namespace: uberon def: "A hepatic sinusoid that is part of a right lobe of liver." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "right lobe hepatic sinusoids" EXACT [VHOG:0000710] xref: EHDAA2:0001009 xref: EMAPA:18316 xref: VHOG:0000710 is_a: UBERON:0001281 ! hepatic sinusoid [Term] id: UBERON:0009654 name: alveolar artery namespace: uberon def: "A branch of the maxillary artery that is found in the gingiva, premolars, and molars." [ncithesaurus:Alveolar_Artery] xref: EMAPA:37069 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C1706783 xref: MA:0001913 xref: NCIT:C52848 xref: UMLS:C1706783 {source="ncithesaurus:Alveolar_Artery"} is_a: UBERON:0001637 {source="MA"} ! artery is_a: UBERON:0003496 ! head blood vessel relationship: branching_part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery property_value: IAO:0000116 "add child terms" xsd:string [Term] id: UBERON:0009655 name: auricular artery namespace: uberon def: "An artery that supplies oxygenated blood to the ear." [ncithesaurus:Auricular_Artery] xref: EMAPA:37072 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C1706858 xref: MA:0001918 xref: NCIT:C52849 xref: UMLS:C1706858 {source="ncithesaurus:Auricular_Artery"} is_a: UBERON:0001637 ! artery property_value: IAO:0000116 "add child terms" xsd:string [Term] id: UBERON:0009657 name: artery of lip namespace: uberon synonym: "labial artery" EXACT [MA:0001987] xref: EMAPA:37092 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C1708633 xref: MA:0001987 xref: NCIT:C52947 xref: UMLS:C1708633 {source="ncithesaurus:Labial_Artery"} is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009658 name: pancreaticoduodenal artery namespace: uberon def: "." [http://en.wikipedia.org/wiki/Pancreaticoduodenal_artery] synonym: "arteriae pancreaticoduodenales" EXACT LATIN [] synonym: "pancreatico-duodenal artery" EXACT [MA:0002013] xref: EMAPA:36529 xref: http://linkedlifedata.com/resource/umls/id/C1709455 xref: MA:0002013 xref: NCIT:C52992 xref: Pancreaticoduodenal:artery xref: UMLS:C1709455 {source="ncithesaurus:Pancreatico-Duodenal_Artery"} is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009659 name: spermatic artery namespace: uberon def: "A branch of the abdominal aorta that supplies oxygenated blood to the testis." [ncithesaurus:Spermatic_Artery] xref: http://linkedlifedata.com/resource/umls/id/C0226409 xref: MA:0002040 xref: NCIT:C33581 xref: UMLS:C0226409 {source="ncithesaurus:Spermatic_Artery"} is_a: UBERON:0001187 ! testicular artery property_value: IAO:0000116 "add child terms; consider merging with testicular artery" xsd:string [Term] id: UBERON:0009687 name: middle cardiac vein namespace: uberon def: "The middle cardiac vein commences at the apex of the heart, ascends in the posterior longitudinal sulcus, and ends in the coronary sinus near its right extremity." [http://en.wikipedia.org/wiki/Middle_cardiac_vein] synonym: "lesser cardiac vein" EXACT [FMA:4713] synonym: "posterior interventricular vein" EXACT [FMA:4713] synonym: "vena cardiaca media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_cardiac_vein] xref: EHDAA2:0004509 xref: FMA:4713 xref: http://en.wikipedia.org/wiki/Middle_cardiac_vein xref: http://linkedlifedata.com/resource/umls/id/C0226660 xref: http://www.snomedbrowser.com/Codes/Details/277729002 xref: NCIT:C12880 xref: UMLS:C0226660 {source="ncithesaurus:Middle_Cardiac_Vein"} is_a: UBERON:0004148 {source="FMA"} ! cardiac vein [Term] id: UBERON:0009688 name: posterior inferior cerebellar artery namespace: uberon def: "The posterior inferior cerebellar artery (PICA), the largest branch of the vertebral, is one of the three main arterial blood supplies for the cerebellum." [http://en.wikipedia.org/wiki/Posterior_inferior_cerebellar_artery] synonym: "posterior inferior cerebellar artery" EXACT [EHDAA2:0000660] xref: EHDAA2:0000660 xref: FMA:50518 xref: http://en.wikipedia.org/wiki/Posterior_inferior_cerebellar_artery xref: http://linkedlifedata.com/resource/umls/id/C0149573 xref: http://www.snomedbrowser.com/Codes/Details/244212001 xref: NCIT:C33362 xref: UMLS:C0149573 {source="ncithesaurus:Posterior_Inferior_Cerebellar_Artery"} is_a: UBERON:0035307 ! branch of vertebral artery disjoint_from: UBERON:0009689 {source="lexical"} ! anterior inferior cerebellar artery relationship: develops_from UBERON:0001535 {source="EHDAA2"} ! vertebral artery [Term] id: UBERON:0009689 name: anterior inferior cerebellar artery namespace: uberon def: "A basilar artery branch that supplies the anterior portion of the inferior surface of the cerebellum." [ncithesaurus:Anterior_Inferior_Cerebellar_Artery] xref: EHDAA2:0000587 xref: EMAPA:37070 {source="MA:th"} xref: FMA:50544 xref: http://en.wikipedia.org/wiki/Anterior_inferior_cerebellar_artery xref: http://linkedlifedata.com/resource/umls/id/C0226245 xref: http://www.snomedbrowser.com/Codes/Details/244213006 xref: NCIT:C32091 xref: UMLS:C0226245 {source="ncithesaurus:Anterior_Inferior_Cerebellar_Artery"} is_a: UBERON:0003472 ! cerebellar artery is_a: UBERON:0035489 ! branch of basilar artery relationship: develops_from UBERON:0001532 {source="EHDAA2"} ! internal carotid artery [Term] id: UBERON:0009712 name: endocardium of right ventricle namespace: uberon def: "Any endocardium that is part of the right ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] synonym: "endocardial lining of right ventricle" RELATED [EMAPA:17341] synonym: "right ventricle endocardial tissue" RELATED [VHOG:0001235] synonym: "right ventricle endocardium" EXACT [VHOG:0001235] synonym: "right ventricular endocardium" EXACT [FMA:9536] xref: EHDAA2:0002188 xref: EMAPA:17341 xref: FMA:9536 xref: http://www.snomedbrowser.com/Codes/Details/8911002 xref: NCIT:C102343 xref: VHOG:0001235 is_a: UBERON:0001081 ! endocardium of ventricle intersection_of: UBERON:0001081 ! endocardium of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: attaches_to UBERON:0006567 {source="FMA"} ! right ventricle myocardium relationship: develops_from UBERON:0004706 {source="EHDAA2"} ! bulbus cordis relationship: part_of UBERON:0002080 ! heart right ventricle property_value: UBPROP:0000001 "Endocardium of ventricle which is continuous tricuspid valve, pulmonary valve and with the tunica intima of the pulmonary trunk." xsd:string {source="FMA:9536"} [Term] id: UBERON:0009713 name: endocardium of left ventricle namespace: uberon def: "Any endocardium that is part of the left ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] synonym: "endocardial lining of left ventricle" RELATED [EMAPA:17338] synonym: "left ventricle endocardial tissue" RELATED [VHOG:0001233] synonym: "left ventricle endocardium" EXACT [VHOG:0001233] synonym: "left ventricular endocardium" EXACT [FMA:9559] xref: EHDAA2:0002182 xref: EMAPA:17338 xref: FMA:9559 xref: http://www.snomedbrowser.com/Codes/Details/191004004 xref: VHOG:0001233 is_a: UBERON:0001081 ! endocardium of ventricle intersection_of: UBERON:0001081 ! endocardium of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: attaches_to UBERON:0006566 {source="FMA"} ! left ventricle myocardium relationship: part_of UBERON:0002084 ! heart left ventricle property_value: UBPROP:0000001 "Endocardium of ventricle which is continuous with mitral valve, aortic valve, atrioventricular septum and the tunica intima of the aorta." xsd:string {source="FMA:9559"} [Term] id: UBERON:0009751 name: cardiac mesenchyme namespace: uberon def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures" [MP:0011264] subset: pheno_slim synonym: "heart mesenchyme" EXACT [EMAPA:36438] xref: EHDAA2:0004162 xref: EMAPA:36438 relationship: part_of UBERON:0000948 ! heart property_value: IAO:0000116 "decide whether to merge with cardiac mesoderm. In EHDAA2 this lasts CS12->unbounded, includes mesenchyme of individual components as parts" xsd:string [Term] id: UBERON:0009769 name: left common cardinal vein namespace: uberon synonym: "common cardinal vein left" EXACT [EHDAA2:0000304] xref: EHDAA2:0000304 xref: FMA:70311 xref: http://www.snomedbrowser.com/Codes/Details/361506000 is_a: UBERON:0002064 {source="FMA"} ! common cardinal vein property_value: UBPROP:0000008 "the left duct atrophies at metamorphosis in the lamprey (22)[PMID:20959416, S1]" xsd:string [Term] id: UBERON:0009771 name: left anterior cardinal vein namespace: uberon def: "A anterior cardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] synonym: "left precardinal vein" EXACT [FMA:70313] synonym: "precardinal vein left" EXACT [EHDAA2:0000127] xref: EHDAA2:0000127 xref: FMA:70313 xref: http://www.snomedbrowser.com/Codes/Details/361502003 is_a: UBERON:0003087 ! anterior cardinal vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0009772 name: right anterior cardinal vein namespace: uberon def: "A anterior cardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] synonym: "precardinal vein right" EXACT [EHDAA2:0004537] synonym: "right precardinal vein" EXACT [FMA:70312] xref: EHDAA2:0004537 xref: FMA:70312 xref: http://www.snomedbrowser.com/Codes/Details/361503008 is_a: UBERON:0003087 ! anterior cardinal vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0009779 name: cardiac muscle tissue of right auricle namespace: uberon def: "A cardiac muscle tissue that is part of a right atrium auricular region." [OBOL:automatic] synonym: "cardiac muscle of right auricular region" EXACT [EMAPA:16826] synonym: "right atrium auricular region heart muscle" EXACT [EHDAA2:0004169] synonym: "right auricular region cardiac muscle" RELATED [VHOG:0000611] synonym: "right auricular region myocardium" EXACT [VHOG:0000611] xref: EHDAA2:0004169 xref: EMAPA:16826 xref: EMAPA:17324 xref: FMA:84280 xref: VHOG:0000611 is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region is_a: UBERON:0003379 ! cardiac muscle of right atrium intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0006631 ! right atrium auricular region relationship: part_of UBERON:0006631 ! right atrium auricular region [Term] id: UBERON:0009780 name: cardiac muscle tissue of left auricle namespace: uberon def: "A cardiac muscle tissue that is part of a left atrium auricular region." [OBOL:automatic] synonym: "cardiac muscle of left auricular region" EXACT [EMAPA:16818] synonym: "left atrium auricular region heart muscle" EXACT [EHDAA2:0004168] xref: EHDAA2:0004168 xref: EMAPA:16818 xref: EMAPA:17318 xref: FMA:84281 is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region is_a: UBERON:0003380 ! cardiac muscle of left atrium intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0006630 ! left atrium auricular region relationship: part_of UBERON:0006630 ! left atrium auricular region property_value: seeAlso https://github.com/obophenotype/uberon/issues/321 [Term] id: UBERON:0009885 name: interlobar artery namespace: uberon def: "An artery that supplies a renal lobe." [http://en.wikipedia.org/wiki/Interlobar_arteries, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "arteriae interlobares renis" EXACT PLURAL [FMA:TA] synonym: "arteriae interlobares renis" RELATED LATIN [http://en.wikipedia.org/wiki/Interlobar_arteries] synonym: "interlobar arteries of kidney" RELATED [FMA:71637] synonym: "interlobar artery of kidney" EXACT [FMA:71637] synonym: "kidney interlobar artery" EXACT [] synonym: "renal interlobar artery" EXACT [MP:0011355] synonym: "set of interlobar arteries of kidney" RELATED [FMA:71637] xref: EMAPA:37091 {source="MA:th"} xref: FMA:71637 xref: http://www.snomedbrowser.com/Codes/Details/62802007 xref: Interlobar:arteries is_a: UBERON:0001637 ! artery property_value: depicted:by Kidney:PioM.png property_value: UBPROP:0000012 "FMA only has the set term" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0009887 name: interlobar vein namespace: uberon def: "The interlobar veins are veins of the renal circulation which drain the renal lobes." [http://en.wikipedia.org/wiki/Interlobar_veins] synonym: "interlobar vein of kidney" EXACT [FMA:71631] synonym: "interlobar veins of kidney" RELATED [FMA:71631] synonym: "set of interlobar veins of kidney" RELATED [FMA:71631] synonym: "venae interlobares renis" EXACT PLURAL [FMA:TA] synonym: "venae interlobares renis" RELATED LATIN [http://en.wikipedia.org/wiki/Interlobar_veins] xref: FMA:71631 xref: Interlobar:veins is_a: UBERON:0001638 ! vein property_value: depicted:by Kidney:PioM.png property_value: UBPROP:0000012 "FMA only has the set term" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0009966 name: internodal tract namespace: uberon def: "A conducting pathway in the conducting tissue of heart through which electrical activity spreads from the SA node to the AV node." [http://en.wikipedia.org/wiki/Electrical_conduction_system_of_the_heart] synonym: "interatrial conduction tract" EXACT [] synonym: "internodal conduction tract" EXACT [] synonym: "internodal fasciculus" EXACT [FMA:9479] synonym: "internodal tract muscle tissue" EXACT [FMA:9479] xref: FMA:9479 is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart property_value: IAO:0000116 "include 3 subtypes?" xsd:string property_value: IAO:0000232 "evidence is sparse [http://www.gpnotebook.co.uk/simplepage.cfm?ID=-483065798] There is some functional evidence for the existence of specialized conducting pathways within the atria (termed internodal tracts), although this is controversial" xsd:string {source="http://www.cvphysiology.com/Arrhythmias/A003.htm"} [Term] id: UBERON:0009967 name: spleen venous sinus namespace: uberon synonym: "sinus lienalis" EXACT LATIN [FMA:TA] synonym: "sinus splenicus" EXACT LATIN [FMA:TA] synonym: "splenic sinus" EXACT [FMA:62815] synonym: "venous sinus of red pulp of spleen" EXACT [FMA:62815] xref: EMAPA:37751 {source="MA:th"} xref: FMA:62815 xref: http://linkedlifedata.com/resource/umls/id/C1179415 xref: MA:0000761 xref: NCIT:C33605 xref: UMLS:C1179415 {source="ncithesaurus:Splenic_Sinus"} is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0006615 {source="cjm"} ! venous sinus property_value: seeAlso UBERON:0003910 [Term] id: UBERON:0009968 name: primitive superior sagittal sinus namespace: uberon xref: EHDAA2:0001527 xref: EHDAA:9876 xref: EMAPA:18636 is_a: UBERON:0006615 {source="cjm"} ! venous sinus relationship: develops_from UBERON:0006282 {source="EHDAA2"} ! primary head vein relationship: part_of UBERON:0005486 {source="EHDAA2"} ! venous dural sinus property_value: IAO:0000116 "consider merging into developed structure" xsd:string [Term] id: UBERON:0009976 name: hypothalamo-hypophyseal system namespace: uberon def: "An intrinsic circulatory network that transports hormones from the median eminence of the hypothalamus to the adenohypophysis." [http://en.wikipedia.org/wiki/Hypophyseal_portal_system, ISBN:0471888893] synonym: "hypophyseal portal system" EXACT [http://en.wikipedia.org/wiki/Hypophyseal_portal_system] synonym: "hypothalamic hypophyseal portal system" EXACT [ISBN:0471888893] synonym: "hypothalamo hypophyseal system" RELATED [MESH:A06.407.747.357] synonym: "hypothalamo-hypophyseal system" RELATED [MESH:A06.407.747.357] synonym: "hypothalamohypophyseal portal system" EXACT [] synonym: "portal veins of hypophysis" RELATED [FMA:70860] synonym: "set of portal veins of hypophysis" RELATED [FMA:70860] synonym: "venae portales hypophysiales" EXACT [http://en.wikipedia.org/wiki/Hypophyseal_portal_system] synonym: "venae portales hypophysiales" RELATED LATIN [http://en.wikipedia.org/wiki/Hypophyseal_portal_system] xref: FMA:70860 xref: http://en.wikipedia.org/wiki/Hypophyseal_portal_system xref: http://linkedlifedata.com/resource/umls/id/C1512570 xref: MESH:A06.407.747.357 xref: NCIT:C32759 xref: UMLS:C1512570 {source="ncithesaurus:Hypothalamohypophyseal_Portal_System"} is_a: UBERON:0005806 ! portal system property_value: IAO:0000116 "we represent this structure strictly as a system of blood vessels (presumably in line with the FMA). It could also be extended to include neurons and fiber tracts, as per the MESH definition" xsd:string property_value: UBPROP:0000008 "in lampreys and teleost hormones enter the adenohypophysis by diffusion. ." xsd:string {source="WP"} property_value: UBPROP:0000009 "One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis). The hypothalamus is responsible for certain metabolic processes and other activities of the autonomic nervous system. It synthesizes and secretes certain neurohormones, often called hypothalamic-releasing hormones, and these in turn stimulate or inhibit the secretion of pituitary hormones. The hypothalamus controls body temperature, hunger, thirst, fatigue, sleep, and circadian cycles" xsd:string [Term] id: UBERON:0010018 name: spiral valve of conus arteriosus namespace: uberon def: "The spiral valve alternately blocks & unblocks the entrances to the left and right pulmonary arches (sending unoxygenated blood to the skin & lungs)." [http://people.eku.edu/ritchisong/342notes9.html] xref: AAO:0010251 xref: http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter21/medialib/Kardong_fig_12_29.html relationship: part_of UBERON:0003983 {source="AAO"} ! conus arteriosus property_value: UBPROP:0000008 "found in dipnoans and amphibians" xsd:string property_value: UBPROP:0000008 "The spiral valve is considered to have evolved from the right member of the four embryonic endocardial ridges (Goodrich, 1930 - via Morris 1974)" xsd:string [Term] id: UBERON:0010078 name: optic choroid vascular plexus namespace: uberon alt_id: ZFA:0005228 synonym: "capillary lamina of choroid" RELATED [XAO:0004176] synonym: "choriocapillaris" RELATED [XAO:0004176] synonym: "choroid vascular plexus" RELATED [] synonym: "choroid vasculature" RELATED [ZFA:0005094] synonym: "choroidal vascular plexus" RELATED [TAO:0005094] synonym: "CVP" EXACT ABBREVIATION [ZFA:0005094] synonym: "optic choroid vascular plexus" RELATED [XAO:0004176] xref: TAO:0005094 xref: XAO:0004176 xref: ZFA:0005094 is_a: UBERON:0002203 {source="ZFA"} ! vasculature of eye is_a: UBERON:0005629 {source="XAO"} ! vascular plexus relationship: part_of UBERON:0001776 {source="ZFA"} ! optic choroid property_value: IAO:0000116 "Consider merging with capillary layer. Consider choriocapillaris complex" xsd:string property_value: UBPROP:0000001 "A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruchs's membrane.[XAO:0004176]." xsd:string {source="XAO:0004176"} property_value: UBPROP:0000001 "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]." xsd:string {source="ZFA:0005094"} property_value: UBPROP:0000008 "The choroid of teleosts is a connective tissue layer rich in blood vessels, and one or two choroidal glands." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} [Term] id: UBERON:0010131 name: conducting tissue of heart namespace: uberon def: "Any portion of cardiac muscle tissue that is part of the conducting system of heart or the Purkinje fibers." [http://orcid.org/0000-0002-6601-2165] synonym: "specialized conducting tissue of heart" EXACT [FMA:83378] synonym: "specialized muscle tissue of heart" EXACT [FMA:83378] xref: EHDAA2:0004528 xref: FMA:83378 is_a: UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0010132 name: gastroduodenal artery namespace: uberon def: "A small blood vessel in the abdomen that supplies blood directly to the pylorus (distal part of the stomach) and proximal part of the duodenum, and indirectly to the pancreatic head (via the anterior and posterior superior pancreaticoduodenal arteries)." [http://en.wikipedia.org/wiki/Gastroduodenal_artery] synonym: "arteria gastroduodenalis" RELATED LATIN [http://en.wikipedia.org/wiki/Gastroduodenal_artery] xref: EHDAA2:0000310 xref: EHDAA:8574 xref: FMA:14775 xref: galen:GastroduodenalArtery xref: Gastroduodenal:artery xref: http://www.snomedbrowser.com/Codes/Details/244269002 is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0005436 {source="FMA"} ! common hepatic artery relationship: develops_from UBERON:0005436 {source="EHDAA2"} ! common hepatic artery relationship: part_of UBERON:0005436 ! common hepatic artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png [Term] id: UBERON:0010160 name: lumen of lymphatic vessel namespace: uberon def: "An anatomical cavity that surrounded_by a lymphatic vessel." [OBOL:automatic] synonym: "lumen of lymphatic duct" EXACT [FMA:59681] synonym: "lymphatic vessel lumen" EXACT [FMA:59681] xref: FMA:59681 relationship: luminal_space_of UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0010161 name: lumen of blood vessel namespace: uberon def: "An anatomical cavity that surrounded_by a blood vessel." [OBOL:automatic] synonym: "blood vessel lumen" EXACT [] xref: FMA:312610 xref: http://www.snomedbrowser.com/Codes/Details/91747007 relationship: luminal_space_of UBERON:0001981 ! blood vessel relationship: part_of UBERON:0001981 ! blood vessel [Term] id: UBERON:0010172 name: bulb of aorta namespace: uberon def: "The portion of the left ventricular outflow tract delineated by the sinotubular ridge superiorly and the bases of the valve leaflets inferiorly; it comprises the aortic sinuses, the aortic valve leaflets, the commissures, and the interleaflet triangles" [MP:0011572] subset: pheno_slim synonym: "aorta bulb" EXACT [MP:0011575] synonym: "aortic bulb" EXACT [FMA:3740] synonym: "aortic root" EXACT [MP:0011572] synonym: "bulb of ascending aorta" EXACT [FMA:3740] synonym: "bulbus aortae" EXACT LATIN [FMA:TA] synonym: "root of aorta" EXACT [FMA:3740] synonym: "supraaortic valve area" EXACT [FMA:3740] xref: BTO:0004695 xref: FMA:3740 xref: http://www.snomedbrowser.com/Codes/Details/362032000 relationship: contributes_to_morphology_of UBERON:0001496 ! ascending aorta relationship: part_of UBERON:0001496 {source="FMA"} ! ascending aorta property_value: UBPROP:0000001 "The dilated first part of the aorta containing the aortic semilunar valves and the aortic sinuses." xsd:string {source="http://medical-dictionary.thefreedictionary.com/aortic+bulb"} [Term] id: UBERON:0010173 name: sinotubular junction namespace: uberon def: "The point in the ascending aorta where the aortic sinuses end and the aorta becomes a tubular structure" [MP:0011572] subset: pheno_slim synonym: "sinotubular ridge" EXACT [MP:0011572] xref: EMAPA:37951 {source="MA:th"} relationship: contributes_to_morphology_of UBERON:0001496 ! ascending aorta relationship: part_of UBERON:0001496 {source="MP"} ! ascending aorta [Term] id: UBERON:0010174 name: Schweigger-Seidel sheath namespace: uberon def: "A phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen" [http://en.wikipedia.org/wiki/Schweigger-Seidel_sheath, PMCID:PMC3204613] xref: Schweigger-Seidel:sheath relationship: part_of UBERON:0001980 ! arteriole [Term] id: UBERON:0010175 name: nutrient foramen vein namespace: uberon def: "A vein or veins draining a bone and emerging from a nutrient foramen." [http://www.medilexicon.com/medicaldictionary.php?t=97392] synonym: "nutrient vein" EXACT [FMA:50780] synonym: "vena nutricia" RELATED LATIN [] xref: FMA:50780 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0010176 name: nutrient foramen artery namespace: uberon def: "The medullary or nutrient artery, usually accompanied by one or two veins, sends branches upward and downward to the bone marrow, which ramify in the medullary membrane, and give twigs to the adjoining canals." [http://en.wikipedia.org/wiki/Nutrient_artery] synonym: "a. nutricia" RELATED LATIN [http://en.wikipedia.org/wiki/Nutrient_artery] synonym: "a. nutriens" RELATED LATIN [http://en.wikipedia.org/wiki/Nutrient_artery] synonym: "aretria nutricia" RELATED LATIN [] synonym: "nutrient artery" EXACT [FMA:50779] xref: FMA:50779 xref: http://linkedlifedata.com/resource/umls/id/C0278431 xref: http://www.snomedbrowser.com/Codes/Details/337318006 xref: NCIT:C33189 xref: Nutrient:artery xref: UMLS:C0278431 {source="ncithesaurus:Nutrient_Artery"} is_a: UBERON:0004573 {source="FMA"} ! systemic artery [Term] id: UBERON:0010181 name: straight venules of kidney namespace: uberon def: "The straight venules of kidney are branches from the plexuses at the apices of the medullary pyramids, formed by the terminations of the arteriae rectae. They run outward in a straight course between the tubes of the medullary substance, and joining, as above stated, the interlobular veins, form venous arcades; these in turn unite and form veins which pass along the sides of the pyramids. Contains fenestrated capillaries." [http://en.wikipedia.org/wiki/Straight_venules_of_kidney] synonym: "set of straight venules of kidney" EXACT [FMA:72007] synonym: "venae rectae" RELATED [http://en.wikipedia.org/wiki/Straight_venules_of_kidney] synonym: "venulae rectae" RELATED [http://en.wikipedia.org/wiki/Straight_venules_of_kidney] synonym: "venulae rectae of kidney" EXACT [FMA:72007] synonym: "venulae rectae renis" EXACT LATIN [FMA:TA] synonym: "venulae rectae renis" RELATED LATIN [http://en.wikipedia.org/wiki/Straight_venules_of_kidney] synonym: "venulae recti" RELATED [http://en.wikipedia.org/wiki/Straight_venules_of_kidney] xref: FMA:72007 xref: http://en.wikipedia.org/wiki/Straight_venules_of_kidney xref: http://www.snomedbrowser.com/Codes/Details/245983001 is_a: UBERON:0005629 ! vascular plexus is_a: UBERON:0006544 ! kidney vasculature [Term] id: UBERON:0010189 name: right atrium venous valve namespace: uberon synonym: "right venous valve" RELATED [EHDAA2:0001762] xref: EHDAA2:0001762 xref: EMAPA:17010 xref: EMAPA:17328 xref: MA:0001872 is_a: UBERON:0005208 ! right atrium valve is_a: UBERON:0006675 ! venous valve intersection_of: UBERON:0006675 ! venous valve intersection_of: part_of UBERON:0002078 ! right cardiac atrium property_value: UBPROP:0000012 "part_of in EHDAA2. Only child in MA." xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0010190 name: pair of dorsal aortae namespace: uberon def: "the paired arterial structures of the embryo that supplies each developing somite via efferent segmental arteries; the dorsal aortae articulate with the umbilical arteries, which return mixed blood to the villi of the chorion for reoxygenation" [ISBN:0-914294-08-3, MP:0004787] subset: pheno_slim synonym: "paired dorsal aortae" EXACT [EHDAA2:0000410] xref: EHDAA2:0000410 xref: EMAPA:18606 xref: MA:0000476 relationship: has_part UBERON:0005805 ! dorsal aorta relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system [Term] id: UBERON:0010191 name: aortic system namespace: uberon xref: EHDAA2:0004512 relationship: part_of UBERON:0004571 {source="Wikipedia"} ! systemic arterial system [Term] id: UBERON:0010192 name: genital artery namespace: uberon def: "One of the laterally paired arteries that supply the gonads." [http://en.wikipedia.org/wiki/Gonadal_artery, ISBN:0073040584] synonym: "gonadal artery" EXACT [] xref: Gonadal:artery is_a: UBERON:0012254 ! abdominal aorta artery [Term] id: UBERON:0010193 name: renal portal vein namespace: uberon def: "A portal vein that empties into capillaries within the kidneys." [ISBN:0073040584] synonym: "renal portal veins" EXACT PLURAL [ZFA:0000577] xref: TAO:0000577 xref: ZFA:0000577 is_a: UBERON:0001638 {source="ZFA"} ! vein is_a: UBERON:0003513 ! trunk blood vessel relationship: part_of UBERON:0002201 {source="ZFA"} ! vasculature of trunk property_value: UBPROP:0000009 "function not well understood." xsd:string {source="ISBN:0073040584"} [Term] id: UBERON:0010194 name: hepatic portal system namespace: uberon def: "A portal system that begins in capillaries in the wall of the digestive tract and and runs as the hepatic portal vein to the liver." [ISBN:0073040584] synonym: "hepatic-portal system" EXACT [AAO:0010225] synonym: "portal system of liver" EXACT [] xref: AAO:0010225 is_a: UBERON:0005806 ! portal system property_value: UBPROP:0000001 "Part of the circulatory system which includes the ventral abdominal vein, pelvic veins, and portal vein and collects blood from the pelvic region, liver, gall bladder and stomach.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010225", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0010195 name: renal portal system namespace: uberon def: "A portal system that transports blood returning from capillary beds within tail or hindlimbs through paired renal portal veins that empty into capillaries within the kidneys." [ISBN:0073040584] synonym: "portal system of kidney" EXACT [] synonym: "renal-portal system" EXACT [AAO:0010518] xref: AAO:0010518 is_a: UBERON:0005806 ! portal system property_value: UBPROP:0000001 "Part of the circulatory system in which the veins of the hindlimb combine to form the pair Jacobson's veins which receive many small vesicles from the kidney and also collects blood from the oviducal vein.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010518", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000008 "present in all classes of vertebrates except mammals; the mammalian kidney has a low pressure vascular network that may be its counterpart" xsd:string {source="ISBN:0073040584"} property_value: UBPROP:0000009 "function not well understood" xsd:string [Term] id: UBERON:0010197 name: trunk of common carotid artery namespace: uberon def: "The initial part of the entire common carotid artery ending with the point where the artery bifurcates into an external carotid artery and an internal carotid artery." [https://orcid.org/0000-0002-6601-2165] synonym: "common carotid arterial trunk" EXACT [FMA:69323] synonym: "common carotid artery" RELATED INCONSISTENT [EHDAA2:0000306] xref: EHDAA2:0000306 xref: EMAPA:17855 xref: FMA:69323 is_a: UBERON:0005396 ! carotid artery segment relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches [Term] id: UBERON:0010198 name: carotid duct namespace: uberon def: "A segment of the embryonic dorsal aorta between points of juncture with the third and fourth arch arteries; it regresses early in development to allow the carotid axis to take its definitive appearance." [http://www.medilexicon.com/medicaldictionary.php?s=ductus+caroticus, MP:MP] subset: pheno_slim synonym: "ductus caroticus" EXACT [EMAPA:17006] xref: EMAPA:17006 xref: http://www.snomedbrowser.com/Codes/Details/340062006 is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004573 ! systemic artery relationship: continuous_with UBERON:0003120 ! pharyngeal arch artery 3 relationship: continuous_with UBERON:0003121 ! pharyngeal arch artery 4 relationship: part_of UBERON:0005805 ! dorsal aorta property_value: UBPROP:0000008 "In amphibians, closes at metamorphosis" xsd:string {source="ISBN:0073040584"} [Term] id: UBERON:0010204 name: tail vasculature namespace: uberon def: "A vasculature that is part of a post-anal tail." [OBOL:automatic] synonym: "post-vent vasculature" EXACT [ZFA:0005037] synonym: "tail vasculature" RELATED [ZFA:0005037] xref: TAO:0005037 xref: XAO:0004151 xref: ZFA:0005037 is_a: UBERON:0002049 ! vasculature property_value: UBPROP:0000012 "isa blood vessel in XAO" xsd:string {external_ontology="XAO"} [Term] id: UBERON:0010205 name: mesencephalic vein namespace: uberon def: "One of the several veins that drain the mesencephalon; the posterior ones are tributaries to the great cerebral vein; the lateral ones are tributaries to the basal vein. The main veins are: pontomesencephalic vein [TA] (vena pontomesencephalica [TA]), interpeduncular veins [TA] (venae interpedunculares [TA]), intercollicular vein [TA] (vena intercollicularis [TA]), and lateral mesencephalic vein [TA] (vena mesencephalica lateralis [TA])[MedLex]. The major vein of the midbrain, which crosses the midbrain medially to meet it's partner the mesencephalic artery[XAO]." [http://www.medilexicon.com/medicaldictionary.php?t=97378, XAO:0004174] synonym: "msv" RELATED [TAO:0005092] synonym: "vena mesencephalica" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] synonym: "venae mesencephalicae" EXACT PLURAL [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] xref: http://www.snomedbrowser.com/Codes/Details/43225002 xref: TAO:0005092 xref: XAO:0004174 xref: ZFA:0005092 is_a: UBERON:0001638 {source="XAO"} ! vein property_value: IAO:0000116 "review this term, check taxon scope; note FMA has specific subtypes" xsd:string [Term] id: UBERON:0010244 name: choroid tapetum lucidum namespace: uberon def: "A tapetum lucidum that is part of the choroid. The choroidal tapetum lucidum lies immediately adjacent to the choriocapillaris and external to the retinal epithelium" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] synonym: "choroidal tapetum lucidum" EXACT [] synonym: "tapetum choroideae" EXACT [BTO:0001828] xref: BTO:0001828 xref: Classification xref: http://www.snomedbrowser.com/Codes/Details/3034006 relationship: part_of UBERON:0001776 ! optic choroid property_value: UBPROP:0000012 "we make the assumption that the BTO class belongs here rather than with the parent; the other type is the retinal type" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0010246 name: choroidal guanine tapetum namespace: uberon def: "A choroid tapetum lucidum that is made of a palisade of cells containing stacks of flat hexagonal crystals of guanine" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] xref: Classification is_a: UBERON:0010244 ! choroid tapetum lucidum property_value: RO:0002175 NCBITaxon:7778 property_value: RO:0002175 NCBITaxon:7864 property_value: UBPROP:0000008 "A choroidal tapetum of reflecting cells lying immediately outside the choriocapillaris is formed in a few primitive teleosts." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502", taxon="NCBITaxon:32443"} property_value: UBPROP:0000008 "elasmobranchii (skates, rays, and sharks) and chimaeras" xsd:string {source="WP"} property_value: UBPROP:0000008 "The elasmobranch tapetum in Squalus and Scyliorhinus con- sists of sheets of 12-13 superposed guanine crystals in the choroid." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502", taxon="NCBITaxon:7778"} [Term] id: UBERON:0010247 name: choroidal tapetum cellulosum namespace: uberon def: "A choroid tapetum lucidum that consists of layers of cells containing organized, highly refractive crystals. These crystals are diverse in shape and makeup" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] comment: The choroidal stroma adjacent to the tapetum lucidum contains numerous small blood vessels that penetrate the tapetal layer to form a single-layered capillary network, known as the choriocapillaris, on the surface of the tapetum. The tapetum cellulosum is thus interposed between the large branching vessels in the choroid and the single layer of the choriocapillaris beneath the retinal epithelium[PMID:14738502] synonym: "choroid tapetum cellulosum" EXACT [] xref: Classification is_a: UBERON:0010244 ! choroid tapetum lucidum property_value: RO:0002175 NCBITaxon:33554 {editor="cjm", notes="most carnivores", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: RO:0002175 NCBITaxon:9721 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: RO:0002175 NCBITaxon:9989 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502", taxon="spotted cavy"} [Term] id: UBERON:0010248 name: choroidal tapetum fibrosum namespace: uberon def: "A choroid tapetum lucidum that is an array of extracellular fibers." [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] synonym: "fibrous tapetum" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/14738502, NCBITaxon:9845] xref: Classification is_a: UBERON:0010244 ! choroid tapetum lucidum property_value: RO:0002175 NCBITaxon:9788 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: RO:0002175 NCBITaxon:9845 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: UBPROP:0000008 "cows, sheep, goats and horses" xsd:string {source="WP"} [Term] id: UBERON:0010249 name: posterior meningeal artery namespace: uberon def: "The posterior meningeal artery are small vessels which are branches of the ascending pharyngeal artery which supply the dura mater. It passes through the mastoid foramen before entering the cranium via the jugular foramen." [http://en.wikipedia.org/wiki/Posterior_meningeal_artery] synonym: "arteria meningea posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_meningeal_artery] synonym: "meningeal branches of the ascending pharyngeal artery" RELATED [http://en.wikipedia.org/wiki/Posterior_meningeal_artery] synonym: "posterior meningeal arteries" RELATED PLURAL [http://en.wikipedia.org/wiki/Posterior_meningeal_artery] synonym: "terminal branch of ascending pharyngeal artery" EXACT [FMA:49503] xref: FMA:49503 xref: http://en.wikipedia.org/wiki/Posterior_meningeal_artery xref: http://linkedlifedata.com/resource/umls/id/C0221310 xref: NCIT:C33369 xref: UMLS:C0221310 {source="ncithesaurus:Posterior_Meningeal_Artery"} is_a: UBERON:0003474 ! meningeal artery disjoint_from: UBERON:0010251 {source="lexical"} ! anterior meningeal artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png [Term] id: UBERON:0010250 name: middle meningeal artery namespace: uberon def: "The middle meningeal artery is typically the third branch of the first part (retromandibular part) of the maxillary artery; one of the two terminal branches of the external carotid artery. After branching off the maxillary artery in the infratemporal fossa, it runs through the foramen spinosum to supply the dura mater and the calvaria. The middle meningeal artery is the largest of the three (paired) arteries which supply the meninges, the others being the anterior meningeal artery and the posterior meningeal artery. In approximately half of subjects it branches into an accessory meningeal artery. The middle meningeal artery runs beneath the pterion. It is vulnerable to injury at this point, where the skull is thin. Rupture of the artery may give rise to an epidural hematoma." [http://en.wikipedia.org/wiki/Middle_meningeal_artery] synonym: "arteria meningea media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_meningeal_artery] synonym: "arteria meningea media" RELATED [http://en.wikipedia.org/wiki/Middle_meningeal_artery] xref: FMA:49711 xref: http://en.wikipedia.org/wiki/Middle_meningeal_artery xref: http://www.snomedbrowser.com/Codes/Details/278100005 is_a: UBERON:0003474 ! meningeal artery relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Middle_meningeal_artery.png [Term] id: UBERON:0010251 name: anterior meningeal artery namespace: uberon def: "A meningeal branch to the dura mater arising from the anterior ethmoidal artery." [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery#Branches] synonym: "a. ethmoidalis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "anterior ethmoid arteries" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "anterior ethmoid artery" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "anterior meningeal arteries" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "anterior meningeal artery" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "anterior meningeal branch of anterior ethmoidal artery" EXACT [FMA:49993] synonym: "arteria ethmoidalis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "ramus meningeus anterior (arteria ethmoidalis anterioris)" EXACT LATIN [FMA:49993, FMA:TA] xref: Branches xref: FMA:49993 xref: http://linkedlifedata.com/resource/umls/id/C0226187 xref: http://www.snomedbrowser.com/Codes/Details/369327009 xref: NCIT:C32099 xref: UMLS:C0226187 {source="ncithesaurus:Anterior_Meningeal_Artery"} is_a: UBERON:0003474 ! meningeal artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0012318 {source="Wikipedia"} ! anterior ethmoidal artery relationship: part_of UBERON:0012318 ! anterior ethmoidal artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png property_value: IAO:0000116 "this needs checking as part of a general revision of the blood vessels and their branches - unclear if the anterior meningeal artery should be treated separately from the anterior ethmoidal artery (ie as a branch) or the same thing" xsd:string [Term] id: UBERON:0010260 name: umbilical blood vessel namespace: uberon def: "One of the three blood vessels, usually one large umbilical vein and two small umbilical arteries, buried within Wharton's jelly, that transport blood to and from the placenta, where exchange between the mother and fetus takes place; the umbilical vein carries oxygenated, nutrient-rich blood from the placenta to the fetus, and the umbilical arteries carry deoxygenated, nutrient-depleted blood from the fetus to the placenta." [MP:0003230] subset: pheno_slim synonym: "allantoic vessel" EXACT [Hymans:Hymans] synonym: "umbilical cord blood vessel" EXACT [] synonym: "umbilical cord blood vessels" RELATED PLURAL [] synonym: "umbilical vasculature" RELATED [] synonym: "umbilical vessel" EXACT [] xref: EMAPA:36493 xref: http://www.snomedbrowser.com/Codes/Details/408728001 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0010277 name: mesocardium namespace: uberon def: "The part of the embryonic mesentery which connects the embryonic heart with the body wall in front and the foregut behind." [http://medical-dictionary.thefreedictionary.com/mesocardium] subset: pheno_slim synonym: "cardiac mesentery" RELATED [EMAPA:16212] xref: EMAPA:16212 xref: MA:0000098 relationship: part_of UBERON:0003282 ! mesentery of heart relationship: surrounded_by UBERON:0001074 ! pericardial cavity property_value: IAO:0000116 "consider merging with heart mesentery" xsd:string property_value: UBPROP:0000007 "mesocardial" xsd:string [Term] id: UBERON:0010279 name: pericardial sinus namespace: uberon def: "There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. . The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery." [http://en.wikipedia.org/wiki/Pericardial_sinus] synonym: "oblique pericardial" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] synonym: "oblique pericardial sinus" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] synonym: "oblique sinus" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] synonym: "pericardial sinuses" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] synonym: "transverse pericardial" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] synonym: "transverse pericardial sinus" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] xref: http://www.snomedbrowser.com/Codes/Details/314273005 xref: Pericardial:sinus relationship: part_of UBERON:0001074 {source="FMA-abduced"} ! pericardial cavity relationship: part_of UBERON:0010277 {source="MA-abduced"} ! mesocardium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png [Term] id: UBERON:0010283 name: oblique pericardial sinus namespace: uberon def: "The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium.[WP,unvetted]." [http://en.wikipedia.org/wiki/Pericardial_sinus] synonym: "oblique sinus of pericardial cavity" EXACT [FMA:77133] xref: FMA:77133 xref: Pericardial:sinus is_a: UBERON:0010279 ! pericardial sinus [Term] id: UBERON:0010293 name: suprachoroid lamina namespace: uberon def: "On the external surface of the optic choroid is a thin membrane, the suprachoroid lamina, composed of delicate non-vascular lamellae-each lamella consisting of a network of fine elastic fibers among which are branched pigment cells." [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "fusca sclerae" RELATED [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "lamina fusca of sclera" RELATED [FMA:58368] synonym: "lamina fusca sclerae" RELATED [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "lamina fusca sclerae" RELATED LATIN [FMA:TA] synonym: "lamina fusca scletae" RELATED [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "lamina suprachorioidea" EXACT LATIN [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "lamina suprachorioidea" RELATED LATIN [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "lamina suprachoroidea" EXACT LATIN [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "suprachoroid lamina of sclera" RELATED [FMA:58368] xref: FMA:58368 xref: http://www.snomedbrowser.com/Codes/Details/280607003 xref: Suprachoroid:lamina relationship: part_of UBERON:0013399 ! blood vessel layer of choroid property_value: UBPROP:0000010 "The spaces between the lamellae are lined by endothelium, and open freely into the perichoroidal lymph space, which, in its turn, communicates with the periscleral space by the perforations in the sclera through which the vessels and nerves are transmitted." xsd:string property_value: UBPROP:0000012 "FMA treats this as part of the sclera" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0010366 name: conjunctival vasculature namespace: uberon def: "A vasculature that is part of a conjunctiva." [OBOL:automatic] synonym: "conjunctival veins" EXACT [FMA:70887] synonym: "conjunctival veins set" EXACT [FMA:70887] synonym: "set of conjunctival veins" EXACT [FMA:70887] synonym: "venae conjunctivales" EXACT LATIN [FMA:TA] xref: FMA:70887 is_a: UBERON:0002203 ! vasculature of eye [Term] id: UBERON:0010367 name: conjunctival vein namespace: uberon def: "A vein that is part of a conjunctiva." [OBOL:automatic] synonym: "conjunctival blood vessel" BROAD [] xref: FMA:70887 xref: http://www.snomedbrowser.com/Codes/Details/149885003 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0010366 ! conjunctival vasculature [Term] id: UBERON:0010370 name: tibial vein namespace: uberon def: "One of the veins of the lower leg; empty into the popliteal vein" [http://www.thefreedictionary.com/tibial+vein] synonym: "vena tibialis" EXACT [] xref: EMAPA:37199 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C0447138 xref: MA:0002243 xref: NCIT:C33787 xref: UMLS:C0447138 {source="ncithesaurus:Tibial_Vein"} is_a: UBERON:0001638 {source="MA"} ! vein is_a: UBERON:0003503 ! leg blood vessel [Term] id: UBERON:0010396 name: afferent lymphatic vessel namespace: uberon def: "Lymphatic vessel that enters the lymph node. The afferent lymph vessels enter at all parts of the periphery of the lymph node, and after branching and forming a dense plexus in the substance of the capsule, open into the lymph sinuses of the cortical part. In doing this they lose all their coats except their endothelial lining, which is continuous with a layer of similar cells lining the lymph paths" [MP:MP] subset: pheno_slim synonym: "vasa afferentia lymphoglandula" EXACT [http://en.wikipedia.org/wiki/Afferent_lymphatic_vessels] synonym: "vasa afferentia lymphoglandulae" EXACT [http://en.wikipedia.org/wiki/Afferent_lymphatic_vessels] xref: http://en.wikipedia.org/wiki/File\:Illu_lymph_node_structure.png xref: MA:0000748 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0010397 name: efferent lymphatic vessel namespace: uberon def: "Lymphatic vessel that exits the lymph node. The efferent lymphatic vessel commences from the lymph sinuses of the medullary portion of the lymph nodes and leave the lymph nodes either to veins or greater nodes. Efferent lymphatic vessels are also found in the thymus and spleen. This is in contrast to afferent lymphatic vessels, which are found only in lymph nodes." [MP:MP] subset: pheno_slim synonym: "efferent lymphatic vessel" RELATED [http://en.wikipedia.org/wiki/Efferent_lymph_vessel] synonym: "efferent lymphatic vessels" RELATED [http://en.wikipedia.org/wiki/Efferent_lymph_vessel] xref: http://en.wikipedia.org/wiki/Efferent_lymph_vessel xref: MA:0000749 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0010399 name: spleen trabecular artery namespace: uberon def: "one of the branches of the splenic artery[MP]" [http://en.wikipedia.org/wiki/Trabecular_arteries, MP:0002354] subset: pheno_slim synonym: "trabecular artery" RELATED [] xref: http://linkedlifedata.com/resource/umls/id/C1710159 xref: MA:0000759 xref: NCIT:C49775 xref: Trabecular:arteries xref: UMLS:C1710159 {source="ncithesaurus:Splenic_Trabecular_Artery"} is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001194 {source="MP"} ! splenic artery relationship: part_of UBERON:0001194 ! splenic artery property_value: UBPROP:0000001 "When the splenic artery passes into the trabecula of the spleen and branches, they become known as the trabecular arteries. When these arteries then reach the white pulp, and become covered with Periarteriolar lymphoid sheaths, the name changes again to central arteries (or central arterioles). Branches of the central arteries are given to the red pulp, and these are called penicillar arteries).[Wikipedia]" xsd:string {ontology="Wikipedia", source="Trabecular:arteries"} [Term] id: UBERON:0010400 name: spleen trabecular vein namespace: uberon def: "one of the veins that feed the splenic vein" [http://en.wikipedia.org/wiki/Trabecular_veins, MP:0002228] subset: pheno_slim synonym: "trabecular vein" RELATED [http://en.wikipedia.org/wiki/Trabecular_veins] xref: http://linkedlifedata.com/resource/umls/id/C1710160 xref: MA:0000760 xref: NCIT:C49779 xref: Trabecular:veins xref: UMLS:C1710160 {source="ncithesaurus:Splenic_Trabecular_Vein"} is_a: UBERON:0013126 ! vein of abdomen property_value: UBPROP:0000001 "The trabecular veins are the largest veins inside the spleen. It drains the blood collected in the sinuses of the pulp.[Wikipedia]" xsd:string {ontology="Wikipedia", source="Trabecular:veins"} [Term] id: UBERON:0010401 name: spleen central arteriole namespace: uberon def: "A blood vessel surrounded by the periarteriolar lymphoid sheath that connects the trabecular artery to the trabecular vein" [MP:MP] subset: pheno_slim synonym: "central arteriole" BROAD [] synonym: "follicular arteriole" EXACT [MP:0002361] synonym: "splenic arteriole" BROAD [] synonym: "splenic central arteriole" EXACT [MP:0002361] xref: MA:0000763 is_a: UBERON:0022292 ! splenic arteriole relationship: branching_part_of UBERON:0010399 {source="Trabecular:arteries"} ! spleen trabecular artery relationship: connected_to UBERON:0010400 ! spleen trabecular vein relationship: part_of UBERON:0010399 ! spleen trabecular artery [Term] id: UBERON:0010408 name: ocular angle artery namespace: uberon def: "The angular artery is the terminal part of the facial artery; it ascends to the medial angle of the eye's orbit, imbedded in the fibers of the angular head of the Quadratus labii superioris, and accompanied by the angular vein." [MP:MP] synonym: "angular artery" EXACT [FMA:49583] xref: EMAPA:37673 {source="MA:th"} xref: FMA:49583 xref: http://linkedlifedata.com/resource/umls/id/C0226116 xref: http://www.snomedbrowser.com/Codes/Details/145238006 xref: MA:0002010 xref: NCIT:C32076 xref: UMLS:C0226116 {source="ncithesaurus:Angular_Artery"} is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001612 ! facial artery relationship: part_of UBERON:0001612 ! facial artery [Term] id: UBERON:0010523 name: microcirculatory vessel namespace: uberon def: "A vessel of the microcirculature, lying between the arterioles and venules; includes capillaries (blood and lymphatic), metarterioles and arteriovenous anastomoses." [http://orcid.org/0000-0002-6601-2165, MESH:A07.231.432, ZFA:0005251] synonym: "microcirculatory vessels" RELATED PLURAL [TAO:0005251] xref: MESH:A07.231.432 xref: TAO:0005251 xref: ZFA:0005251 relationship: part_of UBERON:0002049 {source="ZFA"} ! vasculature [Term] id: UBERON:0011005 name: endocardium of auricle namespace: uberon def: "An endocardium that is part of a atrium auricular region." [OBOL:automatic] synonym: "auricle endocardium" EXACT [FMA:13234] xref: FMA:13234 is_a: UBERON:0002166 ! endocardium of atrium intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0006618 ! atrium auricular region relationship: part_of UBERON:0006618 ! atrium auricular region property_value: UBPROP:0000012 "EHDAA2 this is an epithelium that is part of the endocardium" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0011006 name: endocardium of left auricle namespace: uberon def: "An endocardium that is part of a left atrium auricular region." [OBOL:automatic] synonym: "left atrium auricular region endocardium" EXACT [EHDAA2:0000277] synonym: "left auricle endocardial tissue" RELATED [VHOG:0001231] synonym: "left auricle endocardium" EXACT [FMA:13236] xref: EHDAA2:0000277 xref: FMA:13236 xref: VHOG:0001231 is_a: UBERON:0011005 ! endocardium of auricle is_a: UBERON:0034903 ! left atrium endocardium intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0006630 ! left atrium auricular region relationship: part_of UBERON:0006630 ! left atrium auricular region [Term] id: UBERON:0011007 name: endocardium of right auricle namespace: uberon def: "An endocardium that is part of a right atrium auricular region." [OBOL:automatic] synonym: "right auricle endocardium" EXACT [FMA:13235] xref: EHDAA2:0000292 xref: FMA:13235 is_a: UBERON:0009129 ! right atrium endocardium is_a: UBERON:0011005 ! endocardium of auricle intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0006631 ! right atrium auricular region relationship: part_of UBERON:0006631 ! right atrium auricular region [Term] id: UBERON:0011191 name: ophthalmic vein namespace: uberon def: "Ophthalmic veins are veins which drain the eye. More specifically, they can refer to: Superior ophthalmic vein Inferior ophthalmic vein" [http://en.wikipedia.org/wiki/Ophthalmic_veins] synonym: "opthalmic vein" EXACT [EHDAA2:0004113] synonym: "vena ophthalmica" RELATED [http://en.wikipedia.org/wiki/Ophthalmic_veins] xref: EHDAA2:0004113 xref: EMAPA:19313 xref: Ophthalmic:veins xref: XAO:0004169 is_a: UBERON:0009141 {source="EHDAA2-modified"} ! craniocervical region vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png [Term] id: UBERON:0011192 name: superior ophthalmic vein namespace: uberon def: "The superior ophthalmic vein begins at the inner angle of the orbit in a vein named the nasofrontal which communicates anteriorly with the angular vein; it pursues the same course as the ophthalmic artery, and receives tributaries corresponding to the branches of that vessel. Forming a short single trunk, it passes between the two heads of the Rectus lateralis and through the medial part of the superior orbital fissure, and ends in the cavernous sinus. The ethmoidal veins drain into the superior ophthalmic vein. Vorticose veins also drain into the superior ophthalmic vein." [http://en.wikipedia.org/wiki/Superior_ophthalmic_vein] synonym: "anterior ethmoidal vein" RELATED [http://en.wikipedia.org/wiki/Superior_ophthalmic_vein] synonym: "posterior ethmoidal vein" RELATED [http://en.wikipedia.org/wiki/Superior_ophthalmic_vein] synonym: "superior ophthalmic" RELATED [http://en.wikipedia.org/wiki/Superior_ophthalmic_vein] synonym: "superior opthalmic vein" RELATED [] xref: FMA:51246 xref: http://en.wikipedia.org/wiki/Superior_ophthalmic_vein xref: http://www.snomedbrowser.com/Codes/Details/149481004 is_a: UBERON:0011191 ! ophthalmic vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png [Term] id: UBERON:0011193 name: inferior ophthalmic vein namespace: uberon def: "The inferior ophthalmic vein begins in a venous net-work at the forepart of the floor and medial wall of the orbit; it receives some vorticose veins and other veins from the Rectus inferior, Obliquus inferior, lacrimal sac and eyelids, runs backward in the lower part of the orbit and divides into two branches. One of these passes through the inferior orbital fissure and joins the pterygoid venous plexus, while the other enters the cranium through the superior orbital fissure and ends in the cavernous sinus, either by a separate opening, or more frequently in common with the superior ophthalmic vein." [http://en.wikipedia.org/wiki/Inferior_ophthalmic_vein] synonym: "inferior ophthalmic" RELATED [http://en.wikipedia.org/wiki/Inferior_ophthalmic_vein] synonym: "inferior opthalmic vein" RELATED [] xref: FMA:51247 xref: http://en.wikipedia.org/wiki/Inferior_ophthalmic_vein xref: http://www.snomedbrowser.com/Codes/Details/149986001 is_a: UBERON:0011191 ! ophthalmic vein property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png [Term] id: UBERON:0011362 name: cranial blood vasculature namespace: uberon def: "A blood vasculature that is part of a head." [OBOL:automatic] synonym: "cranial blood vessel" EXACT [ZFA:0005297] synonym: "cranial blood vessels" RELATED PLURAL [TAO:0005297] synonym: "set of blood vessels of head" EXACT [] xref: TAO:0005297 xref: ZFA:0005297 is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0004537 ! blood vasculature property_value: UBPROP:0000001 "Blood vessel part of cranial vasculature.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005297", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0011363 name: cranial lymph vasculature namespace: uberon def: "A lymph vasculature that is part of a head." [OBOL:automatic] synonym: "cranial lymph vessel" EXACT [ZFA:0005298] synonym: "cranial lymph vessels" RELATED PLURAL [TAO:0005298] synonym: "cranial lymphatics" EXACT [UBERON:cjm] synonym: "set of cranial lymphatic vessels" RELATED [FMA:224562] synonym: "set of lymphatic vessels of head" EXACT [FMA:224562] xref: FMA:224562 xref: TAO:0005298 xref: ZFA:0005298 is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0004536 ! lymph vasculature [Term] id: UBERON:0011383 name: inferior pancreaticoduodenal vein namespace: uberon def: "A blood vessel running parallel to the inferior pancreatico-duodenal artery that drains blood from the pancreas and duodenum into the splenic vein." [ncithesaurus:Inferior_Pancreatico-Duodenal_Vein] synonym: "inferior pancreatico-duodenal vein" EXACT [MA:0002191] xref: EMAPA:37616 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C1711328 xref: MA:0002191 xref: NCIT:C52692 xref: UMLS:C1711328 {source="ncithesaurus:Inferior_Pancreatico-Duodenal_Vein"} is_a: UBERON:0004690 ! pancreaticoduodenal vein [Term] id: UBERON:0011384 name: superior pancreaticoduodenal vein namespace: uberon synonym: "superior pancreatico-duodenal vein" EXACT [MA:0002192] synonym: "vena pancreaticoduodenalis superior" EXACT [] xref: EMAPA:37194 {source="MA:th"} xref: MA:0002192 is_a: UBERON:0004690 ! pancreaticoduodenal vein [Term] id: UBERON:0011392 name: blood vessel internal elastic membrane namespace: uberon def: "A layer of elastic tissue that forms the outermost part of the tunica intima of blood vessels." [http://en.wikipedia.org/wiki/Internal_elastic_lamina] synonym: "inner elastic lamina" EXACT [FMA:68205] synonym: "internal elastic lamina" EXACT [FMA:68205] synonym: "internal elastic membrane" EXACT [MA:0002863] xref: EMAPA:36301 xref: FMA:68205 xref: http://en.wikipedia.org/wiki/Internal_elastic_lamina xref: http://linkedlifedata.com/resource/umls/id/C1512870 xref: http://www.snomedbrowser.com/Codes/Details/86405007 xref: MA:0002863 xref: NCIT:C32842 xref: UMLS:C1512870 {source="ncithesaurus:Internal_Elastic_Membrane"} is_a: UBERON:0003614 {source="MA"} ! blood vessel elastic tissue relationship: adjacent_to UBERON:0002522 ! tunica media property_value: UBPROP:0000001 "A stretchable connective tissue membrane that is the outermost component of the tunica intima, delineating the border between the tunica media and the tunica intima." xsd:string {source="ncithesaurus:Internal_Elastic_Membrane"} property_value: UBPROP:0000012 "in FMA this is classified as an acellular membrane, which is inconsistent with our classification as a tissue layer. Requires further investigation" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011693 name: extraembryonic portion of umbilical artery namespace: uberon synonym: "extraembryonic umbilical artery" EXACT [VHOG:0001157] xref: VHOG:0001157 is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001309 {source="FMA"} ! internal iliac artery relationship: part_of UBERON:0001309 ! internal iliac artery relationship: part_of UBERON:0001310 ! umbilical artery relationship: part_of UBERON:0007807 {source="EHDAA2-abduced"} ! connecting stalk vasculature [Term] id: UBERON:0011694 name: embryo portion of umbilical artery namespace: uberon def: "Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta." [VHOG:0000599] synonym: "embryonic umbilical artery" EXACT [VHOG:0000599] xref: VHOG:0000599 is_a: UBERON:0001637 ! artery property_value: UBPROP:0000001 "Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000599", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011695 name: embryonic cardiovascular system namespace: uberon def: "A cardiovascular system that is part of a conceptus." [OBOL:automatic] synonym: "conceptus cardiovascular system" EXACT [] synonym: "embryonic circulatory system" RELATED [] synonym: "fetal circulatory system" RELATED [] xref: EHDAA2:0000216 xref: FMA:305965 xref: NCIT:C34148 is_a: UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0011696 name: left extraembryonic umbilical artery namespace: uberon synonym: "extraembryonic umbilical artery left" EXACT [EHDAA2:0000937] xref: EHDAA2:0000937 is_a: UBERON:0011693 ! extraembryonic portion of umbilical artery relationship: connected_to UBERON:0011695 ! embryonic cardiovascular system [Term] id: UBERON:0011697 name: right extraembryonic umbilical artery namespace: uberon synonym: "extraembryonic umbilical artery right" EXACT [EHDAA2:0001721] xref: EHDAA2:0001721 is_a: UBERON:0011693 ! extraembryonic portion of umbilical artery [Term] id: UBERON:0011737 name: caudate lobe hepatic sinusoid namespace: uberon def: "A hepatic sinusoid that is part of a caudate lobe of liver." [OBOL:automatic] synonym: "liver right caudate lobe hepatic sinusoids" EXACT [EHDAA2:0001006] xref: EHDAA2:0001006 xref: EHDAA:6992 xref: EMAPA:18314 xref: VHOG:0000711 is_a: UBERON:0009548 ! hepatic sinusoid of left of lobe of liver is_a: UBERON:0009549 ! hepatic sinusoid of right of lobe of liver [Term] id: UBERON:0011738 name: quadrate lobe hepatic sinusoid namespace: uberon def: "A hepatic sinusoid that is part of a quadrate lobe of liver." [OBOL:automatic] synonym: "liver right quadrate lobe hepatic sinusoids" EXACT [EHDAA2:0001013] xref: EHDAA2:0001013 xref: EHDAA:8084 xref: EMAPA:18319 xref: VHOG:0000712 is_a: UBERON:0009549 ! hepatic sinusoid of right of lobe of liver [Term] id: UBERON:0011741 name: cardiac valve leaflet namespace: uberon synonym: "valve leaflet" RELATED [MA:0003179] xref: EMAPA:35903 xref: MA:0003179 relationship: part_of UBERON:0000946 ! cardial valve [Term] id: UBERON:0011742 name: aortic valve leaflet namespace: uberon def: "A cardiac valve leaflet that is part of a aortic valve." [OBOL:automatic] subset: pheno_slim synonym: "aortic valve leaflets" EXACT [VHOG:0000819] xref: EMAPA:18627 xref: VHOG:0000819 is_a: UBERON:0011741 ! cardiac valve leaflet intersection_of: UBERON:0011741 ! cardiac valve leaflet intersection_of: part_of UBERON:0002137 ! aortic valve relationship: part_of UBERON:0002137 ! aortic valve relationship: part_of UBERON:0010172 {source="MP"} ! bulb of aorta property_value: UBPROP:0000003 "Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000819", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)"} [Term] id: UBERON:0011745 name: pulmonary valve leaflets namespace: uberon def: "A cardiac valve leaflet that is part of a pulmonary valve." [OBOL:automatic] subset: pheno_slim xref: EMAPA:18629 xref: VHOG:0000820 is_a: UBERON:0011741 ! cardiac valve leaflet intersection_of: UBERON:0011741 ! cardiac valve leaflet intersection_of: part_of UBERON:0002146 ! pulmonary valve relationship: part_of UBERON:0002146 ! pulmonary valve property_value: UBPROP:0000003 "Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000820", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)"} [Term] id: UBERON:0011765 name: jugular lymph sac namespace: uberon def: "An embryonic lymph sac that forms at the junction of the future internal jugular/anterior cardinals and subclavian veins." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383, VHOG:0001000] xref: EMAPA:18249 xref: NCIT:C34196 xref: VHOG:0001000 is_a: UBERON:0034953 ! embryonic lymph sac property_value: UBPROP:0000001 "Lymphatic vessels develop from lymph sacs that arise from developing veins, which are derived from mesoderm. The first lymph sacs to appear are the paired jugular lymph sacs at the junction of the internal jugular and subclavian veins. [Wikipedia:Lymphatic_system][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001000", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011819 name: lumen of atrioventricular canal namespace: uberon def: "A tube lumen that is part of a atrioventricular canal." [OBOL:automatic] synonym: "AVC lumen" EXACT [] synonym: "cavity of atrioventricular canal" EXACT [] synonym: "lumen of AVC" EXACT [] xref: EHDAA2:0000152 relationship: luminal_space_of UBERON:0002087 ! atrioventricular canal relationship: part_of UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0011820 name: atrioventricular region namespace: uberon def: "An anatomical junction that divides and overlaps with and atrium and a ventricle in the heart." [http://orcid.org/0000-0002-6601-2165] synonym: "atrial ventricular junction" RELATED [GO:0003294] synonym: "atrioventricular junction" RELATED [FMA:85125, GO:0003294] synonym: "atrioventricular segment" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21234997] synonym: "AV region" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21234997] synonym: "AV segment" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21234997] xref: EHDAA2:0004149 xref: FMA:85125 relationship: connects UBERON:0002081 ! cardiac atrium relationship: connects UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0011861 name: aorta collagen fibril namespace: uberon def: "The connective tissue bundles in the extracellular matrix of aorta tissue that are composed of collagen, and play a role in tissue strength and elasticity" [MP:0011640] subset: pheno_slim relationship: contributes_to_morphology_of UBERON:0004664 ! aorta tunica adventitia relationship: part_of UBERON:0004664 ! aorta tunica adventitia [Term] id: UBERON:0011897 name: cardiac endomysium namespace: uberon def: "Reticular tissue which surrounds a cardiac myocyte." [FMA:83112] synonym: "endomysium of cardiac muscle cell" EXACT [FMA:83112] synonym: "fibrocollagenous sheath of cardiac muscle cell" EXACT [FMA:83112] xref: FMA:83112 relationship: part_of UBERON:0001133 ! cardiac muscle tissue relationship: surrounds CL:0000746 ! cardiac muscle cell [Term] id: UBERON:0011944 name: subintestinal vein namespace: uberon subset: dubious_grouping synonym: "SIV" EXACT [ZFA:0005035] synonym: "vitelline vein" RELATED INCONSISTENT [ZFA:0005035] xref: TAO:0005035 xref: XAO:0004172 xref: ZFA:0005035 is_a: UBERON:0001638 {source="XAO"} ! vein [Term] id: UBERON:0011955 name: left hepatic vein namespace: uberon def: "A hepatic vein that is part of a left lobe of liver." [OBOL:automatic] xref: EMAPA:37164 {source="MA:th"} xref: FMA:14339 xref: http://www.snomedbrowser.com/Codes/Details/55188000 xref: MA:0003032 is_a: UBERON:0001143 ! hepatic vein [Term] id: UBERON:0011956 name: right hepatic vein namespace: uberon def: "A hepatic vein that is part of a right lobe of liver." [OBOL:automatic] xref: EMAPA:37377 {source="MA:th"} xref: FMA:14338 xref: http://www.snomedbrowser.com/Codes/Details/18135006 xref: MA:0003034 is_a: UBERON:0001143 ! hepatic vein [Term] id: UBERON:0011957 name: middle hepatic vein namespace: uberon xref: EMAPA:37175 {source="MA:th"} xref: FMA:14340 xref: http://www.snomedbrowser.com/Codes/Details/54895000 xref: MA:0003033 is_a: UBERON:0001143 ! hepatic vein [Term] id: UBERON:0012173 name: middle suprarenal artery namespace: uberon def: "The middle suprarenal arteries (middle capsular arteries; suprarenal arteries) are two small vessels which arise, one from either side of the abdominal aorta, opposite the superior mesenteric artery. They pass laterally and slightly upward, over the crura of the diaphragm, to the suprarenal glands, where they anastomose with suprarenal branches of the inferior phrenic and renal arteries. In the fetus these arteries are of large size." [http://en.wikipedia.org/wiki/Middle_suprarenal_arteries] synonym: "arteria suprarenalis media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_suprarenal_arteries] synonym: "middle capsular artery" RELATED [http://en.wikipedia.org/wiki/Middle_suprarenal_arteries] synonym: "middle suprarenal" RELATED [http://en.wikipedia.org/wiki/Middle_suprarenal_arteries] synonym: "middle suprarenal arterial tree" EXACT [FMA:14754] synonym: "middle suprarenal artery" RELATED [http://en.wikipedia.org/wiki/Middle_suprarenal_arteries] xref: FMA:14754 xref: http://en.wikipedia.org/wiki/Middle_suprarenal_arteries xref: http://www.snomedbrowser.com/Codes/Details/303425000 is_a: UBERON:0005624 ! suprarenal artery is_a: UBERON:0012254 ! abdominal aorta artery [Term] id: UBERON:0012187 name: frontal artery namespace: uberon def: "The supratrochlear artery (or frontal artery), one of the terminal branches of the ophthalmic artery, branches off where the ophthalmic travels posterior to the trochlea." [http://en.wikipedia.org/wiki/Supratrochlear_artery] synonym: "a supratrochlearis" RELATED [http://en.wikipedia.org/wiki/Supratrochlear_artery] synonym: "frontal arteries" RELATED [http://en.wikipedia.org/wiki/Supratrochlear_artery] synonym: "frontal artery" RELATED [http://en.wikipedia.org/wiki/Supratrochlear_artery] synonym: "supratrochlear artery" EXACT [FMA:50025] synonym: "supratrochlear branch of ophthalmic artery" EXACT [FMA:50025] xref: EMAPA:37590 {source="MA:th"} xref: FMA:50025 xref: http://linkedlifedata.com/resource/umls/id/C1708100 xref: http://www.snomedbrowser.com/Codes/Details/369332005 xref: MA:0001960 xref: NCIT:C52856 xref: Supratrochlear:artery xref: UMLS:C1708100 {source="ncithesaurus:Frontal_Artery"} is_a: UBERON:0015156 {source="FMA"} ! terminal branch of ophthalmic artery [Term] id: UBERON:0012193 name: phrenic vein namespace: uberon def: "The veins that run parallel to the phrenic arteries which include the two superior and two inferior phrenic veins." [ncithesaurus:Phrenic_Vein] xref: EMAPA:37180 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C1709532 xref: MA:0002194 xref: NCIT:C53062 xref: UMLS:C1709532 {source="ncithesaurus:Phrenic_Vein"} is_a: UBERON:0001638 ! vein [Term] id: UBERON:0012194 name: superior intercostal vein namespace: uberon def: "The superior intercostal veins are two veins that drain the 2nd, 3rd, and 4th intercostal spaces, one vein for each side of the body." [http://en.wikipedia.org/wiki/Superior_intercostal_vein] xref: EMAPA:37193 {source="MA:th"} xref: http://en.wikipedia.org/wiki/Superior_intercostal_vein xref: http://linkedlifedata.com/resource/umls/id/C1515066 xref: MA:0002226 xref: NCIT:C33680 xref: UMLS:C1515066 {source="ncithesaurus:Superior_Intercostal_Vein"} is_a: UBERON:0012197 ! intercostal vein [Term] id: UBERON:0012195 name: left superior intercostal vein namespace: uberon xref: FMA:4797 xref: http://www.snomedbrowser.com/Codes/Details/27297006 is_a: UBERON:0012194 ! superior intercostal vein [Term] id: UBERON:0012196 name: right superior intercostal vein namespace: uberon xref: FMA:4877 xref: http://www.snomedbrowser.com/Codes/Details/80721005 is_a: UBERON:0012194 ! superior intercostal vein [Term] id: UBERON:0012197 name: intercostal vein namespace: uberon def: "The intercostal veins are a group of veins which drain the area between the ribs." [http://en.wikipedia.org/wiki/Intercostal_veins] xref: EMAPA:18762 xref: http://www.snomedbrowser.com/Codes/Details/281057004 xref: Intercostal:veins xref: MA:0003166 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0012199 name: posterior intercostal vein namespace: uberon def: "The posterior intercostal veins are veins that drain the intercostal spaces posteriorly. They run with their corresponding posterior intercostal artery on the underside of the rib, the vein superior to the artery. Each vein also gives off a dorsal branch that drains blood from the muscles of the back. There are eleven posterior intercostal veins on each side. Their patterns are variable, but they are commonly arranged as: The 1st posterior intercostal vein, supreme intercostal vein, drains into the brachiocephalic vein or the vertebral vein. The 2nd and 3rd (and often 4th) posterior intercostal veins drain into the superior intercostal vein. The remaining posterior intercostal veins drain into the azygos vein on the right, or the hemiazygos vein on the left." [http://en.wikipedia.org/wiki/Posterior_intercostal_veins] synonym: "venae intercostalis posterior" EXACT LATIN [FMA:4858] xref: FMA:4858 xref: http://en.wikipedia.org/wiki/Posterior_intercostal_veins xref: http://www.snomedbrowser.com/Codes/Details/89209000 is_a: UBERON:0012197 ! intercostal vein disjoint_from: UBERON:0012200 {source="lexical"} ! anterior intercostal vein [Term] id: UBERON:0012200 name: anterior intercostal vein namespace: uberon def: "The anterior intercostal veins are the veins which drain the anterior intercostal space." [http://en.wikipedia.org/wiki/Anterior_intercostal_veins] xref: FMA:12831 xref: http://en.wikipedia.org/wiki/Anterior_intercostal_veins xref: http://www.snomedbrowser.com/Codes/Details/15546000 is_a: UBERON:0012197 ! intercostal vein [Term] id: UBERON:0012237 name: superior phrenic vein namespace: uberon def: "The superior phrenic vein, i.e. , the vein accompanying the pericardiacophrenic artery, usually opens into the internal mammary vein." [http://en.wikipedia.org/wiki/Superior_phrenic_vein] xref: FMA:78121 xref: http://en.wikipedia.org/wiki/Superior_phrenic_vein xref: http://www.snomedbrowser.com/Codes/Details/198356008 is_a: UBERON:0012193 {source="cjm"} ! phrenic vein [Term] id: UBERON:0012239 name: urinary bladder vasculature namespace: uberon def: "network of tubes that carries blood through the distensible musculomembranous organ that serves to collect and store urine excreted by the kidneys[MP]" [MP:MP] subset: pheno_slim synonym: "bladder vasculature" EXACT [] synonym: "blood vessel of bladder" RELATED [EMAPA:28679] synonym: "blood vessels of bladder" EXACT [EMAPA:28679] synonym: "set of urinary bladder blood vessels" EXACT [] xref: EMAPA:28679 is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0012254 name: abdominal aorta artery namespace: uberon def: "An artery that originates from the abdominal aorta" [http://en.wikipedia.org/wiki/Abdominal_aorta#Branches, https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "abdominal artery" EXACT [] synonym: "artery of abdomen" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/281470000 is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001516 ! abdominal aorta relationship: branching_part_of UBERON:0001516 ! abdominal aorta relationship: part_of UBERON:0001516 ! abdominal aorta [Term] id: UBERON:0012255 name: inferior phrenic artery namespace: uberon def: "The inferior phrenic arteries are two small vessels, which supply the diaphragm but present much variety in their origin. They may arise separately from the front of the aorta, immediately above the celiac artery, or by a common trunk, which may spring either from the aorta or from the celiac artery. Sometimes one is derived from the aorta, and the other from one of the renal arteries; they rarely arise as separate vessels from the aorta. They diverge from one another across the crura of the diaphragm, and then run obliquely upward and lateralward upon its under surface. The left phrenic passes behind the esophagus, and runs forward on the left side of the esophageal hiatus. The right phrenic passes behind the inferior vena cava, and along the right side of the foramen which transmits that vein. Near the back part of the central tendon each vessel divides into a medial and a lateral branch. The medial branch curves forward, and anastomoses with its fellow of the opposite side, and with the musculophrenic and pericardiacophrenic arteries. The lateral branch passes toward the side of the thorax, and anastomoses with the lower intercostal arteries, and with the musculophrenic. The lateral branch of the right phrenic gives off a few vessels to the inferior vena cava; and the left one, some branches to the esophagus. Each vessel gives off superior suprarenal branches to the suprarenal gland of its own side. The spleen and the liver also receive a few twigs from the left and right vessels respectively." [http://en.wikipedia.org/wiki/Inferior_phrenic_arteries] synonym: "arteriae phrenicae inferiores" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_phrenic_artery] synonym: "inferior phrenic artery" RELATED [http://en.wikipedia.org/wiki/Inferior_phrenic_arteries] xref: FMA:14734 xref: http://en.wikipedia.org/wiki/Inferior_phrenic_arteries xref: http://www.snomedbrowser.com/Codes/Details/244283000 is_a: UBERON:0002057 ! phrenic artery is_a: UBERON:0012254 ! abdominal aorta artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png [Term] id: UBERON:0012308 name: superficial lateral cervical lymph node namespace: uberon def: "The superficial lateral cervical lymph nodes are found in proximity to the external jugular vein." [http://en.wikipedia.org/wiki/Superficial_lateral_cervical_lymph_nodes] synonym: "superficial lateral cervical node" EXACT [FMA:12769] xref: FMA:12769 xref: http://en.wikipedia.org/wiki/Superficial_lateral_cervical_lymph_nodes xref: http://www.snomedbrowser.com/Codes/Details/50679006 is_a: UBERON:0004870 ! superficial cervical lymph node [Term] id: UBERON:0012309 name: superficial anterior cervical lymph node namespace: uberon def: "The superficial anterior cervical lymph nodes are found in proximity to the anterior jugular vein." [http://en.wikipedia.org/wiki/Superficial_anterior_cervical_lymph_nodes] synonym: "anterior jugular lymph node" EXACT [FMA:12776] xref: FMA:12776 xref: http://en.wikipedia.org/wiki/Superficial_anterior_cervical_lymph_nodes xref: http://www.snomedbrowser.com/Codes/Details/22993006 is_a: UBERON:0004870 ! superficial cervical lymph node [Term] id: UBERON:0012310 name: deep lateral cervical lymph node namespace: uberon def: "The deep lateral cervical lymph nodes are found near the upper part of the internal jugular vein in the neck, lateral or posterior to the carotid sheath." [http://en.wikipedia.org/wiki/Deep_lateral_cervical_lymph_nodes] synonym: "deep lateral cervical node" EXACT [FMA:12770] xref: FMA:12770 xref: http://en.wikipedia.org/wiki/Deep_lateral_cervical_lymph_nodes xref: http://www.snomedbrowser.com/Codes/Details/61755005 is_a: UBERON:0004722 ! deep cervical lymph node [Term] id: UBERON:0012311 name: deep anterior cervical lymph node namespace: uberon def: "The deep anterior cervical lymph nodes are found near the middle cricothyroid ligament and the trachea." [http://en.wikipedia.org/wiki/Deep_anterior_cervical_lymph_nodes] xref: FMA:12779 xref: http://en.wikipedia.org/wiki/Deep_anterior_cervical_lymph_nodes xref: http://www.snomedbrowser.com/Codes/Details/52363008 is_a: UBERON:0004722 ! deep cervical lymph node [Term] id: UBERON:0012318 name: anterior ethmoidal artery namespace: uberon def: "The anterior ethmoidal artery, also anterior ethmoid artery is an artery of the head. Once branching from the ophthalmic artery, it accompanies the nasociliary nerve through the anterior ethmoidal canal to supply the anterior and middle ethmoidal cells, frontal sinus, and anterosuperior aspect of the lateral nasal wall[WP]" [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "a. ethmoidalis anterior" EXACT LATIN [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "anterior ethmoid artery" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "anterior meningeal arteries" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "anterior meningeal artery" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] synonym: "arteria ethmoidalis anterior" EXACT LATIN [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] xref: FMA:49986 xref: http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery xref: http://www.snomedbrowser.com/Codes/Details/312160004 is_a: UBERON:0005193 ! ethmoidal artery disjoint_from: UBERON:0012319 {source="lexical"} ! posterior ethmoidal artery [Term] id: UBERON:0012319 name: posterior ethmoidal artery namespace: uberon def: "The posterior ethmoidal artery is an artery of the head. It is smaller than the anterior ethmoidal artery, branches off from the ophthalmic artery when it reaches the medial wall of the orbit." [http://en.wikipedia.org/wiki/Posterior_ethmoidal_artery] synonym: "a. ethmoidalis posterior" EXACT LATIN [http://en.wikipedia.org/wiki/Posterior_ethmoidal_artery] synonym: "arteria ethmoidalis posterior" EXACT LATIN [http://en.wikipedia.org/wiki/Posterior_ethmoidal_artery] synonym: "posterior ethmoidal vessel" RELATED [http://en.wikipedia.org/wiki/Posterior_ethmoidal_artery] xref: FMA:49989 xref: http://en.wikipedia.org/wiki/Posterior_ethmoidal_artery xref: http://www.snomedbrowser.com/Codes/Details/312161000 is_a: UBERON:0005193 ! ethmoidal artery [Term] id: UBERON:0012320 name: cervical artery namespace: uberon def: "An artery of the neck" [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37075 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C1707349 xref: NCIT:C52850 xref: UMLS:C1707349 {source="ncithesaurus:Cervical_Artery"} is_a: UBERON:0001637 ! artery is_a: UBERON:0003502 ! neck blood vessel [Term] id: UBERON:0012321 name: deep cervical artery namespace: uberon def: "The deep cervical artery (Profunda cervicalis) is an artery of the neck." [http://en.wikipedia.org/wiki/Deep_cervical_artery] synonym: "profunda cervicalis" RELATED [http://en.wikipedia.org/wiki/Deep_cervical_artery] xref: FMA:10659 xref: http://en.wikipedia.org/wiki/Deep_cervical_artery xref: http://www.snomedbrowser.com/Codes/Details/244223002 is_a: UBERON:0012320 ! cervical artery intersection_of: UBERON:0012320 ! cervical artery intersection_of: part_of UBERON:0035551 ! deep vasculature relationship: branching_part_of UBERON:0004688 {source="FMA"} ! costo-cervical trunk relationship: part_of UBERON:0004688 ! costo-cervical trunk relationship: part_of UBERON:0035551 ! deep vasculature [Term] id: UBERON:0012322 name: ascending cervical artery namespace: uberon def: "The ascending cervical artery is a small branch which arises from the inferior thyroid artery as that vessel is passing behind the carotid sheath; it runs up on the anterior tubercles of the transverse processes of the cervical vertebrC& in the interval between the Scalenus anterior and Longus capitis. To the muscles of the neck it gives twigs which anastomose with branches of the vertebral, and it sends one or two spinal branches into the vertebral canal through the intervertebral foramina to be distributed to the medulla spinalis and its membranes, and to the bodies of the vertebrC&, in the same manner as the spinal branches from the vertebral. It anastomoses with the ascending pharyngeal and occipital arteries." [http://en.wikipedia.org/wiki/Ascending_cervical_artery] synonym: "ascending cervical" RELATED [http://en.wikipedia.org/wiki/Ascending_cervical_artery] xref: FMA:52489 xref: http://en.wikipedia.org/wiki/Ascending_cervical_artery xref: http://www.snomedbrowser.com/Codes/Details/161846001 is_a: UBERON:0012320 ! cervical artery relationship: branching_part_of UBERON:0007149 {source="FMA", source="Wikipedia"} ! inferior thyroid artery relationship: part_of UBERON:0007149 ! inferior thyroid artery [Term] id: UBERON:0012324 name: transverse cervical artery namespace: uberon def: "The transverse cervical artery (transverse artery of neck, transversa colli artery) is a branch of the thyrocervical trunk, running at a higher level than the suprascapular artery." [http://en.wikipedia.org/wiki/Transverse_cervical_artery] synonym: "cervical artery" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] synonym: "cervical artery" RELATED [MA:0001936] synonym: "cervical transverse artery" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] synonym: "descending branch of the transverse cervical" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] synonym: "transversalis artery colli" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] synonym: "transversalis colli artery" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] synonym: "transverse cervical" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] synonym: "transverse cervical vessels" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] xref: FMA:10664 xref: http://en.wikipedia.org/wiki/Transverse_cervical_artery xref: http://www.snomedbrowser.com/Codes/Details/244224008 xref: MA:0001936 is_a: UBERON:0012320 ! cervical artery property_value: UBPROP:0000012 "Unclear if MA class belongs here or in parent" xsd:string {external_ontology="MA"} [Term] id: UBERON:0012416 name: respiratory system arterial smooth muscle namespace: uberon xref: EMAPA:37567 {source="MA:th"} xref: MA:0001802 is_a: UBERON:0004297 ! respiratory system blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle relationship: part_of UBERON:0003643 ! respiratory system arterial blood vessel [Term] id: UBERON:0012418 name: respiratory system venous smooth muscle namespace: uberon def: "A smooth muscle tissue that is part of a respiratory system venous blood vessel." [OBOL:automatic] xref: EMAPA:37586 {source="MA:th"} xref: MA:0001812 is_a: UBERON:0004696 ! venous system smooth muscle relationship: part_of UBERON:0003476 ! respiratory system venous blood vessel [Term] id: UBERON:0012441 name: endothelium of peritubular capillary namespace: uberon def: "A endothelium that is part of a peritubular capillary." [OBOL:automatic] synonym: "peritubular capillary endothelium" EXACT [] synonym: "peritubular endothelium" BROAD [] is_a: UBERON:0001915 ! endothelium of capillary relationship: part_of UBERON:0005272 ! peritubular capillary [Term] id: UBERON:0013124 name: left posterior cardinal vein namespace: uberon def: "A posterior cardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] synonym: "left postcardinal vein" EXACT [FMA:70316] synonym: "posterior cardinal vein left" EXACT [EHDAA2:0001486] xref: EHDAA2:0001486 xref: FMA:70316 xref: http://www.snomedbrowser.com/Codes/Details/361504002 is_a: UBERON:0002065 ! posterior cardinal vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0013125 name: left subcardinal vein namespace: uberon def: "A subcardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] synonym: "subcardinal vein left" EXACT [EHDAA2:0001932] xref: EHDAA2:0001932 xref: http://www.snomedbrowser.com/Codes/Details/361451002 is_a: UBERON:0006296 ! subcardinal vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0013126 name: vein of abdomen namespace: uberon def: "A vein that is part of a abdomen." [OBOL:automatic] subset: grouping_class synonym: "abdominal vein" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/281473003 is_a: UBERON:0001638 ! vein is_a: UBERON:0003497 ! abdomen blood vessel property_value: IAO:0000116 "TODO mirror representation of abdominal aorta" xsd:string property_value: IAO:0000232 "this class groups all veins that are in the abdomen. The term 'abdominal vein' may have specific meanings in different contexts. The lateral abdominal veins are present in fishes but usually merged or absent in tetrapods; in amphibians, the L&R abdominal veins merge into the ventral abdominal vein" xsd:string [Term] id: UBERON:0013127 name: pulmonary venous system namespace: uberon def: "The part of the venous system that drains the lungs[Kardong]" [http://en.wikipedia.org/wiki/Pulmonary_venous_system, ISBN:0073040584] synonym: "pulmonary venous circulatory system" EXACT [] xref: http://en.wikipedia.org/wiki/Pulmonary_venous_system is_a: UBERON:0002049 ! vasculature relationship: channels_from UBERON:0000102 ! lung vasculature relationship: part_of UBERON:0004582 ! venous system property_value: UBPROP:0000001 "Pulmonary circulation is the half portion of the cardiovascular system which carries oxygen-depleted blood away from the heart, to the lungs, and returns oxygenated (oxygen-rich) blood back to the heart. The term pulmonary circulation is readily paired and contrasted with the systemic circulation. A separate system known as the bronchial circulation supplies blood to the tissue of the larger airways of the lung." xsd:string {source="Pulmonary:circulation"} [Term] id: UBERON:0013132 name: penicillar arteriole namespace: uberon def: "One of the small straight arteries of the red pulp of the spleen; a branch of the spleen central artery that supplies the red pulp[WP,modified]" [http://www.merriam-webster.com/medical/penicillus, https://orcid.org/0000-0002-6601-2165] synonym: "penicillar artery" RELATED [] synonym: "penicilli" EXACT PLURAL [http://www.merriam-webster.com/medical/penicilli] synonym: "penicillus" EXACT [FMA:16038] xref: FMA:16038 is_a: UBERON:0010399 ! spleen trabecular artery is_a: UBERON:0022292 ! splenic arteriole relationship: branching_part_of UBERON:0010401 {source="Trabecular:arteries"} ! spleen central arteriole relationship: part_of UBERON:0010401 ! spleen central arteriole [Term] id: UBERON:0013133 name: superior phrenic artery namespace: uberon def: "A phrenic artery that arises from the lower part of the thoracic aorta and is distributed to the posterior part of the upper surface of the diaphragm, and anastomoses with the musculophrenic and pericardiacophrenic arteries." [http://en.wikipedia.org/wiki/Superior_phrenic_artery, http://orcid.org/0000-0002-6601-2165] synonym: "arteria phrenicea superioris" EXACT LATIN [FMA:4163, FMA:TA] synonym: "arteriae phrenicae superiores" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_phrenic_artery] synonym: "superior phrenic branches" RELATED [http://en.wikipedia.org/wiki/Superior_phrenic_artery] xref: FMA:4163 xref: http://en.wikipedia.org/wiki/Superior_phrenic_artery xref: http://www.snomedbrowser.com/Codes/Details/198521008 is_a: UBERON:0002057 ! phrenic artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: branching_part_of UBERON:0001515 {source="Wikipedia"} ! thoracic aorta relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0013136 name: vein of lip namespace: uberon def: "A vein that drains a lip." [OBOL:automatic] synonym: "labial vein" RELATED [] synonym: "labial vein of face" EXACT [] synonym: "lip vein" EXACT [OBOL:automatic] synonym: "vena labialis" EXACT LATIN [] xref: http://www.snomedbrowser.com/Codes/Details/367664002 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001653 ! facial vein relationship: tributary_of UBERON:0001653 {source="FMA"} ! facial vein [Term] id: UBERON:0013137 name: external pudendal artery namespace: uberon def: "Either the superficial or deep external pudendal arteries" [http://en.wikipedia.org/wiki/External_pudendal_artery] xref: http://en.wikipedia.org/wiki/External_pudendal_artery xref: http://www.snomedbrowser.com/Codes/Details/244308005 is_a: UBERON:0007312 ! pudendal artery [Term] id: UBERON:0013140 name: systemic vein namespace: uberon def: "Any vein within the general circulation that transports blood back to the right atrium of the heart." [ncithesaurus:Systemic_Vein] synonym: "systemic venous tree organ part" EXACT [FMA:66644] xref: FMA:66644 xref: http://linkedlifedata.com/resource/umls/id/C0447117 xref: http://www.snomedbrowser.com/Codes/Details/244389004 xref: NCIT:C33719 xref: UMLS:C0447117 {source="ncithesaurus:Systemic_Vein"} is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0004581 ! systemic venous system relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0013141 name: capillary bed namespace: uberon def: "A localized group of blood capillaries." [AEO:0001002] synonym: "microcirculatory bed" RELATED [] xref: AEO:0001002 xref: EMAPA:36291 xref: FMA:45632 xref: http://linkedlifedata.com/resource/umls/id/C1513268 xref: NCIT:C33109 relationship: composed_primarily_of UBERON:0001982 ! capillary relationship: part_of UBERON:0002049 {source="FMA"} ! vasculature [Term] id: UBERON:0013142 name: soleal vein namespace: uberon def: "A vein that drains the soleus" [OBOL:automatic] synonym: "soleus vein" EXACT [] synonym: "vein of soleus muscle" EXACT [] synonym: "vena solealis" EXACT LATIN [] xref: http://www.snomedbrowser.com/Codes/Details/397427005 is_a: UBERON:0001551 {source="cjm"} ! vein of hindlimb zeugopod [Term] id: UBERON:0013143 name: gastrocnemius vein namespace: uberon def: "A vein that drains the gastrocnemius" [OBOL:automatic] comment: divided in medial gastrocnemius vein (vena medialis gastrocnemii), lateral gastrocnemius vein (vena lateralis gastrocnemii), and intergemellar vein (Vena intergemellaris), the vein ascending between the two heads of the gastrocnemius[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] synonym: "vein of gastrocnemius muscle" EXACT [] synonym: "vena gastrocnemii" EXACT LATIN [] xref: http://www.snomedbrowser.com/Codes/Details/264481007 is_a: UBERON:0001551 {source="cjm"} ! vein of hindlimb zeugopod [Term] id: UBERON:0013144 name: vein of genicular venous plexus namespace: uberon comment: The term genicular venous plexus (plexus venosus genicularis) should replace the term genicular veins. At the knee, deep veins do not correspond exactly to the branches of the popliteal artery (articular arteries). They are arranged in a complex plexus of interconnecting veins.[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] synonym: "genicular vein" RELATED [FMA:44559] xref: FMA:44559 is_a: UBERON:0001638 ! vein is_a: UBERON:0003503 ! leg blood vessel relationship: part_of UBERON:0001544 ! popliteal vein relationship: tributary_of UBERON:0001544 {source="FMA"} ! popliteal vein [Term] id: UBERON:0013145 name: accessory saphenous vein namespace: uberon synonym: "posteromedial vein of thigh" EXACT [FMA:44320] xref: FMA:44320 xref: http://www.snomedbrowser.com/Codes/Details/302677006 is_a: UBERON:0007318 ! saphenous vein relationship: part_of UBERON:0001363 ! great saphenous vein relationship: tributary_of UBERON:0001363 {source="FMA"} ! great saphenous vein [Term] id: UBERON:0013146 name: venous system of brain namespace: uberon def: "." [http://www.ncbi.nlm.nih.gov/pubmed/20557782, http://www.ncbi.nlm.nih.gov/pubmed/20566102] synonym: "brain venous system" EXACT [VHOG:0001328] synonym: "cranial venous system" RELATED [] xref: EHDAA2:0000185 xref: EMAPA:18631 xref: MA:0003184 xref: VHOG:0001328 is_a: UBERON:0007798 {source="cjm"} ! vascular system relationship: part_of UBERON:0004582 {source="VHOG-modified"} ! venous system [Term] id: UBERON:0013151 name: choroidal artery namespace: uberon def: "One of two arteries (anterior and posterior choroidal artery) that supply blood to the choroid plexus, optic tract, hippocampus, globus pallidus, and other various brain regions." [ncithesaurus:Choroidal_Artery] synonym: "artery of choroid plexus" EXACT [] synonym: "choroid artery" EXACT [] xref: http://linkedlifedata.com/resource/umls/id/C0226164 xref: http://www.snomedbrowser.com/Codes/Details/244210009 xref: NCIT:C32310 xref: UMLS:C0226164 {source="ncithesaurus:Choroidal_Artery"} is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001886 ! choroid plexus relationship: supplies UBERON:0001886 ! choroid plexus [Term] id: UBERON:0013152 name: interventricular foramen of heart namespace: uberon def: "A temporary opening between the developing ventricles of the heart. The ventricles arise as a single cavity is divided by the developing interventricular septum. Before the septum closes completely, the remaining opening between the two ventricles is termed the interventricular foramen." [http://en.wikipedia.org/wiki/Primary_interventricular_foramen] comment: Phenotype notes: In some individuals, the foramen fails to close, leading to an interventricular septal defect known as a patent interventricular foramen synonym: "interventricular foramen" RELATED [] synonym: "primary interventricular foramen" RELATED [EHDAA2:0004064] xref: EHDAA2:0004064 xref: http://en.wikipedia.org/wiki/Primary_interventricular_foramen relationship: located_in UBERON:0002094 {source="EHDAA2"} ! interventricular septum relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0013218 name: rete mirabile namespace: uberon def: "A rete mirabile (Latin for 'wonderful net'; plural retia mirabilia) is a complex of arteries and veins lying very close to each other, found in some vertebrates. The rete mirabile utilizes countercurrent blood flow within the net (blood flowing in opposite directions. ) It exchanges heat, ions, or gases between vessel walls so that the two bloodstreams within the rete maintain a gradient with respect to temperature, or concentration of gases or solutes." [http://en.wikipedia.org/wiki/Rete_mirabile] comment: GAT in FMA synonym: "red body" RELATED [http://en.wikipedia.org/wiki/Rete_mirabile] synonym: "red gland" RELATED [http://en.wikipedia.org/wiki/Rete_mirabile] synonym: "rete mirabilia" RELATED [http://en.wikipedia.org/wiki/Rete_mirabile] synonym: "rete mirabilis" RELATED [http://en.wikipedia.org/wiki/Rete_mirabile] synonym: "retie mirabilia" RELATED PLURAL [http://en.wikipedia.org/wiki/Rete_mirabile] synonym: "wonderful net" RELATED [http://en.wikipedia.org/wiki/Rete_mirabile] xref: FMA:76728 xref: Rete:mirabile is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0013220 name: foramen of Panizza namespace: uberon def: "A hole with that connects the left and right aorta in animals of the order Crocodilia." [http://en.wikipedia.org/wiki/Foramen_of_Panizza] xref: http://en.wikipedia.org/wiki/Foramen_of_Panizza relationship: connects UBERON:0000947 {minCardinality="2", maxCardinality="2"} ! aorta relationship: connects UBERON:0000947 ! aorta relationship: part_of UBERON:0000948 ! heart property_value: UBPROP:0000008 "Crocodilians have a completely separated ventricle with deoxygenated blood from the body, or systemic circulation, in the right ventricle and oxygenated blood from the lungs, or pulmonary circulation, in the left ventricle, as in birds and mammals. Two vessels, the left aorta and the pulmonary artery, exit the right ventricle. Blood from the right ventricle goes to the lungs through the pulmonary artery, as in mammals and birds. However, when a unique active valve leading to the pulmonary artery contracts, pressure in the right ventricle can increase and blood can leave the right ventricle, enter the left aortic arch, and therefore bypass the pulmonary circulation. The foramen of panizza connects the left and right aorta. Deoxygenated blood from the right ventricle, sitting in the left aorta, can flow into the right aorta through the foramen of panizza. When the heart is relaxed, some oxygenated blood from the left ventricle, sitting in the right aorta, can flow into the left aorta across the foramen of panizza. However, some species of Crocodilians have regulatory sphincters that prevent unwanted flow of blood through the foramen of panizza during non-diving" xsd:string [Term] id: UBERON:0013397 name: stratum argenteum of choroid namespace: uberon def: "A silver reflective layer in the outer choroid, adjacent to the sclera, frequently present in fish larvae but not as frequent in adults." [http://www.ncbi.nlm.nih.gov/pubmed/14738502] synonym: "choroid stratum argenteum" EXACT [] synonym: "stratum argenteum" BROAD [http://www.ncbi.nlm.nih.gov/pubmed/14738502] relationship: part_of UBERON:0001776 ! optic choroid property_value: RO:0002175 NCBITaxon:8065 property_value: UBPROP:0000008 "In species known to have a stratum argenteum as adults, like the toadfish (Toad- fishes), the tapetum lucidum is absent or vestigial and there is little choroidal melanin[PMID:14738502]" xsd:string [Term] id: UBERON:0013398 name: choroidal gland namespace: uberon def: "A gland that is part of a optic choroid." [OBOL:automatic] comment: Requires review is_a: UBERON:0001593 {source="FEED:rd"} ! venous plexus is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0011362 ! cranial blood vasculature relationship: part_of UBERON:0001776 ! optic choroid property_value: UBPROP:0000001 "a gland on the dorsal half of the fish eyeball[http://en.academic.ru/dic.nsf/en_ichthyology/2916/choroid]l" xsd:string {source="http://en.academic.ru/dic.nsf/en_ichthyology/2916/choroid"} property_value: UBPROP:0000001 "Teleosts bear a body of capillary adjacent to the optic nerve called the choroidal gland. Though its function is not known, it is believed to be a supplemental oxygen carrier[Wikipedia:Choroid#In_bony_fish]." xsd:string {source="In_bony_fish"} [Term] id: UBERON:0013399 name: blood vessel layer of choroid namespace: uberon synonym: "Haller's layer" NARROW [FMA:58435] synonym: "lamina choroideae vasculosa" EXACT LATIN [FMA:58435, FMA:TA] synonym: "lamina vasculosa (choroid)" EXACT [FMA:58435] synonym: "lamina vasculosa of choroid" EXACT [FMA:58435] synonym: "outer layer of choroid proper" EXACT [FMA:58435] synonym: "Sattler's layer" NARROW [FMA:58435] synonym: "vessel layer of choroid" EXACT [FMA:58435] xref: FMA:58435 relationship: composed_primarily_of UBERON:0001981 ! blood vessel relationship: part_of UBERON:0001776 {source="FMA"} ! optic choroid property_value: UBPROP:0000001 "a layer of medium-diameter blood vessels of the choroid, a layer of the eye[Wikipedia:Sattler's_layer]." xsd:string {source="Sattler's:layer"} [Term] id: UBERON:0013479 name: lung endothelium namespace: uberon def: "A blood vessel endothelium that is part of a lung [Automatically generated definition]." [OBOL:automatic] synonym: "respiratory endothelium" RELATED [BTO:0004128] xref: BTO:0004128 xref: CALOHA:TS-0573 is_a: UBERON:0004702 ! respiratory system blood vessel endothelium [Term] id: UBERON:0013648 name: masseteric artery namespace: uberon def: "The masseteric artery is small and passes laterally through the mandibular notch to the deep surface of the masseter muscle, which it supplies. It anastomoses with the masseteric branches of the external maxillary artery and with the transverse facial artery." [http://en.wikipedia.org/wiki/Masseteric_artery] synonym: "arteria masseterica" EXACT LATIN [http://en.wikipedia.org/wiki/Masseteric_artery] xref: FMA:49739 xref: http://linkedlifedata.com/resource/umls/id/C0226149 xref: http://www.snomedbrowser.com/Codes/Details/147864007 xref: Masseteric:artery xref: NCIT:C53052 xref: UMLS:C0226149 {source="ncithesaurus:Masseteric_Artery"} is_a: UBERON:0001637 ! artery relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery [Term] id: UBERON:0013755 name: arterial blood namespace: uberon def: "A blood that is part of a artery." [OBOL:automatic] subset: pheno_slim synonym: "arterial blood" EXACT [FMA:83066] synonym: "blood in artery" EXACT [FMA:83066] synonym: "portion of arterial blood" EXACT [FMA:83066] xref: FMA:83066 relationship: part_of UBERON:0001637 ! artery [Term] id: UBERON:0013756 name: venous blood namespace: uberon def: "A blood that is part of a vein." [OBOL:automatic] synonym: "blood in vein" EXACT [FMA:83067] synonym: "portion of venous blood" EXACT [FMA:83067] synonym: "venous blood" EXACT [FMA:83067] xref: FMA:83067 relationship: part_of UBERON:0001638 ! vein [Term] id: UBERON:0013757 name: capillary blood namespace: uberon def: "A blood that is part of a capillary." [OBOL:automatic] synonym: "blood in capillary" EXACT [] synonym: "portion of blood in capillary" EXACT [FMA:263901] synonym: "portion of capillary blood" EXACT [] xref: FMA:263901 xref: NCIT:C32212 relationship: part_of UBERON:0001982 ! capillary [Term] id: UBERON:0013768 name: great vessel of heart namespace: uberon def: "Great vessels is a term used to refer collectively to the large vessels that bring blood to and from the heart." [http://en.wikipedia.org/wiki/Great_vessels] comment: Groupings may vary - typically pulmonary vessels and aorta and vena cavae subset: grouping_class synonym: "great vessel" BROAD [] synonym: "great vessel of thorax" EXACT [] xref: EMAPA:36460 xref: Great:vessels xref: http://www.snomedbrowser.com/Codes/Details/304066000 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0014399 name: sinusoidal space namespace: uberon def: "A anatomical space that is enclosed by a sinusoid." [OBOL:automatic] synonym: "lumen of sinusoid" EXACT [FMA:63133] synonym: "sinusoid lumen" EXACT [FMA:63133] xref: FMA:63133 is_a: UBERON:0010161 ! lumen of blood vessel relationship: luminal_space_of UBERON:0003909 ! sinusoid relationship: part_of UBERON:0003909 ! sinusoid [Term] id: UBERON:0014400 name: hepatic sinusoidal space namespace: uberon def: "A sinusoidal space that is part of a hepatic sinusoid." [OBOL:automatic] synonym: "lumen of hepatic sinusoid" EXACT [FMA:262090] xref: FMA:262090 is_a: UBERON:0014399 ! sinusoidal space intersection_of: UBERON:0014399 ! sinusoidal space intersection_of: part_of UBERON:0001281 ! hepatic sinusoid relationship: part_of UBERON:0001281 ! hepatic sinusoid [Term] id: UBERON:0014401 name: renal venous blood vessel namespace: uberon def: "Any member of the network of tubes that return blood from the renal tissues to the systemic circulation." [MGI:csmith] subset: pheno_slim synonym: "kidney venous blood vessel" EXACT [MA:0002591] synonym: "kidney venous system" RELATED [EMAPA:31450] synonym: "venous blood vessel of kidney" EXACT [] xref: EMAPA:31450 xref: MA:0002591 is_a: UBERON:0003517 ! kidney blood vessel is_a: UBERON:0003920 ! venous blood vessel property_value: UBPROP:0000012 "we follow MA and MP in distinguishing the venous blood vessel from the vein. The kidney cortex vein is not considered a renal vein, nor is the vasa recta" xsd:string {external_ontology="MA"} [Term] id: UBERON:0014685 name: pterygoid plexus namespace: uberon def: "The pterygoid plexus is a venous plexus of considerable size, and is situated between the temporalis muscle and lateral pterygoid muscle, and partly between the two pterygoid muscles." [http://en.wikipedia.org/wiki/Pterygoid_plexus] synonym: "middle meningeal vein" RELATED [http://en.wikipedia.org/wiki/Pterygoid_plexus] synonym: "plexus pterygoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Pterygoid_plexus] synonym: "plexus venosus pterygoideus" EXACT LATIN [FMA:TA] synonym: "pterygoid plexus vein" RELATED [http://en.wikipedia.org/wiki/Pterygoid_plexus] synonym: "pterygoid venous plexus" EXACT [http://en.wikipedia.org/wiki/Pterygoid_plexus] synonym: "pterygoid venous plexus" EXACT [FMA:50944] xref: FMA:50944 xref: Pterygoid:plexus is_a: UBERON:0001593 {source="FMA"} ! venous plexus is_a: UBERON:0011362 ! cranial blood vasculature [Term] id: UBERON:0014686 name: angular vein namespace: uberon def: "The angular vein formed by the junction of the frontal vein and supraorbital vein, runs obliquely downward, on the side of the root of the nose, to the level of the lower margin of the orbit, where it becomes the anterior facial vein. It receives the external nasal veins of the ala nasi, and communicates with the superior ophthalmic vein through the nasofrontal vein, thus establishing an important anastomosis between the anterior facial vein and the cavernous sinus." [http://en.wikipedia.org/wiki/Angular_vein] xref: Angular:vein xref: FMA:50893 xref: http://www.snomedbrowser.com/Codes/Details/151804007 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001653 ! facial vein relationship: tributary_of UBERON:0001653 ! facial vein [Term] id: UBERON:0014690 name: left gastric vein namespace: uberon def: "The Left gastric vein (or coronary vein) carries blood low in Oxygen, tributaries derived from both surfaces of the stomach; it runs from right to left along the lesser curvature of the stomach, between the two layers of the lesser omentum, to the esophageal opening of the stomach, where it receives some esophageal veins. It then turns backward and passes from left to right behind the omental bursa and drains into the portal vein. Esophageal and paraesophageal varices are primarily supplied by the left gastric vein and typically drain into the azygos/hemiazygos venous system." [http://en.wikipedia.org/wiki/Left_gastric_vein] synonym: "coronary vein" RELATED [http://en.wikipedia.org/wiki/Left_gastric_vein] synonym: "vena gastrica sinistra" EXACT LATIN [http://en.wikipedia.org/wiki/Left_gastric_vein] xref: FMA:15399 xref: http://en.wikipedia.org/wiki/Left_gastric_vein xref: http://www.snomedbrowser.com/Codes/Details/281061005 is_a: UBERON:0004450 ! gastric vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0014691 name: right gastric vein namespace: uberon def: "The right gastric vein, also known as the pyloric vein, drains blood from the lesser curvature of the stomach into the hepatic portal vein. It is part of the portal circulation." [http://en.wikipedia.org/wiki/Right_gastric_vein] synonym: "pyloric vein" RELATED [http://en.wikipedia.org/wiki/Right_gastric_vein] synonym: "vena gastrica dextra" EXACT LATIN [http://en.wikipedia.org/wiki/Right_gastric_vein] xref: FMA:15400 xref: http://en.wikipedia.org/wiki/Right_gastric_vein xref: http://www.snomedbrowser.com/Codes/Details/281062003 is_a: UBERON:0004450 ! gastric vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0014692 name: superficial epigastric vein namespace: uberon def: "The superficial epigastric vein is a vein which travels with the superficial epigastric artery. It joins the accessory saphenous vein near the fossa ovalis." [http://en.wikipedia.org/wiki/Superficial_epigastric_vein] xref: FMA:44318 xref: http://en.wikipedia.org/wiki/Superficial_epigastric_vein xref: http://www.snomedbrowser.com/Codes/Details/286971006 is_a: UBERON:0004261 ! lower leg blood vessel is_a: UBERON:0006356 ! epigastric vein is_a: UBERON:0035550 ! superficial vein relationship: part_of UBERON:0001363 ! great saphenous vein relationship: tributary_of UBERON:0001363 ! great saphenous vein [Term] id: UBERON:0014693 name: inferior alveolar artery namespace: uberon xref: FMA:49695 xref: http://www.snomedbrowser.com/Codes/Details/276151008 is_a: UBERON:0009654 ! alveolar artery [Term] id: UBERON:0014694 name: posterior auricular artery namespace: uberon def: "The posterior auricular artery is a small artery and arises from the external carotid artery, above the Digastric muscle and Stylohyoid muscle, opposite the apex of the styloid process. It ascends posteriorly beneath the parotid gland, along the styloid process of the temporal bone, between the cartilage of the ear and the mastoid process of the temporal bone along the lateral side of the head. The posterior auricular artery supplies blood to the scalp posterior to the auricle and to the auricle itself." [http://en.wikipedia.org/wiki/Posterior_auricular_artery] xref: FMA:49624 xref: http://en.wikipedia.org/wiki/Posterior_auricular_artery xref: http://www.snomedbrowser.com/Codes/Details/244220004 is_a: UBERON:0009655 ! auricular artery is_a: UBERON:0035398 ! branch of external carotid artery [Term] id: UBERON:0014695 name: deep auricular artery namespace: uberon def: "The deep auricular artery often arises in common with the anterior tympanic artery. It ascends in the substance of the parotid gland, behind the temporomandibular articulation, pierces the cartilaginous or bony wall of the external acoustic meatus, and supplies its cuticular lining and the outer surface of the tympanic membrane. It gives a branch to the temporomandibular joint." [http://en.wikipedia.org/wiki/Deep_auricular_artery] xref: FMA:49689 xref: http://en.wikipedia.org/wiki/Deep_auricular_artery xref: http://www.snomedbrowser.com/Codes/Details/147157007 is_a: UBERON:0009655 ! auricular artery intersection_of: UBERON:0009655 ! auricular artery intersection_of: part_of UBERON:0035551 ! deep vasculature relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0035551 ! deep vasculature [Term] id: UBERON:0014696 name: anterior choroidal artery namespace: uberon def: "The anterior choroidal artery originates from the internal carotid artery, though it also rarely arises from the middle cerebral artery." [http://en.wikipedia.org/wiki/Anterior_choroidal_artery] synonym: "anterior choroidal" RELATED [http://en.wikipedia.org/wiki/Anterior_choroidal_artery] xref: FMA:50087 xref: http://en.wikipedia.org/wiki/Anterior_choroidal_artery xref: http://www.snomedbrowser.com/Codes/Details/244211008 xref: NCIT:C32083 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0013151 ! choroidal artery disjoint_from: UBERON:0014697 {source="lexical"} ! posterior choroidal artery relationship: branching_part_of UBERON:0001532 {source="FMA"} ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery [Term] id: UBERON:0014697 name: posterior choroidal artery namespace: uberon xref: FMA:50657 xref: http://www.snomedbrowser.com/Codes/Details/369342007 xref: NCIT:C33352 is_a: UBERON:0013151 ! choroidal artery is_a: UBERON:0035508 ! branch of posterior cerebral artery [Term] id: UBERON:0014699 name: extraembryonic venous system namespace: uberon def: "A venous system that overlaps a umbilical cord and is part of a entire extraembryonic component." [OBOL:automatic] xref: EHDAA2:0000479 xref: EMAPA:16374 xref: VHOG:0000282 is_a: UBERON:0004582 ! venous system is_a: UBERON:0014701 {source="VHOG"} ! extraembryonic vascular system [Term] id: UBERON:0014701 name: extraembryonic vascular system namespace: uberon def: "A vascular system that overlaps a umbilical cord and is part of a entire extraembryonic component." [OBOL:automatic] xref: EHDAA2:0000478 xref: EMAPA:16370 xref: VHOG:0001396 is_a: UBERON:0007798 ! vascular system [Term] id: UBERON:0014768 name: superior palpebral vein namespace: uberon def: "A blood vessel that drains from from an upper eyelid." [http://orcid.org/0000-0002-6601-2165] synonym: "venae palpebrales superiores" RELATED LATIN [] xref: FMA:50907 is_a: UBERON:0014769 ! palpebral vein [Term] id: UBERON:0014769 name: palpebral vein namespace: uberon def: "A blood vessel that drains from from an eyelid." [http://orcid.org/0000-0002-6601-2165] synonym: "palpebral veins" RELATED PLURAL [] synonym: "venae palpebrales" RELATED LATIN [] xref: FMA:51997 xref: http://www.snomedbrowser.com/Codes/Details/152208004 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0014686 ! angular vein relationship: tributary_of UBERON:0014686 ! angular vein [Term] id: UBERON:0014770 name: palpebral artery namespace: uberon def: "An artery that supplies blood to an eyelid." [http://orcid.org/0000-0002-6601-2165] xref: http://www.snomedbrowser.com/Codes/Details/148571007 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel property_value: UBPROP:0000008 "In humans, the eyelids are supplied with blood by two arches on each upper and lower lid. The arches are formed by anastamoses of the lateral palpebral arteries and medial palpebral arteries, branching off from the lacrimal artery and ophthalmic artery, respectively. In amphibians, the eyelids may be supplied by branches of the lateral pretrosal arteries.[cjm]" xsd:string [Term] id: UBERON:0014772 name: lateral palpebral artery namespace: uberon def: "The lateral palpebral arteries are small arteries which supply the eyelid." [http://en.wikipedia.org/wiki/Lateral_palpebral_arteries] synonym: "lateral palpebral branch of ophthalmic artery" EXACT [FMA:49940] synonym: "lateral palpebral branches" RELATED [http://en.wikipedia.org/wiki/Lateral_palpebral_arteries] xref: FMA:49940 xref: http://en.wikipedia.org/wiki/Lateral_palpebral_arteries xref: http://www.snomedbrowser.com/Codes/Details/369323008 is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0014770 ! palpebral artery disjoint_from: UBERON:0014773 {source="lexical"} ! medial palpebral artery relationship: branching_part_of UBERON:0001622 {source="FMA"} ! lacrimal artery relationship: part_of UBERON:0001622 ! lacrimal artery [Term] id: UBERON:0014773 name: medial palpebral artery namespace: uberon def: "The medial palpebral arteries (internal palpebral arteries) are arteries of the head. They are two in number, superior and inferior, arise from the ophthalmic, opposite the pulley of the Obliquus superior." [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] synonym: "inferior palpebral artery" RELATED [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] synonym: "internal palpebral arteries" RELATED [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] synonym: "internal palpebral artery" RELATED [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] synonym: "medial palpebral branch of ophthalmic artery" EXACT [FMA:50012] synonym: "superior palpebral" RELATED [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] synonym: "superior palpebral artery" RELATED [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] xref: FMA:50012 xref: http://en.wikipedia.org/wiki/Medial_palpebral_arteries xref: http://www.snomedbrowser.com/Codes/Details/369331003 is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0014770 ! palpebral artery relationship: branching_part_of UBERON:0001619 {source="FMA"} ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery [Term] id: UBERON:0014786 name: extraembryonic umbilical vein namespace: uberon def: "Extraembryonic part of the vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta." [VHOG:0000015] synonym: "extraembryonic umbilical vein" EXACT [VHOG:0000015] xref: VHOG:0000015 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0002066 ! umbilical vein relationship: part_of UBERON:0007807 {source="EHDAA2"} ! connecting stalk vasculature relationship: part_of UBERON:0014699 {source="EHDAA2"} ! extraembryonic venous system [Term] id: UBERON:0014787 name: left extraembryonic umbilical vein namespace: uberon def: "A extraembryonic umbilical vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] synonym: "extraembryonic umbilical vein left" EXACT [EHDAA2:0000938] xref: EHDAA2:0000938 is_a: UBERON:0014786 ! extraembryonic umbilical vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0014788 name: right extraembryonic umbilical vein namespace: uberon def: "A extraembryonic umbilical vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] synonym: "extraembryonic umbilical vein right" EXACT [EHDAA2:0001722] xref: EHDAA2:0001722 is_a: UBERON:0014786 ! extraembryonic umbilical vein property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0014789 name: embryo portion of umbilical vein namespace: uberon synonym: "embryonic umbilical vein" EXACT [VHOG:0000400] xref: VHOG:0000400 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0002066 ! umbilical vein property_value: UBPROP:0000001 "Vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta[VHOG:0000400]." xsd:string {source="VHOG:0000400"} [Term] id: UBERON:0014851 name: chorda tendinea of left ventricle namespace: uberon def: "Chorda tendinea which is attached to the leaflet of mitral valve and is continuous with the endocardium of papillary muscle of left ventricle." [FMA:9349] subset: pheno_slim xref: FMA:9349 is_a: UBERON:0005994 ! chorda tendineae intersection_of: UBERON:0005994 ! chorda tendineae intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0014852 name: chorda tendinea of right ventricle namespace: uberon def: "Chorda tendinea which is attached to the leaflet of tricuspid valve and is continuous with the endocardium of papillary muscle of right ventricle." [FMA:9300] subset: pheno_slim xref: FMA:9300 is_a: UBERON:0005994 ! chorda tendineae intersection_of: UBERON:0005994 ! chorda tendineae intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0014853 name: commissural leaflet of mitral valve namespace: uberon def: "Leaflet of mitral valve which is attached to the commissural chorda tendinea of left ventricle." [FMA:223086] synonym: "commissural cusp of mitral valve" EXACT [FMA:223086] xref: FMA:223086 is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet [Term] id: UBERON:0014854 name: anterior leaflet of mitral valve namespace: uberon def: "Leaflet of mitral valve which is attached to the anterior head of the posterior papillary muscle of left ventricle through the chorda tendinea of the left ventricle." [FMA:7242] synonym: "anterior cusp of mitral valve" EXACT [FMA:7242] synonym: "anterior leaflet" BROAD [BGEE:ANiknejad] synonym: "anterior mitral leaflet" EXACT [FMA:7242] synonym: "anteromedial leaflet" BROAD [BGEE:ANiknejad] synonym: "anteromedial leaflet of mitral valve" EXACT [FMA:7242] synonym: "aortic leaflet of mitral valve" EXACT [FMA:7242] synonym: "aortic leaflet of the left-sided mitral valve" EXACT [BGEE:ANiknejad] synonym: "cuspis anterior valvae atrioventricularis sinistri" EXACT LATIN [FMA:7242, FMA:TA] synonym: "greater leaflet of mitral valve" EXACT [FMA:7242] synonym: "septal leaflet of mitral valve" EXACT [FMA:7242] xref: FMA:7242 xref: http://www.snomedbrowser.com/Codes/Details/244354001 is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet disjoint_from: UBERON:0014855 {source="lexical"} ! posterior leaflet of mitral valve [Term] id: UBERON:0014855 name: posterior leaflet of mitral valve namespace: uberon def: "Leaflet of mitral valve which is attached to the posterior head of the lateral papillary muscle of left ventricle through the chorda tendinea of the left ventricle." [FMA:7243] synonym: "cuspis posterior (valva mitralis)" EXACT LATIN [FMA:7243, FMA:TA] synonym: "cuspis posterior valvae atrioventricularis sinistri" EXACT LATIN [FMA:7243, FMA:TA] synonym: "mural leaflet of mitral valve" EXACT [FMA:7243] synonym: "posterior cusp of mitral valve" EXACT [FMA:7243] synonym: "posterior mitral leaflet" EXACT [FMA:7243] synonym: "posterolateral leaflet of mitral valve" EXACT [FMA:7243] synonym: "smaller leaflet of mitral valve" EXACT [FMA:7243] synonym: "ventricular leaflet of mitral valve" EXACT [FMA:7243] xref: FMA:7243 xref: http://www.snomedbrowser.com/Codes/Details/244355000 is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet [Term] id: UBERON:0014903 name: primordial vasculature namespace: uberon def: "A portion of tissue that will develop into vasculature." [ZFA:0005076, ZFA:curator] xref: EFO:0003708 xref: TAO:0005076 xref: ZFA:0005076 relationship: has_potential_to_develop_into UBERON:0002049 ! vasculature relationship: part_of UBERON:0011695 ! embryonic cardiovascular system [Term] id: UBERON:0014904 name: intersegmental pulmonary vein namespace: uberon def: "A vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein." [http://www.medilexicon.com/medicaldictionary.php?t=97310] synonym: "infrasegmental part" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part] synonym: "infrasegmental part of pulmonary vein" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part] synonym: "intersegmental part of pulmonary vein" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein] synonym: "intersegmental vein" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein] synonym: "partes intersegmentales venarum pulmonum" EXACT LATIN [http://www.medilexicon.com/medicaldictionary.php?s=partes+intersegmentales+venarum+pulmonum] xref: FMA:76965 is_a: UBERON:0002016 {source="FMA"} ! pulmonary vein [Term] id: UBERON:0014907 name: intersomitic vessel namespace: uberon def: "One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites." [MGI:anna] subset: pheno_slim synonym: "intersegmental vessel" EXACT [ZFA:0001285] synonym: "intersegmental vessels" EXACT PLURAL [ZFA:0001285] synonym: "intersomitic blood vessel" EXACT [XAO:0004075] synonym: "intersomitic vessels" EXACT PLURAL [ZFA:0001285] synonym: "segmental vessel" EXACT [ZFA:0001285] xref: EFO:0003664 xref: EMAPA:37389 {source="MA:th"} xref: TAO:0001285 xref: XAO:0004075 xref: ZFA:0001285 is_a: UBERON:0001981 {source="ZFA"} ! blood vessel relationship: develops_from UBERON:0005805 {source="ZFA"} ! dorsal aorta property_value: UBPROP:0000001 "Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these don't have venous or arterial markers[ZFA:0001285, ZFIN:ZDB-PUB-030908-4]." xsd:string {source="ZFA:0001285, ZFIN:ZDB-PUB-030908-4"} [Term] id: UBERON:0015125 name: anterior internodal tract namespace: uberon def: "Internodal tract which consists of the atrial and atrial septal branches." [FMA:9480] synonym: "anterior internodal fasciculus" EXACT [FMA:9480] synonym: "anterior internodal tract muscle tissue" EXACT [FMA:9480] xref: FMA:9480 is_a: UBERON:0009966 {source="FMA"} ! internodal tract disjoint_from: UBERON:0015127 {source="lexical"} ! posterior internodal tract [Term] id: UBERON:0015126 name: middle internodal tract namespace: uberon synonym: "internodal tract of Wenckebach" EXACT [FMA:9482] synonym: "middle internodal fasciculus" EXACT [FMA:9482] synonym: "middle internodal tract muscle tissue" EXACT [FMA:9482] xref: FMA:9482 is_a: UBERON:0009966 {source="FMA"} ! internodal tract [Term] id: UBERON:0015127 name: posterior internodal tract namespace: uberon synonym: "internodal tract of Thorel" EXACT [FMA:9483] synonym: "posterior internodal fasciculus" EXACT [FMA:9483] synonym: "posterior internodal tract muscle tissue" EXACT [FMA:9483] xref: FMA:9483 is_a: UBERON:0009966 {source="FMA"} ! internodal tract [Term] id: UBERON:0015128 name: subepicardial layer of epicardium namespace: uberon synonym: "perimysial connective tissue of subepicardium" EXACT [FMA:83105] synonym: "subepicardial connective tissue" EXACT [FMA:83105] xref: FMA:83105 is_a: UBERON:0007188 ! mesothelium of serous pericardium relationship: part_of UBERON:0002348 {source="FMA"} ! epicardium property_value: IAO:0000116 "consider merging into myocardial compact layer" xsd:string [Term] id: UBERON:0015129 name: epicardial fat namespace: uberon def: "Visceral intrapericardial fat contiguous with the myocardial surface." [https://doi.org/10.5935/abc.20130138] synonym: "epicardial adipose tissue" EXACT [] synonym: "pericardial adipose tissue" EXACT [] xref: FMA:9871 xref: http://www.snomedbrowser.com/Codes/Details/42267001 relationship: adjacent_to UBERON:0002348 ! epicardium relationship: adjacent_to UBERON:0002425 ! visceral serous pericardium relationship: composed_primarily_of CL:1000309 ! epicardial adipocyte relationship: part_of UBERON:0015128 ! subepicardial layer of epicardium [Term] id: UBERON:0015156 name: terminal branch of ophthalmic artery namespace: uberon def: "The two terminal branches of the ophthalmic artery in humans are the dorsal nasal artery and the supratrochlear artery" [http://en.wikipedia.org/wiki/Dorsal_nasal_artery, http://en.wikipedia.org/wiki/Supratrochlear_artery] xref: FMA:51956 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001619 ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery [Term] id: UBERON:0015157 name: zygomatico-orbital artery namespace: uberon def: "The middle temporal artery occasionally gives off a zygomatico-orbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit. This branch, which may arise directly from the superficial temporal artery, supplies the Orbicularis oculi, and anastomoses with the lacrimal and palpebral branches of the ophthalmic artery." [http://en.wikipedia.org/wiki/Zygomatico-orbital_artery] synonym: "zygomaticooerbital branch" RELATED [http://en.wikipedia.org/wiki/Zygomatico-orbital_artery] synonym: "zygomaticoorbital branch" RELATED [http://en.wikipedia.org/wiki/Zygomatico-orbital_artery] xref: FMA:49663 xref: http://www.snomedbrowser.com/Codes/Details/146753008 xref: Zygomatico-orbital:artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001614 {source="FMA"} ! superficial temporal artery relationship: part_of UBERON:0001614 ! superficial temporal artery [Term] id: UBERON:0015158 name: ophthalmotemporal branch of external ophthalmic artery namespace: uberon comment: The blood supply to the (Harderian) gland has been reported in greatest detail in the sparrow Passer domesticus (Slonaker, 1918), where it is derived through the ophthalmotemporal branch of the external ophthalmic artery http://www.ncbi.nlm.nih.gov/pubmed/7559104 synonym: "ophthalmotemporal artery" RELATED [] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branching_part_of UBERON:0001619 ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery [Term] id: UBERON:0015160 name: supraorbital artery namesp